List of works - Fereydoun Hormozdiari

A high-quality human reference panel reveals the complexity and distribution of genomic structural variants

scientific article published on 06 October 2016

Alu repeat discovery and characterization within human genomes

scientific article

An integrated map of structural variation in 2,504 human genomes

scientific article

Biomolecular network motif counting and discovery by color coding

scientific article

Characteristics of de novo structural changes in the human genome

scientific article

Combinatorial Approach for Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders

article

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

scientific article published on 15 May 2009

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data

scientific article

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing

scientific article

Discovery of tandem and interspersed segmental duplications using high throughput sequencing

Discovery of tandem and interspersed segmental duplications using high-throughput sequencing

scientific article published on 01 October 2019

Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

scientific article published on 25 October 2019

From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer

scientific article published on July 2012

Functional disease architectures reveal unique biological role of transposable elements

scientific article published on 06 September 2019

Genetic variation associated with increased insecticide resistance in the malaria mosquito, Anopheles coluzzii.

scientific article published on 4 April 2018

Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA.

scientific article

Genomic Patterns of De Novo Mutation in Simplex Autism.

scientific article published on 27 September 2017

Global diversity, population stratification, and selection of human copy-number variation

scientific article

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

scientific article

Great ape genetic diversity and population history

scientific article published on 03 July 2013

High-resolution comparative analysis of great ape genomes

scientific article published in Science

How bioinformatics and open data can boost basic science in countries and universities with limited resources

scientific article published on 01 March 2019

Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer

scientific article published on 21 March 2012

Kevlar: A Mapping-Free Framework for Accurate Discovery of De Novo Variants ⬇️

scientific article published on 23 July 2019

Mapping copy number variation by population-scale genome sequencing

scientific article

Meltos: multi-sample tumor phylogeny reconstruction for structural variants

scientific article published on 01 February 2020

MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

scientific article published on 31 May 2009

Multi-platform discovery of haplotype-resolved structural variation in human genomes

scientific article published on 16 April 2019

Nebula: ultra-efficient mapping-free structural variant genotyper

scientific article published on 01 May 2021

Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity

scientific article published on 17 December 2018

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

scientific article

Not all scale-free networks are born equal: the role of the seed graph in PPI network evolution

scientific article

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies

scientific article published on July 2008

Personalized copy number and segmental duplication maps using next-generation sequencing.

scientific article

Protein-protein interaction network evaluation for identifying potential drug targets.

scientific article published in May 2010

Rates and patterns of great ape retrotransposition

scientific article published on 24 July 2013

Relationship between insertion/deletion (indel) frequency of proteins and essentiality

scientific article

Resolving the complexity of the human genome using single-molecule sequencing

scientific article

Simultaneous structural variation discovery among multiple paired-end sequenced genomes

scientific article published on 2 November 2011

TAD fusion score: discovery and ranking the contribution of deletions to genome structure

scientific article published on 21 March 2019

Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases

scientific article published on 13 February 2017

The discovery of integrated gene networks for autism and related disorders

scientific article

The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study.

scientific article published in February 2009

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

scientific article

Toolkit for automated and rapid discovery of structural variants

scientific article published on 2 June 2017

Towards improved assessment of functional similarity in large-scale screens: a study on indel length

scientific article published on January 2010

Whole-genome sequencing of individuals from a founder population identifies candidate genes for asthma

scientific article

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

scientific article

mrsFAST: a cache-oblivious algorithm for short-read mapping.

scientific article

List of works by Fereydoun Hormozdiari

A high-quality human reference panel reveals the complexity and distribution of genomic structural variants

Alu repeat discovery and characterization within human genomes

An integrated map of structural variation in 2,504 human genomes

Biomolecular network motif counting and discovery by color coding

Characteristics of de novo structural changes in the human genome

Combinatorial Approach for Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing

Discovery of tandem and interspersed segmental duplications using high throughput sequencing

Discovery of tandem and interspersed segmental duplications using high-throughput sequencing

Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer

Functional disease architectures reveal unique biological role of transposable elements

Genetic variation associated with increased insecticide resistance in the malaria mosquito, Anopheles coluzzii.

Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA.

Genomic Patterns of De Novo Mutation in Simplex Autism.

Global diversity, population stratification, and selection of human copy-number variation

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

Great ape genetic diversity and population history

High-resolution comparative analysis of great ape genomes

How bioinformatics and open data can boost basic science in countries and universities with limited resources

Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer

Kevlar: A Mapping-Free Framework for Accurate Discovery of De Novo Variants ⬇️

Mapping copy number variation by population-scale genome sequencing

Meltos: multi-sample tumor phylogeny reconstruction for structural variants

MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

Multi-platform discovery of haplotype-resolved structural variation in human genomes

Multi-platform discovery of haplotype-resolved structural variation in human genomes

Nebula: ultra-efficient mapping-free structural variant genotyper

Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

Not all scale-free networks are born equal: the role of the seed graph in PPI network evolution

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies

Personalized copy number and segmental duplication maps using next-generation sequencing.

Protein-protein interaction network evaluation for identifying potential drug targets.

Rates and patterns of great ape retrotransposition

Relationship between insertion/deletion (indel) frequency of proteins and essentiality

Resolving the complexity of the human genome using single-molecule sequencing

Simultaneous structural variation discovery among multiple paired-end sequenced genomes

TAD fusion score: discovery and ranking the contribution of deletions to genome structure

Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases

The discovery of integrated gene networks for autism and related disorders

The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study.

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

Toolkit for automated and rapid discovery of structural variants

Towards improved assessment of functional similarity in large-scale screens: a study on indel length

Whole-genome sequencing of individuals from a founder population identifies candidate genes for asthma

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

mrsFAST: a cache-oblivious algorithm for short-read mapping.