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List of works by Christopher D. Lima

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The SUMO pathway: emerging mechanisms that shape specificity, conjugation and recognition

scientific article
Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast

scientific article published in May 2000
Structural basis for E2-mediated SUMO conjugation revealed by a complex between ubiquitin-conjugating enzyme Ubc9 and RanGAP1

scientific article
Reconstitution, activities, and structure of the eukaryotic RNA exosome

scientific article
Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex

scientific article (publication date: 2 June 2005)
The RNA Exosome Targets the AID Cytidine Deaminase to Both Strands of Transcribed Duplex DNA Substrates

scientific article published on January 20, 2011
Structure of an mRNA capping enzyme bound to the phosphorylated carboxy-terminal domain of RNA polymerase II

scientific article
Structure-based analysis of catalysis and substrate definition in the HIT protein family

scientific article
The polynucleotide ligase and RNA capping enzyme superfamily of covalent nucleotidyltransferases.

scientific article
Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.

scientific article published on 28 May 2006
Specific and covalent targeting of conjugating and deconjugating enzymes of ubiquitin-like proteins

scientific article
Structure and mechanism of mRNA cap (guanine-N7) methyltransferase

scientific article
Structural and biochemical analysis of the Obg GTP binding protein

scientific article
Recognition of SUMO-modified PCNA requires tandem receptor motifs in Srs2

scientific article
Structure and mechanism of RNA ligase

scientific article
Structural genomics: A pipeline for providing structures for the biologist

scientific article
Structure of the Siz/PIAS SUMO E3 ligase Siz1 and determinants required for SUMO modification of PCNA

scientific article
Enzymology of RNA cap synthesis

scientific article
Taking it step by step: mechanistic insights from structural studies of ubiquitin/ubiquitin-like protein modification pathways

scientific article published on 4 October 2007
Structure of an Rrp6–RNA exosome complex bound to poly(A) RNA

scientific article
The eukaryotic RNA exosome

scientific article published on 11 February 2014
Insights into the structure, mechanism, and regulation of scavenger mRNA decapping activity

scientific journal article
Structure of the Human SENP7 Catalytic Domain and Poly-SUMO Deconjugation Activities for SENP6 and SENP7

scientific article
Mycobacterial polyketide-associated proteins are acyltransferases: proof of principle with Mycobacterium tuberculosis PapA5

scientific journal article
Structural and functional insights to ubiquitin-like protein conjugation.

scientific article
Ubiquitin-like Protein Conjugation: Structures, Chemistry, and Mechanism

scientific article published on 24 February 2017
Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel.

scientific article
Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors

scientific article published on January 2017
RNA substrate specificity and structure-guided mutational analysis of bacteriophage T4 RNA ligase 2.

scientific article published on 13 April 2004
Structural Insights to How Mammalian Capping Enzyme Reads the CTD Code

scientific article published on June 16, 2011
Structural basis for nick recognition by a minimal pluripotent DNA ligase

scientific article
Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D

scholarly article
Characterization of PKCI and comparative studies with FHIT, related members of the HIT protein family

scientific article
RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward

scientific article published on 01 October 2006
Recognition of Lys48-Linked Di-ubiquitin and Deubiquitinating Activities of the SARS Coronavirus Papain-like Protease

scientific article published on May 2016
Structure, function, and mechanism of the phenylacetate pathway hot dog-fold thioesterase PaaI.

scientific article published on 7 February 2006
Determinants of Small Ubiquitin-like Modifier 1 (SUMO1) Protein Specificity, E3 Ligase, and SUMO-RanGAP1 Binding Activities of Nucleoporin RanBP2

scientific article
Crystal structure of PapA5, a phthiocerol dimycocerosyl transferase from Mycobacterium tuberculosis.

scientific article
Designed semisynthetic protein inhibitors of Ub/Ubl E1 activating enzymes.

scientific article published on February 2010
SUMO-2 and PIAS1 modulate insoluble mutant huntingtin protein accumulation

scientific article published on 18 July 2013
Structural basis for catalytic activation by the human ZNF451 SUMO E3 ligase

scientific journal article
Nuclear RNA Exosome at 3.1 Å Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3.

scientific article published on 20 October 2016
Purification of SUMO conjugating enzymes and kinetic analysis of substrate conjugation.

scientific article published on January 2009
ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2.

scientific article published on 23 January 2018
Conformational changes in E. coli DNA topoisomerase I

scientific article
A dual interface determines the recognition of RNA polymerase II by RNA capping enzyme.

scientific article
SARS hCoV papain-like protease is a unique Lys48 linkage-specific di-distributive deubiquitinating enzyme

scientific article published on June 2015
Reconstitution of RNA exosomes from human and Saccharomyces cerevisiae cloning, expression, purification, and activity assays.

scientific article published on January 2008
Single-particle EM reveals extensive conformational variability of the Ltn1 E3 ligase.

scientific article published on 14 January 2013
Capturing a substrate in an activated RING E3/E2-SUMO complex

scientific article published on 10 August 2016

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