List of works - Margreet Bakker

A Novel Astrovirus-Like RNA Virus Detected in Human Stool

scientific article published on January 2016

A highly virulent variant of HIV-1 circulating in the Netherlands

scientific article published on 4 February 2022

A novel genus in the order Picornavirales detected in human stool

scientific article published on 8 September 2015

Absence of seroreversion in 80 HAART-treated HIV-1 seropositive patients with at least five-years undetectable plasma HIV-1 viral load

scientific article

Adenovirus types 5 and 35 seroprevalence in AIDS risk groups supports type 35 as a vaccine vector

scientific article published on May 2004

Altered dynamics and differential infection profiles of lymphoid and myeloid cell subsets during acute and chronic HIV-1 infection

scientific article

Association between gp120 envelope V1V2 and V4V5 variable loop profiles in a defined HIV-1 transmission cluster

scientific article

Autologous antibody capture to enrich immunogenic viruses for viral discovery

scientific article

Broad cross-clade T-cell responses to gag in individuals infected with human immunodeficiency virus type 1 non-B clades (A to G): importance of HLA anchor residue conservation

scientific article

CD32+CD4+ T Cells Are Highly Enriched for HIV DNA and Can Support Transcriptional Latency

scientific article published on 01 February 2020

Cell-associated HIV-1 RNA predicts viral rebound and disease progression after discontinuation of temporary early ART

scientific article published on 26 March 2020

Cellular levels of HIV unspliced RNA from patients on combination antiretroviral therapy with undetectable plasma viremia predict the therapy outcome ⬇️

scientific article

Characterization of an HIV-1 group M variant that is distinct from the known subtypes

scientific article published on March 2007

Codon and amino acid usage in retroviral genomes is consistent with virus-specific nucleotide pressure

scientific article

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

scientific article published on 13 July 2017

Dendritic cells potently purge latent HIV-1 beyond TCR-stimulation, activating the PI3K-Akt-mTOR pathway

article

Differences in HIV Type 1 RNA Plasma Load Profile of Closely Related Cocirculating Ethiopian Subtype C Strains: C and C′

article

Easy and Accurate Reconstruction of Whole HIV Genomes from Short-Read Sequence Data

article

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing

scientific article published on 4 August 2016

HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients

article

HIV-1 dual infection is associated with faster CD4+ T-cell decline in a cohort of men with primary HIV infection

scientific article published on 9 December 2011

HIV-1 dual infection is associated with faster CD4+T cell decline in a cohort of men with primary HIV infection.

scientific article published on 3 October 2011

Has the rate of CD4 cell count decline before initiation of antiretroviral therapy changed over the course of the Dutch HIV epidemic among MSM?

scientific article

High Current CD4+ T Cell Count Predicts Suboptimal Adherence to Antiretroviral Therapy

scientific article published on 15 October 2015

High prevalence of hepatitis B virus dual infection with genotypes A and G in HIV-1 infected men in Amsterdam, the Netherlands, during 2000-2011

scientific article

Highly sensitive methods based on seminested real-time reverse transcription-PCR for quantitation of human immunodeficiency virus type 1 unspliced and multiply spliced RNA and proviral DNA.

scientific article published on 7 May 2008

Human immunodeficiency virus type 1 gp120 envelope characteristics associated with disease progression differ in family members infected with genetically similar viruses

scientific article published on 26 September 2012

Identification of a new genotype of Torque Teno Mini virus

scientific article published on 30 October 2013

Identification of alternative amino acid substitutions in drug-resistant variants of the HIV-1 reverse transcriptase

scientific article published on 01 July 2006

Incidence of human immunodeficiency virus type 1 dual infections in Amsterdam, The Netherlands, during 2003-2007.

scientific article published in April 2009

Increased multinucleoside drug resistance and decreased replicative capacity of a human immunodeficiency virus type 1 variant with an 8-amino-Acid insert in the reverse transcriptase

scientific article

Lack of detection of XMRV in seminal plasma from HIV-1 infected men in The Netherlands

scientific article

Major decline of hepatitis C virus incidence rate over two decades in a cohort of drug users

scientific article published on 03 March 2007

Modest deviations from optimal adherence to antiretroviral therapy promote residual HIV-1 replication in the absence of virological rebound in plasma.

scientific article published on 3 October 2011

Modest nonadherence to antiretroviral therapy promotes residual HIV-1 replication in the absence of virological rebound in plasma

scientific article published on 20 August 2012

Multiple transmissions of a stable human leucocyte antigen-B27 cytotoxic T-cell-escape strain of HIV-1 in The Netherlands

scientific article

Novel replication-incompetent vector derived from adenovirus type 11 (Ad11) for vaccination and gene therapy: low seroprevalence and non-cross-reactivity with Ad5.

scientific article published on December 2004

Performance of VIDISCA-454 in feces-suspensions and serum

scientific article

Phenotypic and genotypic comparisons of CCR5- and CXCR4-tropic human immunodeficiency virus type 1 biological clones isolated from subtype C-infected individuals

scientific article published on March 2004

Routine HIV-1 genotyping as a tool to identify dual infections

scientific article published on 01 April 2007

Steady increase in cellular HIV-1 load during the asymptomatic phase of untreated infection despite stable plasma viremia

scientific article published on 01 July 2010

Survey of the temporal changes in HIV-1 replicative fitness in the Amsterdam Cohort

scientific article published on 28 March 2007

The evolution of subtype B HIV-1 tat in the Netherlands during 1985-2012.

