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List of works by Matthias Platzer

3D Network exploration and visualisation for lifespan data

scholarly article by Rolf Hühne published in October 2018

8p23 beta-defensin copy number determination by single-locus pseudogene-based paralog ratio tests risk bias due to low-frequency sequence variations

scientific article published on 24 January 2014

A chromosome conformation capture ordered sequence of the barley genome

scientific article

A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome

scientific article

A physical, genetic and functional sequence assembly of the barley genome ⬇️

scientific article published on October 17, 2012

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms

scientific article published on 15 November 2013

A short isoform of NOD2/CARD15, NOD2-S, is an endogenous inhibitor of NOD2/receptor-interacting protein kinase 2-induced signaling pathways

scholarly article

A splice site mutation in the methyltransferase gene FTSJ1 in Xp11.23 is associated with non-syndromic mental retardation in a large Belgian family (MRX9)

scientific article

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley

scientific article published on 12 May 2009

Accurate prediction of NAGNAG alternative splicing

scientific article published on 09 April 2009

Age-dependent regulation of tumor-related microRNAs in the brain of the annual fish Nothobranchius furzeri

scientific article

Allele-specific, age-dependent and BMI-associated DNA methylation of human MCHR1

scientific article

Alternative 5' untranslated regions are involved in expression regulation of human heme oxygenase-1

scientific article

Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes

scientific article

Alternative splicing at NAGNAG acceptors: simply noise or noise and more?

scientific article published in November 2006

Alternative splicing of SMPD1 in human sepsis

scientific article published on 21 April 2015

An intronic single base exchange leads to a brown adipose tissue-specific loss of Ucp3 expression and an altered body mass trajectory

scientific article

Analysis of Alpha-2 Macroglobulin from the Long-Lived and Cancer-Resistant Naked Mole-Rat and Human Plasma

scientific article published on 23 June 2015

Analysis of cultivable microbiota and diet intake pattern of the long-lived naked mole-rat

scientific article published on 28 May 2016

Analysis of relative gene dosage and expression differences of the paralogs RABL2A and RABL2B by Pyrosequencing

scientific article published on 04 February 2010

Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei

scholarly article

Association of TLR7 Variants with AIDS-Like Disease and AIDS Vaccine Efficacy in Rhesus Macaques ⬇️

scientific article published on October 13, 2011

Association studies of the copy-number variable ß-defensin cluster on 8p23.1 in adenocarcinoma and chronic pancreatitis

scientific article

BioBayesNet: a web server for feature extraction and Bayesian network modeling of biological sequence data

scientific article

Both copy number and sequence variations affect expression of human DEFB4.

scientific article published on 6 May 2010

Branched-chain amino acid catabolism is a conserved regulator of physiological ageing

scientific article

Characterization of a novel picornavirus isolate from a diseased European eel (Anguilla anguilla).

scientific article published on 24 July 2013

Chicken ovalbumin upstream promoter transcription factor II regulates uncoupling protein 3 gene transcription in Phodopus sungorus

scientific article

Circulation of classical swine influenza virus in Europe between the wars?

scientific article published on 15 December 2013

Comparative analysis of mitochondrial genomes from closely related Rhynchosporium species reveals extensive intron invasion

scientific article

Comparative analysis of the Borrelia garinii genome

scientific article published in 2004

Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi

scientific article

Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity

scientific article published on 16 August 2006

Comparative genome sequence analysis of the Bpa/Str region in mouse and Man

scientific article

Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses

scientific article (publication date: 22 November 2016)

Comparative sequence analysis of the MECP2-locus in human and mouse reveals new transcribed regions

scientific article (publication date: March 2000)

Comparative transcription map of the wobbler critical region on mouse chromosome 11 and the homologous region on human chromosome 2p13-14.

scientific article

Comparison of methods for quantification of subtle splice variants

scientific article published in November 2009

Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing

scientific article

Conserved Senescence Associated Genes and Pathways in Primary Human Fibroblasts Detected by RNA-Seq

scientific article

Conserved genes and pathways in primary human fibroblast strains undergoing replicative and radiation induced senescence

scientific article published on 28 July 2016

Constant splice-isoform ratios in human lymphoblastoid cells support the concept of a splico-stat

scientific article

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L

scientific article

Correction: The anti-tumorigenic activity of A2M-A lesson from the naked mole-rat.

scientific article published on 26 March 2018

Creation and disruption of protein features by alternative splicing -- a novel mechanism to modulate function

scientific article

D-Glucosamine supplementation extends life span of nematodes and of ageing mice

scientific article published on 08 April 2014

DNA sequence and analysis of human chromosome 8

scientific article

DNA sequence and comparative analysis of chimpanzee chromosome 22.

