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List of works by Evgeny Nudler

A Magic Spot in Genome Maintenance

scientific article published on 5 December 2016

A Ratchet Mechanism of Transcription Elongation and Its Control

A decade of riboswitches

scientific article

A unified model of transcription elongation: what have we learned from single-molecule experiments?

scientific article

Allosteric Activation of SARS-CoV-2 RNA-Dependent RNA Polymerase by Remdesivir Triphosphate and Other Phosphorylated Nucleotides

scientific article

An Allosteric Path to Transcription Termination

scientific article (publication date: December 2007)

An allosteric mechanism of Rho-dependent transcription termination

scientific article

An autocatalytic mechanism of protein nitrosylation

scientific article published on December 2000

Analysis of the Intrinsic Transcription Termination Mechanism and Its Control

article

Antibiotic killing through oxidized nucleotides

scientific article published on 14 February 2018

Assessment of nitric oxide signals by triiodide chemiluminescence

scholarly article

Bacillus anthracis-derived nitric oxide is essential for pathogen virulence and survival in macrophages

scholarly article

Bacterial Nitric Oxide Extends the Lifespan of C. elegans

Bacterial gasotransmitters: an innate defense against antibiotics

scientific article

Bacterial nitric-oxide synthases operate without a dedicated redox partner

scientific article

Bacteriophage T4 Alc protein: a transcription termination factor sensing local modification of DNA.

scientific article published in October 1993

Basic mechanism of transcription by RNA polymerase II.

scientific article published on 06 September 2012

Catalysis of S-nitrosothiols formation by serum albumin: the mechanism and implication in vascular control

scientific journal article

Characterization of Protein–Nucleic Acid Interactions that are Required for Transcription Processivity

scientific article published on 01 January 2003

Clamping the clamp of RNA polymerase

scientific article published on April 2011

Control of intrinsic transcription termination by N and NusA: the basic mechanisms

scientific article published on 01 November 2001

Control of plasma nitric oxide bioactivity by perfluorocarbons: physiological mechanisms and clinical implications

scientific article published on 22 November 2004

Cooperation between RNA polymerase molecules in transcription elongation

scientific article published in May 2003

Cooperation between translating ribosomes and RNA polymerase in transcription elongation

scientific article published on April 2010

Cooperation of GroEL/GroES and DnaK/DnaJ heat shock proteins in preventing protein misfolding in Escherichia coli ⬇️

scientific article published on November 1, 1992

Coupling between transcription termination and RNA polymerase inchworming.

scientific article

Design of Peptoid-peptide Macrocycles to Inhibit the β-catenin TCF Interaction in Prostate Cancer

scientific article published in Nature Communications

Discontinuous mechanism of transcription elongation

scientific article

Dynamics of endogenous Hsp70 synthesis in the brain of olfactory bulbectomized mice

scientific article

Endogenous nitric oxide protects bacteria against a wide spectrum of antibiotics

scientific article

Exogenous Hsp70 delays senescence and improves cognitive function in aging mice.

scientific article

Extensive functional overlap between sigma factors in Escherichia coli.

scientific article

Flipping riboswitches

scientific article published on July 2006

Functional organization of hsp70 cluster in camel (Camelus dromedarius) and other mammals.

scientific article

Gene control by large noncoding RNAs

scientific article

Glycogen at the Crossroad of Stress Resistance, Energy Maintenance, and Pathophysiology of Aging

Glycogen controls Caenorhabditis elegans lifespan and resistance to oxidative stress

scientific article

H2S: a universal defense against antibiotics in bacteria

scientific article

HS: a Bacterial Defense Mechanism Against the Host Immune Response

scientific article published on 19 December 2018

Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase.

scientific article

Hsp70 chaperone rescues C6 rat glioblastoma cells from oxidative stress by sequestration of aggregating GAPDH.

scientific article published on 20 December 2015

Inheritance of repressed chromatin domains during S phase requires the histone chaperone NPM1

scientific article published on 27 April 2022

Isolation and characterization of sigma(70)-retaining transcription elongation complexes from Escherichia coli

scientific article published on 01 August 2001

Isolation and characterization of the heat shock RNA 1

scientific article published in January 2009

Jamming the ratchet of transcription

scientific article published on August 2008

Linking RNA polymerase backtracking to genome instability in E. coli

scientific article published on August 2011

Looking for a promoter in 3D.

scientific article published in February 2013

MPTH-24. CYSTATHIONE β-SYNTHASE EXPRESSION IN ASTROCYTOMAS INCREASES WITH HISTOPATHOLOGICAL GRADE

Macromolecular micromovements: how RNA polymerase translocates

scientific article

Mechanism of H2S-mediated protection against oxidative stress in Escherichia coli

scientific article published on 22 May 2017

Mechanism of biofilm-mediated stress resistance and lifespan extension in C. elegans

scientific article

Mechanistic insights into transcription coupled DNA repair

scientific article

Mechanistic model of the elongation complex of Escherichia coli RNA polymerase

article

Methicillin-resistant Staphylococcus aureus bacterial nitric-oxide synthase affects antibiotic sensitivity and skin abscess development

scientific article published on 15 January 2013

Methods of walking with the RNA polymerase

scientific article

Modular RNA heats up.

scientific article

Motion and enzymatic degradation of DNA in the atomic force microscope.