scientific article

Translational HIV-1 research: from routine diagnostics to new virology insights in Amsterdam, the Netherlands during 1983-2013

scientific article published on 28 August 2013

Transmission of Risk-Group Specific HIV-1 Strains Among Dutch Drug Users for More Than 20 Years and Their Replacement by Nonspecific Strains After Switching to Low-Harm Drug Practices ⬇️

scientific article published on February 1, 2013

Transmission of two distinct HIV type 1 strains to an individual that were harbored for many years by another

scientific article published on 26 July 2011

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

scientific article

Viral load levels measured at set-point have risen over the last decade of the HIV epidemic in the Netherlands

scientific article

Widespread hepatitis B virus genotype G (HBV-G) infection during the early years of the HIV epidemic in the Netherlands among men who have sex with men

scientific article

List of works by Margreet Bakker

A Novel Astrovirus-Like RNA Virus Detected in Human Stool

A highly virulent variant of HIV-1 circulating in the Netherlands

A novel genus in the order Picornavirales detected in human stool

Absence of seroreversion in 80 HAART-treated HIV-1 seropositive patients with at least five-years undetectable plasma HIV-1 viral load

Adenovirus types 5 and 35 seroprevalence in AIDS risk groups supports type 35 as a vaccine vector

Altered dynamics and differential infection profiles of lymphoid and myeloid cell subsets during acute and chronic HIV-1 infection

Association between gp120 envelope V1V2 and V4V5 variable loop profiles in a defined HIV-1 transmission cluster

Autologous antibody capture to enrich immunogenic viruses for viral discovery

Broad cross-clade T-cell responses to gag in individuals infected with human immunodeficiency virus type 1 non-B clades (A to G): importance of HLA anchor residue conservation

CD32+CD4+ T Cells Are Highly Enriched for HIV DNA and Can Support Transcriptional Latency

Cell-associated HIV-1 RNA predicts viral rebound and disease progression after discontinuation of temporary early ART

Cellular levels of HIV unspliced RNA from patients on combination antiretroviral therapy with undetectable plasma viremia predict the therapy outcome ⬇️

Characterization of an HIV-1 group M variant that is distinct from the known subtypes

Codon and amino acid usage in retroviral genomes is consistent with virus-specific nucleotide pressure

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

Dendritic cells potently purge latent HIV-1 beyond TCR-stimulation, activating the PI3K-Akt-mTOR pathway

Differences in HIV Type 1 RNA Plasma Load Profile of Closely Related Cocirculating Ethiopian Subtype C Strains: C and C′

Easy and Accurate Reconstruction of Whole HIV Genomes from Short-Read Sequence Data

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing

HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients

HIV-1 dual infection is associated with faster CD4+ T-cell decline in a cohort of men with primary HIV infection

HIV-1 dual infection is associated with faster CD4+T cell decline in a cohort of men with primary HIV infection.

Has the rate of CD4 cell count decline before initiation of antiretroviral therapy changed over the course of the Dutch HIV epidemic among MSM?

High Current CD4+ T Cell Count Predicts Suboptimal Adherence to Antiretroviral Therapy

High prevalence of hepatitis B virus dual infection with genotypes A and G in HIV-1 infected men in Amsterdam, the Netherlands, during 2000-2011

Highly sensitive methods based on seminested real-time reverse transcription-PCR for quantitation of human immunodeficiency virus type 1 unspliced and multiply spliced RNA and proviral DNA.

Human immunodeficiency virus type 1 gp120 envelope characteristics associated with disease progression differ in family members infected with genetically similar viruses

Identification of a new genotype of Torque Teno Mini virus

Identification of alternative amino acid substitutions in drug-resistant variants of the HIV-1 reverse transcriptase

Incidence of human immunodeficiency virus type 1 dual infections in Amsterdam, The Netherlands, during 2003-2007.

Increased multinucleoside drug resistance and decreased replicative capacity of a human immunodeficiency virus type 1 variant with an 8-amino-Acid insert in the reverse transcriptase

Lack of detection of XMRV in seminal plasma from HIV-1 infected men in The Netherlands

Major decline of hepatitis C virus incidence rate over two decades in a cohort of drug users

Modest deviations from optimal adherence to antiretroviral therapy promote residual HIV-1 replication in the absence of virological rebound in plasma.

Modest nonadherence to antiretroviral therapy promotes residual HIV-1 replication in the absence of virological rebound in plasma

Multiple transmissions of a stable human leucocyte antigen-B27 cytotoxic T-cell-escape strain of HIV-1 in The Netherlands

Novel replication-incompetent vector derived from adenovirus type 11 (Ad11) for vaccination and gene therapy: low seroprevalence and non-cross-reactivity with Ad5.

Performance of VIDISCA-454 in feces-suspensions and serum

Phenotypic and genotypic comparisons of CCR5- and CXCR4-tropic human immunodeficiency virus type 1 biological clones isolated from subtype C-infected individuals

Routine HIV-1 genotyping as a tool to identify dual infections

Steady increase in cellular HIV-1 load during the asymptomatic phase of untreated infection despite stable plasma viremia

Survey of the temporal changes in HIV-1 replicative fitness in the Amsterdam Cohort

The evolution of subtype B HIV-1 tat in the Netherlands during 1985-2012.

Translational HIV-1 research: from routine diagnostics to new virology insights in Amsterdam, the Netherlands during 1983-2013

Transmission of Risk-Group Specific HIV-1 Strains Among Dutch Drug Users for More Than 20 Years and Their Replacement by Nonspecific Strains After Switching to Low-Harm Drug Practices ⬇️

Transmission of two distinct HIV type 1 strains to an individual that were harbored for many years by another

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

Viral load levels measured at set-point have risen over the last decade of the HIV epidemic in the Netherlands

Widespread hepatitis B virus genotype G (HBV-G) infection during the early years of the HIV epidemic in the Netherlands among men who have sex with men