scientific article

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley

scientific article

DictyMOLD-a Dictyostelium discoideum genome browser database

scientific article

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

scientific article published on 12 June 2013

Erratum: Corrigendum: Sarcoidosis is associated with a truncating splice site mutation in the gene BTNL2

article

Evidence for a NOD2-independent susceptibility locus for inflammatory bowel disease on chromosome 16p.

scientific article

Exclusion of mutations in the MTMR1 gene as a frequent cause of X-linked myotubular myopathy

scientific article published in January 2002

Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection

scientific article published on 27 January 2008

Exploring the biomedical potential of uncultivated bacterial symbionts by metagenomic techniques

scientific article published in 2007

Exploring the chemistry of uncultivated bacterial symbionts: antitumor polyketides of the pederin family

scientific article

Extension of life span by impaired glucose metabolism in Caenorhabditis elegans is accompanied by structural rearrangements of the transcriptomic network

scientific article

FRAMA: from RNA-seq data to annotated mRNA assemblies

scientific article

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

scientific article published on 27 May 2011

Functional characterization of two novel 5' untranslated exons reveals a complex regulation of NOD2 protein expression

scientific article

GenColors-based comparative genome databases for small eukaryotic genomes

scientific article published on 28 November 2012

GenColors: Annotation and comparative genomics made easy

article by Juergen Suehnel et al published 21 April 2009 in Nature Precedings

GenColors: annotation and comparative genomics of prokaryotes made easy

scientific article published in January 2007

Gene content and virtual gene order of barley chromosome 1H.

scientific article published on 19 August 2009

Genetic Factors of the Disease Course After Sepsis: Rare Deleterious Variants Are Predictive

scientific article published on 14 September 2016

Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality

scientific article published on 14 September 2016

Genetic and functional identification of the likely causative variant for cholesterol gallstone disease at the ABCG5/8 lithogenic locus

scientific article published on 25 January 2013

Genetic variants of the copy number polymorphic beta-defensin locus are associated with sporadic prostate cancer

scientific article

Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting

scientific article

Genomic organization of a 225-kb region in Xq28 containing the gene for X-linked myotubular myopathy (MTM1) and a related gene (MTMR1)

scientific article

Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.).

scientific article published on 2 March 2013

Haplotypes composed of minor frequency single nucleotide polymorphisms of the TNF gene protect from progression into sepsis: A study using the new sepsis classification

scientific article published on 20 December 2017

Haplotyping and copy number estimation of the highly polymorphic human beta-defensin locus on 8p23 by 454 amplicon sequencing

scientific article

High Copy Numbers of β-Defensin Cluster on 8p23.1, Confer Genetic Susceptibility, and Modulate the Physical Course of Hidradenitis Suppurativa/Acne Inversa

scientific article published on 6 May 2016

High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research

scientific article published on 11 February 2009

High-resolution mapping of the 8p23.1 beta-defensin cluster reveals strictly concordant copy number variation of all genes.

scientific article published in October 2008

Higher gene expression stability during aging in long-lived giant mole-rats than in short-lived rats

article

Hormetic effect of rotenone in primary human fibroblasts

scientific article

Human galanin (GAL) and galanin 1 receptor (GALR1) variations are not involved in fat intake and early onset obesity

scientific article

Human renin binding protein: complete genomic sequence and association of an intronic T/C polymorphism with the prorenin level in males ⬇️

scientific article published on September 1, 1997

Human versus chimpanzee chromosome-wide sequence comparison and its evolutionary implication

scientific article published in January 2003

Human-mouse comparative sequence analysis of the NEMO gene reveals an alternative promoter within the neighboring G6PD gene

scientific article (publication date: 13 June 2001)

Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens

scientific article

Impaired Planar Germ Cell Division in the Testis, Caused by Dissociation of RHAMM from the Spindle, Results in Hypofertility and Seminoma

scientific article published on 19 August 2016

Impaired insulin/IGF1 signaling extends life span by promoting mitochondrial L-proline catabolism to induce a transient ROS signal

scientific article published on April 2012

Impairing L-Threonine Catabolism Promotes Healthspan through Methylglyoxal-Mediated Proteohormesis

scientific article published on 3 March 2018

Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001

Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish

scientific article

Integration of Cistromic and Transcriptomic Analyses Identifies Nphs2, Mafb, and Magi2 as Wilms' Tumor 1 Target Genes in Podocyte Differentiation and Maintenance

scientific article published on 2 January 2015

Isolation and molecular characterization of a second serotype of the encephalomyocarditis virus ⬇️

scientific article published on July 10, 2012

Lack of association of genetic variants in genes of the endocannabinoid system with anorexia nervosa

scientific article

Linking chemical and microbial diversity in marine sponges: possible role for poribacteria as producers of methyl-branched fatty acids

scientific article published in December 2010

Low sulfide levels and a high degree of cystathionine β-synthase (CBS) activation by S-adenosylmethionine (SAM) in the long-lived naked mole-rat

scientific article published on 14 January 2016

MHC-dependent mate choice is linked to a trace-amine-associated receptor gene in a mammal

scientific article (publication date: 12 December 2016)

