List of works - Alexey Bochkarev

2'-O-methyl-modified phosphorothioate antisense oligonucleotides have reduced non-specific effects in vitro

scientific article published on 02 April 2004

An epidemiologically significant epitope of a 1998 human influenza virus neuraminidase forms a highly hydrated interface in the NA-antibody complex

scientific article

An intact SAM-dependent methyltransferase fold is encoded by the human endothelin-converting enzyme-2 gene

scientific article

Antibody epitopes on the neuraminidase of a recent H3N2 influenza virus (A/Memphis/31/98).

scientific article

Circular dichroism spectra and electrophoretic mobility shift assays show that human replication protein A binds and melts intramolecular G-quadruplex structures

scientific article

Correction: Structural and Chemical Profiling of the Human Cytosolic Sulfotransferases

scientific article

Crystal structure of a binary complex between human GCN5 histone acetyltransferase domain and acetyl coenzyme A

scientific article

Crystal structure of dTDP-4-keto-6-deoxy-D-hexulose 3,5-epimerase from Methanobacterium thermoautotrophicum complexed with dTDP

scientific article

Crystal structure of the CorA Mg2+ transporter

scientific article

Crystal structure of the DNA-binding domain of the Epstein-Barr virus origin-binding protein EBNA 1

scientific article

Crystal structures of human sulfotransferases SULT1B1 and SULT1C1 complexed with the cofactor product adenosine-3'- 5'-diphosphate (PAP).

scientific article published in September 2006

Effects of ssDNA sequences on non-sequence-specific protein binding

scientific article published in May 2006

First crystallographic models of human TBC domains in the context of a family-wide structural analysis

scientific article

From RPA to BRCA2: lessons from single-stranded DNA binding by the OB-fold

scientific article published on February 2004

Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms

scientific article published on 13 November 2006

Glyoxylate and pyruvate are antagonistic effectors of the Escherichia coli IclR transcriptional regulator

scientific article

High throughput crystallography at SGC Toronto: an overview.

scientific article

Human HDAC7 Harbors a Class IIa Histone Deacetylase-specific Zinc Binding Motif and Cryptic Deacetylase Activity

scientific article

Human replication protein A (RPA) binds a primer-template junction in the absence of its major ssDNA-binding domains

scientific article published on 26 March 2004

In situ proteolysis for protein crystallization and structure determination

scientific article

Independent and coordinated functions of replication protein A tandem high affinity single-stranded DNA binding domains

scientific article

Sequence-specific recognition of a PxLPxI/L motif by an ankyrin repeat tumbler lock

scientific article

Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein A

scientific article

Structural and biochemical study of effector molecule recognition by the E.coli glyoxylate and allantoin utilization regulatory protein AllR.

scientific article published on 3 March 2006

Structural and chemical profiling of the human cytosolic sulfotransferases

scientific article

Structural basis for molecular recognition and presentation of histone H3 by WDR5

scientific article

Structural basis for the recognition of DNA repair proteins UNG2, XPA, and RAD52 by replication factor RPA

scientific article

Structural basis of allele variation of human thiopurine-S-methyltransferase

scientific article

Structural basis of inhibition of the human NAD+-dependent deacetylase SIRT5 by suramin

scientific article

Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA

scientific article

Structure of the major single-stranded DNA-binding domain of replication protein A suggests a dynamic mechanism for DNA binding

scientific article

Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA.

scientific article

Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA

scientific article

Structures of Human DPP7 Reveal the Molecular Basis of Specific Inhibition and the Architectural Diversity of Proline-Specific Peptidases

scientific article

The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1

scientific article

The Crystal Structure of the SV40 T-Antigen Origin Binding Domain in Complex with DNA

scientific article

The Mechanism of Protein Crystal Growth from Lipid Layers

The RPA32 Subunit of Human Replication Protein A Contains a Single-stranded DNA-binding Domain ⬇️

scientific article published on February 13, 1998

The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism

scientific article

The crystal structure of the complex of replication protein A subunits RPA32 and RPA14 reveals a mechanism for single-stranded DNA binding

scientific article

p53 transcriptional activation domain: a molecular chameleon?

scientific article published in March 2006

List of works by Alexey Bochkarev

2'-O-methyl-modified phosphorothioate antisense oligonucleotides have reduced non-specific effects in vitro

An epidemiologically significant epitope of a 1998 human influenza virus neuraminidase forms a highly hydrated interface in the NA-antibody complex

An intact SAM-dependent methyltransferase fold is encoded by the human endothelin-converting enzyme-2 gene

Antibody epitopes on the neuraminidase of a recent H3N2 influenza virus (A/Memphis/31/98).

Circular dichroism spectra and electrophoretic mobility shift assays show that human replication protein A binds and melts intramolecular G-quadruplex structures

Correction: Structural and Chemical Profiling of the Human Cytosolic Sulfotransferases

Crystal structure of a binary complex between human GCN5 histone acetyltransferase domain and acetyl coenzyme A

Crystal structure of dTDP-4-keto-6-deoxy-D-hexulose 3,5-epimerase from Methanobacterium thermoautotrophicum complexed with dTDP

Crystal structure of the CorA Mg2+ transporter

Crystal structure of the DNA-binding domain of the Epstein-Barr virus origin-binding protein EBNA 1

Crystal structures of human sulfotransferases SULT1B1 and SULT1C1 complexed with the cofactor product adenosine-3'- 5'-diphosphate (PAP).

Effects of ssDNA sequences on non-sequence-specific protein binding

First crystallographic models of human TBC domains in the context of a family-wide structural analysis

From RPA to BRCA2: lessons from single-stranded DNA binding by the OB-fold

Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms

Glyoxylate and pyruvate are antagonistic effectors of the Escherichia coli IclR transcriptional regulator

High throughput crystallography at SGC Toronto: an overview.

Human HDAC7 Harbors a Class IIa Histone Deacetylase-specific Zinc Binding Motif and Cryptic Deacetylase Activity

Human replication protein A (RPA) binds a primer-template junction in the absence of its major ssDNA-binding domains

In situ proteolysis for protein crystallization and structure determination

Independent and coordinated functions of replication protein A tandem high affinity single-stranded DNA binding domains

Sequence-specific recognition of a PxLPxI/L motif by an ankyrin repeat tumbler lock

Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein A

Structural and biochemical study of effector molecule recognition by the E.coli glyoxylate and allantoin utilization regulatory protein AllR.

Structural and chemical profiling of the human cytosolic sulfotransferases

Structural basis for molecular recognition and presentation of histone H3 by WDR5

Structural basis for the recognition of DNA repair proteins UNG2, XPA, and RAD52 by replication factor RPA

Structural basis of allele variation of human thiopurine-S-methyltransferase

Structural basis of inhibition of the human NAD+-dependent deacetylase SIRT5 by suramin

Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA

Structure of the major single-stranded DNA-binding domain of replication protein A suggests a dynamic mechanism for DNA binding

Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA.

Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA

Structures of Human DPP7 Reveal the Molecular Basis of Specific Inhibition and the Architectural Diversity of Proline-Specific Peptidases

The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1

The Crystal Structure of the SV40 T-Antigen Origin Binding Domain in Complex with DNA

The Mechanism of Protein Crystal Growth from Lipid Layers

The RPA32 Subunit of Human Replication Protein A Contains a Single-stranded DNA-binding Domain ⬇️

The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism

The crystal structure of the complex of replication protein A subunits RPA32 and RPA14 reveals a mechanism for single-stranded DNA binding

p53 transcriptional activation domain: a molecular chameleon?