scientific article

NO-mediated cytoprotection: instant adaptation to oxidative stress in bacteria

scientific article

Natural RNA Polymerase Aptamers Regulate Transcription in E. coli

scientific article published on 19 June 2017

New HSF1 inducer as a therapeutic agent in a rodent model of Parkinson's disease

scientific article published on 26 April 2018

New insights into the mechanism of heat shock response activation

scientific article

Nitric oxide produced by bacteria extends Caenorhabditis elegans lifespan

Paf1C regulates RNA polymerase II progression by modulating elongation rate

scientific article published on 27 June 2019

Pervasive Transcription-coupled DNA repair in E. coli

scientific article published on 30 March 2022

Phosphorylation of Ser8 promotes zinc-induced dimerization of the amyloid-β metal-binding domain

article published in 2014

Protein S-Nitrosylation: Enzymatically Controlled, but Intrinsically Unstable, Post-translational Modification

scientific article published in February 2018

RNA Polymerase Backtracking in Gene Regulation and Genome Instability ⬇️

scientific article published on June 22, 2012

RNA polymerase active center: the molecular engine of transcription

scientific article published on January 2009

RNA polymerase and the ribosome: the close relationship

scientific article

RNA polymerase holoenzyme: structure, function and biological implications

scientific article

RNA polymerase stalls in a post-translocated register and can hyper-translocate

scientific article published on September 2012

RNA polymerase: the vehicle of transcription

scientific article published on 14 February 2008

RNA-mediated response to heat shock in mammalian cells

scientific journal article

Ratcheting of RNA polymerase toward structural principles of RNA polymerase operations

scientific article

Rates and mechanisms of bacterial mutagenesis from maximum-depth sequencing

scientific article published on 22 June 2016

Reactive oxygen species as the long arm of bactericidal antibiotics

scientific article published on 06 May 2019

Reading of the non-template DNA by transcription elongation factors.

scientific article published on 14 May 2018

Response to Klyuyev and Vassylyev: on the mechanism of tagetitoxin inhibition of transcription

scientific article

Rethinking transcription coupled DNA repair

scientific article

Riboswitch control of Rho-dependent transcription termination

scientific article published on 19 March 2012

Riboswitch-dependent gene regulation and its evolution in the plant kingdom

scientific article

Riboswitches in regulation of Rho-dependent transcription termination

scholarly article by Sergey Proshkin published in October 2014

S-nitrosylation of peroxiredoxin 1 contributes to viability of lung epithelial cells during Bacillus anthracis infection

scientific article

S-nitrosylation signaling in Escherichia coli.

scientific article published on 12 June 2012

Sensing Small Molecules by Nascent RNA

scientific article (publication date: November 2002)

Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria

scientific article (publication date: 27 November 2002)

Spatial organization of transcription elongation complex in Escherichia coli

scientific article

Strategies and Methods of Transcription-Coupled Repair Studies In Vitro and In Vivo

scientific article published on 3 May 2017

Structural Basis of Dot1L Stimulation by Histone H2B Lysine 120 Ubiquitination

scientific article published on 10 April 2019

Structure of RNA polymerase bound to ribosomal 30S subunit

scientific article published on 13 October 2017

Structure of the Cdc48 ATPase with its ubiquitin-binding cofactor Ufd1-Npl4

scientific article published on 02 July 2018

Structures of monomeric and dimeric PRC2:EZH1 reveal flexible modules involved in chromatin compaction

scientific article published on 29 January 2021

Tagetitoxin inhibits RNA polymerase through trapping of the trigger loop

scientific article

Targeting eEF1A by a Legionella pneumophila effector leads to inhibition of protein synthesis and induction of host stress response

scientific article

Template switching by RNA polymerase II in vivo. Evidence and implications from a retroviral system

scientific article published on December 2002

Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli

scientific article

The Molecular Architecture of Native BBSome Obtained by an Integrated Structural Approach

scientific article published on 11 July 2019

The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation

scientific article published on 30 November 2012

The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

scientific article

The mechanism of intrinsic transcription termination.

scientific article

The ratcheted and ratchetable structural states of RNA polymerase underlie multiple transcriptional functions

scientific article

The riboswitch control of bacterial metabolism

scientific article

The riboswitch-mediated control of sulfur metabolism in bacteria

scientific article

The structure of a virus-encoded nucleosome

scientific article published on 29 April 2021

The translation elongation factor eEF1A1 couples transcription to translation during heat shock response

scientific article published in 2014

Therapeutic effect of exogenous hsp70 in mouse models of Alzheimer's disease

scientific article

Thermodynamic and kinetic modeling of transcriptional pausing

scholarly article

Towards the unified principles of transcription termination

scientific article published on 30 December 2019

Transcription elongation: structural basis and mechanisms

scientific article

Transcription factor YcjW controls the emergency H2S production in E. coli

scientific article published on 28 June 2019

Transcription inactivation through local refolding of the RNA polymerase structure

scientific article

Transcription processivity: protein-DNA interactions holding together the elongation complex

scientific article

Transcription regulatory elements are punctuation marks for DNA replication

scholarly article

Transcription termination and anti-termination in E. coli

scientific article

Transcription through the roadblocks: the role of RNA polymerase cooperation

scientific article

Transcription-replication encounters, consequences and genomic instability

scientific article published on April 2013

Transcriptional approaches to riboswitch studies

scientific article published on January 2009

Trigger loop folding determines transcription rate of Escherichia coli's RNA polymerase

scientific article

Unfolding the bridge between transcription and translation

scientific article published on July 2012

Upregulation of cystathione β-synthase and p70S6K/S6 in neonatal hypoxic ischemic brain injury.

scientific article

UvrD facilitates DNA repair by pulling RNA polymerase backwards

scientific article published on 8 January 2014

Variation in FPOP Measurements Is Primarily Caused by Poor Peptide Signal Intensity

scientific article published on 25 June 2018

iRAPs curb antisense transcription in E. coli

scientific article published on 01 November 2019

ppGpp couples transcription to DNA repair in E. coli

scientific article

sRNA-Mediated Control of Transcription Termination in E. coli

scientific article

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