Melanocortin-4 receptor gene variant I103 is negatively associated with obesity

scientific article

Method for preparing single-stranded DNA templates for Pyrosequencing using vector ligation and universal biotinylated primers.

scientific article

Mhc class I haplotypes associated with survival time in simian immunodeficiency virus (SIV)-infected rhesus macaques

scientific article published on 20 December 2007

Mitochondrial DNA copy number and function decrease with age in the short-lived fish Nothobranchius furzeri

scientific article published on 27 June 2011

Mitochondrial hormesis links low-dose arsenite exposure to lifespan extension

scientific article published on 06 May 2013

Molecular analysis of cataract families in India: new mutations in the CRYBB2 and GJA3 genes and rare polymorphisms ⬇️

scientific article published on September 10, 2010

Molecular characterization of a common fragile site (FRA7H) on human chromosome 7 by the cloning of a simian virus 40 integration site.

scientific article

Multiple pathogenic and benign genomic rearrangements occur at a 35 kb duplication involving the NEMO and LAGE2 genes ⬇️

scientific article (publication date: 15 October 2001)

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

scientific article

Mutation analysis of the MCHR1 gene in human obesity

scientific article published in June 2005

Mutation detection and physical mapping of the CD11 gene cluster in association with inflammatory bowel disease

article

Mutation in ST6GALNAC5 identified in family with coronary artery disease

scientific article published on 08 January 2014

Mutation screen and association studies in the diacylglycerol O-acyltransferase homolog 2 gene (DGAT2), a positional candidate gene for early onset obesity on chromosome 11q13.

scientific article

NOD2-C2 - a novel NOD2 isoform activating NF-kappaB in a muramyl dipeptide-independent manner

scientific article

Naked mole-rat transcriptome signatures of socially suppressed sexual maturation and links of reproduction to aging

Narrowing down the distal border of the copy number variable beta-defensin gene cluster on human 8p23.

scientific article

Neuronal ROS signaling rather than AMPK/sirtuin-mediated energy sensing links dietary restriction to lifespan extension

scientific article published on 14 February 2013

Nibrin, a novel DNA double-strand break repair protein, is mutated in Nijmegen breakage syndrome

scientific article

Non-EST based prediction of exon skipping and intron retention events using Pfam information

scientific article

Nothobranchius furzeri: A Model for Aging Research and More

scientific article

Novel CIC point mutations and an exon-spanning, homozygous deletion identified in oligodendroglial tumors by a comprehensive genomic approach including transcriptome sequencing

scientific article

Novel truncating mutations in the polyglutamine tract binding protein 1 gene (PQBP1) cause Renpenning syndrome and X-linked mental retardation in another family with microcephaly

scientific article

Origin of the European avian-like swine influenza viruses

scientific article published on 29 July 2014

Outgroups and Positive Selection: The Nothobranchius furzeri Case

scientific article published on 13 July 2016

Phylogenetically widespread alternative splicing at unusual GYNGYN donors

scientific article published on January 2006

Phylogeny, genetic variability and colour polymorphism of an emerging animal model: the short-lived annual Nothobranchius fishes from southern Mozambique

scientific article

Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication

scientific article (publication date: November 2011)

Pipeline for large-scale microdroplet bisulfite PCR-based sequencing allows the tracking of hepitype evolution in tumors

scientific article

Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting

scientific article

Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence

scientific article

Prevalence, spectrum, and functional characterization of melanocortin-4 receptor gene mutations in a representative population-based sample and obese adults from Germany

scientific article published on 21 February 2006

Publisher Correction: Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly.

scientific article published on 31 May 2019

RNA sequencing reveals differential expression of mitochondrial and oxidation reduction genes in the long-lived naked mole-rat when compared to mice

scientific article

RNA-seq of the aging brain in the short-lived fish N. furzeri - conserved pathways and novel genes associated with neurogenesis

scientific article published on 25 July 2014

RUMMAGE – a high-throughput sequence annotation system

scientific article published on 01 November 2000

Randomized placebo-controlled intervention with n-3 LC-PUFA-supplemented yoghurt: effects on circulating eicosanoids and cardiovascular risk factors

scientific article published on 28 December 2012

Reassortants of the pandemic (H1N1) 2009 virus and establishment of a novel porcine H1N2 influenza virus, lineage in Germany.

