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List of works by Duncan Odom

A CTCF-independent role for cohesin in tissue-specific transcription

scientific article

A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden

scientific article

A feedback loop between the liver-enriched transcription factor network and miR-122 controls hepatocyte differentiation

scientific article published on 12 September 2011

A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division

scientific article published on 15 April 2020

A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.

scientific article

AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation

scientific article published on 7 November 2013

Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders

scientific article

Ageing-associated DNA methylation dynamics are a molecular readout of lifespan variation among mammalian species.

scientific article published on 16 February 2018

Aging increases cell-to-cell transcriptional variability upon immune stimulation

scientific article published on March 2017

Bookmarking by Non-pioneer Transcription Factors during Liver Development Establishes Competence for Future Gene Activation

scientific article published on 01 February 2020

CTCF and cohesin: linking gene regulatory elements with their targets

scientific article published on March 2013

CTCF maintains regulatory homeostasis of cancer pathways

scientific article published on 07 August 2018

Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor.

scientific article

ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

scientific article

Charge transport through DNA four-way junctions

scientific article published on May 2001

Charting the transcriptional regulatory changes in mouse liver during fasting

scientific article

Chromosome assembly of large and complex genomes using multiple references

scientific article published on 19 October 2018

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains

scientific article published on 07 January 2020

Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes

scientific article

Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States.

scientific article

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

scientific journal article

Cohesin's role as an active chromatin domain anchorage revealed

scientific article

Comparative Genomics: One for all.

scientific article published on 11 February 2016

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture

scientific article published on 26 February 2015

Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression.

scientific article published on 27 November 2017

Control of developmental regulators by Polycomb in human embryonic stem cells

scientific article (publication date: 21 April 2006)

Control of pancreas and liver gene expression by HNF transcription factors

scientific article

Cooperativity and rapid evolution of cobound transcription factors in closely related mammals

scientific article

Core transcriptional regulatory circuitry in human hepatocytes

scientific article published on 2 May 2006

Crisflash: open-source software to generate CRISPR guide RNAs against genomes annotated with individual variation

scientific article published on 01 September 2019

Decoupling of evolutionary changes in transcription factor binding and gene expression in mammals

scientific article

Enhancer evolution across 20 mammalian species

scientific article

Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates

scientific article published on 26 February 2013

Epigenetic predictors of maximum lifespan and other life history traits in mammals

scientific article published on 18 May 2021

Evolution of transcription factor binding in metazoans - mechanisms and functional implications

scientific article

Evolution of transcriptional control in mammals

scientific article

Extensive compensatory cis-trans regulation in the evolution of mouse gene expression

scientific article

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

scientific article

Generalizing complexity: a fruitful partnership of functional genomics and systems biology ⬇️

scientific article published on February 20, 2012

Genome-scale validation of deep-sequencing libraries

scientific article

Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues

scientific article

Genome-wide analysis of menin binding provides insights into MEN1 tumorigenesis

scientific article

Gibbon genome and the fast karyotype evolution of small apes

scientific article

Global gene expression profiling reveals SPINK1 as a potential hepatocellular carcinoma marker

scientific article

Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

scientific article

High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface

scientific article

How to evaluate a graduate studentship, or choosing the right doctoral advisor ⬇️

scientific article published on April 29, 2013

IL-7-dependent compositional changes within the γδ T cell pool in lymph nodes during ageing lead to an unbalanced anti-tumour response

scientific article published on 08 July 2019

Identification of Transcription Factor–DNA Interactions In Vivo ⬇️

scientific article published on January 1, 2011

Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation

scientific article

Insights into hominid evolution from the gorilla genome sequence

scientific article

Integrative detection and analysis of structural variation in cancer genomes

scientific article published on 10 September 2018

Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution.

scientific article

LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions

scientific article published on 18 February 2021

Latent regulatory potential of human-specific repetitive elements

scientific article published on 13 December 2012

Long-range oxidative damage in DNA/RNA duplexes

scientific article published in July 2001

Mitochondrial heteroplasmy in vertebrates using ChIP-sequencing data

scientific article

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

scientific article

Mutational landscape of a chemically-induced mouse model of liver cancer

scientific article published on 26 June 2018

NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth

scholarly article

NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs

scientific article

Nuclear transcription factors in mammalian mitochondria

scientific article

Oxidative Repair of a Thymine Dimer in DNA from a Distance by a Covalently Linked Organic Intercalator

article

Pervasive lesion segregation shapes cancer genome evolution

scientific article published on 24 June 2020

Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes.

scientific article

Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved

scientific article published on 15 April 2016

Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia

scientific article published on 03 April 2019

Rapid turnover of long noncoding RNAs and the evolution of gene expression

scientific article (publication date: 2012)

Recognition and reaction of metallointercalators with DNA.

scientific article

Regulatory Divergence of Transcript Isoforms in a Mammalian Model System

scientific article published on 4 September 2015

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

scientific article published on 21 March 2018

Replication-timing boundaries facilitate cell-type and species-specific regulation of a rearranged human chromosome in mouse

scientific article

Robust charge transport in DNA double crossover assemblies

scientific article published on July 2000

Site-specific inhibition of transcription factor binding to DNA by a metallointercalator

scientific article

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci

scientific article published on 01 October 2018

Species-specific transcription in mice carrying human chromosome 21

scientific article

Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis

scientific article published on 01 July 2018

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

scientific article published on 19 March 2019

Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis

scientific article

Survival strategies for choosing the right postdoc position

scientific article

Synthesis and characterization of magnesium and zinc complexes of 1,4,7-triazacyclononane-N-acetate. Potential models for the active site of RuBisCo

scholarly article by Duncan Odom et al published January 2000 in Inorganica Chimica Acta

The Evolutionary Fates of a Large Segmental Duplication in Mouse

scientific article published on 2 July 2016

The emergence of piRNAs against transposon invasion to preserve mammalian genome integrity

scientific article

The evolutionary landscape of alternative splicing in vertebrate species

scientific article

The mechanisms shaping the single-cell transcriptional landscape.

scientific article

The opposing transcriptional functions of Sin3a and c-Myc are required to maintain tissue homeostasis

scientific article published on 20 November 2011

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

scientific article published on 21 May 2007

Transcriptional activity and strain-specific history of mouse pseudogenes

scientific article published on 29 July 2020

Transcriptional regulatory networks downstream of TAL1/SCL in T-cell acute lymphoblastic leukemia

scientific article published on 18 April 2006

Transcriptional regulatory networks in Saccharomyces cerevisiae

scientific article

Transcriptional role of cyclin D1 in development revealed by a genetic-proteomic screen.

scientific article published on January 2010

Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions

scientific article published on 2 February 2016

Transducin-like enhancer protein 1 mediates estrogen receptor binding and transcriptional activity in breast cancer cells

scientific article published on 2 May 2011

Unwinding Limb Development

article

Variations in DNA Charge Transport with Nucleotide Composition and Sequence

article

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages.

scientific article published in February 2012

Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

scientific article (publication date: 20 January 2012)

When the Snake Lost Its Limbs, What Did the Mouse and Lizard Say?

scientific article published in October 2015

Zebrafish promoter microarrays identify actively transcribed embryonic genes.

scientific article published on 4 August 2006

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