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List of works by Colomban de Vargas

454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes

scientific article

A global ocean atlas of eukaryotic genes.

scientific article published on 25 January 2018

A holistic approach to marine eco-systems biology

scientific article

A role for diatom-like silicon transporters in calcifying coccolithophores

scientific article

A time line of the environmental genetics of the haptophytes

scientific article

Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells.

scientific article published on 27 January 2017

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region.

scientific article published on 23 May 2018

An original mode of symbiosis in open ocean plankton

scientific article (publication date: 30 October 2012)

Basin-Scale Underway Quantitative Survey of Surface Microplankton Using Affordable Collection and Imaging Tools Deployed From Tara

scientific article published in 2022

Benthic protists: the under-charted majority

scientific article

Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions

scientific article published on 07 September 2020

Bioprospecting marine plankton

scientific article (publication date: 14 November 2013)

CACO3 OPTICAL DETECTION WITH FLUORESCENT IN SITU HYBRIDIZATION: A NEW METHOD TO IDENTIFY AND QUANTIFY CALCIFYING MICROORGANISMS FROM THE OCEANS

scientific article

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

scientific article

Coiling dimorphism within a genetic type of the planktonic foraminifer Globorotalia truncatulinoides

Comparative transcriptome of wild type and selected strains of the microalgae Tisochrysis lutea provides insights into the genetic basis, lipid metabolism and the life cycle

scientific article (publication date: 2014)

Coupling between taxonomic and functional diversity in protistan coastal communities

scientific article published on 15 February 2019

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

scientific article

Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria

scientific article

Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

scientific article published on 16 October 2015

Diatom diversity through HTS-metabarcoding in coastal European seas

scientific article published in Scientific Reports

Different processes shape prokaryotic and picoeukaryotic assemblages in the sunlit ocean microbiome

Disentangling the mechanisms shaping the surface ocean microbiota

scientific article published on 20 April 2020

Diverse molecular signatures for ribosomally 'active' Perkinsea in marine sediments

scientific article (publication date: 29 April 2014)

Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing

scientific article published on 30 December 2014

Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms

scientific article

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

scientific article

Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.

scientific article published on 19 November 2012

Diversity, ecology and biogeochemistry of cyst-forming acantharia (radiolaria) in the oceans

scientific article published in 2013

Ecological modeling of the temperature dependence of cryptic species of planktonic Foraminifera in the Southern Hemisphere

scientific article published in 2013

Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes

scientific article published on 27 May 2016

Erratum to: On the description of Tisochrysis lutea gen. nov. sp. nov. and Isochrysis nuda sp. nov. in the Isochrysidales, and the transfer of Dicrateria to the Prymnesiales (Haptophyta) ⬇️

erratum

EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution

scientific article published on 17 September 2018

Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean

scientific article published on 29 December 2020

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

scientific article

Extreme Diversity of Diplonemid Eukaryotes in the Ocean

scientific article

Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans

scientific article (publication date: 4 August 2009)

First observations of heterococcolithophore–holococcolithophore life cycle combinations in the family Pontosphaeraceae (Calcihaptophycideae, Haptophyta)

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

scientific article published in 2022

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

scientific article published on 01 November 2019

Genetic and morphological divergence in the warm-water planktonic foraminifera genus Globigerinoides

scientific article published on 05 December 2019

Genetic delineation between and within the widespread coccolithophore morpho-species Emiliania huxleyi and Gephyrocapsa oceanica (Haptophyta).

scientific article published on 13 January 2014

Genomics and evolution. Shotgun sequencing in the sea: a blast from the past?

scientific article published on 4 March 2004

Global Trends in Marine Plankton Diversity across Kingdoms of Life

scientific article published on 01 November 2019

Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis

scientific article published on 25 September 2015

Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

scientific article published on 06 July 2021

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding

scientific article published on 3 September 2015

Hidden diversity of Acoelomorpha revealed through metabarcoding

scientific article published on September 2016

High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans

scientific article published on 23 April 2021

Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus

scientific article published on 18 May 2009

Host-virus shift of the sphingolipid pathway along an Emiliania huxleyi bloom: survival of the fattest.

scientific article published on 23 July 2009

In situ survey of life cycle phases of the coccolithophore Emiliania huxleyi (Haptophyta)

scientific article published on 17 April 2012

Insights into global diatom distribution and diversity in the world's ocean

scientific article

Insights into the harmful algal flora in northwestern Mediterranean coastal lagoons revealed by pyrosequencing metabarcodes of the 28S rRNA gene

scientific article published on 24 July 2017

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

scientific article

Light-dependent transcriptional regulation of genes of biogeochemical interest in the diploid and haploid life cycle stages of Emiliania huxleyi

scientific article published on 20 March 2009

Longitudinal differentiation among pelagic populations in a planktic foraminifer

scientific article (publication date: July 2012)

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

scientific article published on 28 June 2015

Membrane lipids of symbiotic algae are diagnostic of sensitivity to thermal bleaching in corals

scientific article (publication date: 14 September 2004)

Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity

scholarly article (2018)

Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity.

scientific article

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

scientific article published on 18 September 2013

Methodology for Single-Cell Genetic Analysis of Planktonic Foraminifera for Studies of Protist Diversity and Evolution

Molecular Identification of Sequestered Diatom Chloroplasts and Kleptoplastidy in Foraminifera

scientific article published in 2011

Molecular diversity and distribution of marine fungi across 130 European environmental samples

scientific article published in November 2015

Molecular phylogeny and morphological evolution of the Acantharia (Radiolaria).

scientific article

MorphospeciesversusPhylospecies Concepts for Evaluating Phytoplankton Diversity: The Case of the Coccolithophores

scholarly article by Jeremy R. Young et al published November 2014 in Cryptogamie Algologie

NEW EVIDENCE FOR MORPHOLOGICAL AND GENETIC VARIATION IN THE COSMOPOLITAN COCCOLITHOPHORE EMILIANIA HUXLEYI (PRYMNESIOPHYCEAE) FROM THE COX1b-ATP4 GENES(1).

scientific article

Naked foraminiferans revealed

scientific article published in Nature

Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export

scientific article published on 5 March 2018

Neobodonids are dominant kinetoplastids in the global ocean

scientific article published on 21 December 2017

New insights into the diversity of marine picoeukaryotes

scientific article

Nomenclature for the Nameless: A Proposal for an Integrative Molecular Taxonomy of Cryptic Diversity Exemplified by Planktonic Foraminifera.

scientific article

Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems

scientific article

Ocean plankton. Determinants of community structure in the global plankton interactome

scientific article published on May 2015

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport

scientific article

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

scientific article published on May 2015

Ocean plankton. Patterns and ecological drivers of ocean viral communities

scientific article published on May 2015

Ocean plankton. Structure and function of the global ocean microbiome

scientific article published on May 2015

On the description of Tisochrysis lutea gen. nov. sp. nov. and Isochrysis nuda sp. nov. in the Isochrysidales, and the transfer of Dicrateria to the Prymnesiales (Haptophyta) ⬇️

PFR²: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.

scientific article published on 31 March 2015

Pan genome of the phytoplankton Emiliania underpins its global distribution.

scientific article

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

article

Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

scientific article published on 04 February 2022

Patterns of rare and abundant marine microbial eukaryotes

scientific article

Pelagodinium gen. nov. and P. béii comb. nov., a dinoflagellate symbiont of planktonic foraminifera.

scientific article published on 11 February 2010

Phylogenetic relationships and evolutionary patterns of the order Collodaria (Radiolaria)

scientific article (publication date: 2012)

PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy.

scientific article published on 5 March 2015

Phytoplankton biogeography and community stability in the ocean

scientific article (publication date: 2 April 2010)

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context

scientific article published on 27 January 2014

PlanktoScope: Affordable Modular Quantitative Imaging Platform for Citizen Oceanography

scientific article published in 2022

Plankton networks driving carbon export in the oligotrophic ocean

scientific article

Plankton-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology

Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology

scientific article published in 2017

Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems

scientific article published on 19 November 2020

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes

scientific article published on 31 October 2017

Recommendations for plankton measurements on the GO-SHIP program with relevance to other sea-going expeditions. SCOR Working Group 154 GO-SHIP Report.

SSU rDNA divergence in planktonic foraminifera: molecular taxonomy and biogeographic implications

scientific article

Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems

scientific article published on 15 April 2019

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

scientific article published on 22 January 2018

Soil Protists in Three Neotropical Rainforests are Hyperdiverse and Dominated by Parasites

scholarly article published 29 April 2016

Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages

scientific article published on 7 February 2018

Survey of the green picoalga Bathycoccus genomes in the global ocean

scientific article

Swarm v2: highly-scalable and high-resolution amplicon clustering

scientific article

Swarm: robust and fast clustering method for amplicon-based studies

scientific article published on 25 September 2014

Tara Oceans: towards global ocean ecosystems biology

scientific article published on 12 May 2020

The "Cheshire Cat" escape strategy of the coccolithophore Emiliania huxleyi in response to viral infection

scholarly article

The Evolution of Silicon Transport in Eukaryotes

scientific article

The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms

scientific article published in 2021

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

scientific article

The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates

scientific article

The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean

scientific article published on 23 September 2019

The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer

The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean

scientific article

The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.).

scientific article

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

scientific article (publication date: 2009)

Ubiquitous abundance distribution of non-dominant plankton across the global ocean

scientific article published on 18 June 2018

Ubiquitous abundance distribution of non-dominant plankton across the world's ocean

UniEuk: Time to Speak a Common Language in Protistology!

scientific article

Unveiling the transcriptional features associated with coccolithovirus infection of natural Emiliania huxleyi blooms

article

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

scientific article

Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean

scientific article published on 08 November 2018

Worldwide genotyping in the planktonic foraminifer Globoconella inflata: implications for life history and paleoceanography

scientific article (publication date: 2011)

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