scientific article

Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide

scientific article

SNPSplicer: systematic analysis of SNP-dependent splicing in genotyped cDNAs

scientific article published on November 2006

Sarcoidosis is associated with a truncating splice site mutation in BTNL2.

scientific article

Selection against tandem splice sites affecting structured protein regions

scientific article

Sequence and analysis of chromosome 2 of Dictyostelium discoideum

scientific article published in Nature

Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1.

scientific article

Sequencing errors or SNPs at splice-acceptor guanines in dbSNP?

article published in 2006

Sequencing of 21 varicella-zoster virus genomes reveals two novel genotypes and evidence of recombination

scientific article (publication date: February 2012)

Sequencing of BAC pools by different next generation sequencing platforms and strategies

scientific article

Should the draft chimpanzee sequence be finished?

scientific article

Single-nucleotide polymorphisms in NAGNAG acceptors are highly predictive for variations of alternative splicing

scientific article

Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging

Statistical inference of allelic imbalance from transcriptome data

scientific article

Systematic association mapping identifies NELL1 as a novel IBD disease gene

scientific article published in 2007

Systematic evaluation of the effect of common SNPs on pre-mRNA splicing

scientific article published in April 2009

TassDB2 - A comprehensive database of subtle alternative splicing events

scientific article

TassDB: a database of alternative tandem splice sites

scientific article

Technology-specific error signatures in the 1000 Genomes Project data

scientific article

Telomeres shorten while Tert expression increases during ageing of the short-lived fish Nothobranchius furzeri

scientific article

The DNA sequence of the human X chromosome

scientific article published on 17 March 2005

The Definition of Open Reading Frame Revisited

scientific article published on 20 January 2018

The age related markers lipofuscin and apoptosis show different genetic architecture by QTL mapping in short-lived Nothobranchius fish

scientific article

The analysis of cell division and cell wall synthesis genes reveals mutationally inactivated ftsQ and mraY in a protoplast-type L-form of Escherichia coli

scientific article

The anti-tumorigenic activity of A2M-A lesson from the naked mole-rat

scientific article published on 27 December 2017

The complete sequence of the human locus for NgCAM-related cell adhesion molecule reveals a novel alternative exon in chick and man and conserved genomic organization for the L1 subfamily

scientific article

The genome of an influenza virus from a pilot whale: relation to influenza viruses of gulls and marine mammals

scientific article published on 3 April 2014

The genome of the foraminiferan Reticulomyxa filosa

scientific article

The genome of the social amoeba Dictyostelium discoideum

scientific article

The genomic organization of a human creatine transporter (CRTR) gene located in Xq28

scientific article

The mitochondrial genome of Arctica islandica; Phylogeny and variation

scientific article

The neural cell adhesion molecule L1: genomic organisation and differential splicing is conserved between man and the pufferfish Fugu

scientific article

The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels ⬇️

scientific article published on March 16, 2013

Tissue-, sex-, and age-specific DNA methylation of rat glucocorticoid receptor gene promoter and insulin-like growth factor 2 imprinting control region

scientific article published on 15 September 2017

Transcriptional profiling reveals protective mechanisms in brains of long-lived mice

scientific article published on 27 December 2016

Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly

scientific article published on 30 January 2018

UHX1 and PCTK1: precise characterisation and localisation within a gene-rich region in Xp11.23 and evaluation as candidate genes for retinal diseases mapped to Xp21.1–p11.2 ⬇️

scientific article published on September 1, 1998

Unlocking the barley genome by chromosomal and comparative genomics

scientific article published on 5 April 2011

Unprecedented diversity of catalytic domains in the first four modules of the putative pederin polyketide synthase

scientific article

Validation of mRNA/EST-based gene predictions in human Xp11.4 revealed differences to the organization of the orthologous mouse locus

scientific article published on 8 December 2005

Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns

scientific article

Virus isolate from carp: genetic characterization reveals a novel picornavirus with two aphthovirus 2A-like sequences

scientific article published on January 2014

Widespread and subtle: alternative splicing at short-distance tandem sites

scientific article published on 03 April 2008

Widespread occurrence and genomic context of unusually small polyketide synthase genes in microbial consortia associated with marine sponges

scientific article (publication date: April 2007)

Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity

scientific article

X chromosomal variation is associated with slow progression to AIDS in HIV-1-infected women

scientific article published on August 2009

tuple_plot: fast pairwise nucleotide sequence comparison with noise suppression

scientific article published on 9 June 2006

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