List of works - Reza M. Salek

1 H MAS NMR Spectroscopy of Tissues

A Metadata description of the data in "A metabolomic comparison of urinary changes in type 2 diabetes in mouse, rat, and human.".

scientific article

A Tool to Encourage Minimum Reporting Guideline Uptake for Data Analysis in Metabolomics

scientific article published in 2019

A decade after the metabolomics standards initiative it's time for a revision.

scientific article published on 26 September 2017

A metabolomic comparison of mouse models of the Neuronal Ceroid Lipofuscinoses

scientific article

A metabolomic comparison of urinary changes in type 2 diabetes in mouse, rat, and human

scientific article published on 26 December 2006

A metabolomic study of brain tissues from aged mice with low expression of the vesicular monoamine transporter 2 (VMAT2) gene

scientific article published on 29 November 2007

A metabolomic study of the CRND8 transgenic mouse model of Alzheimer's disease

scientific article

An introduction to metabolomics

Assessing Public Metabolomics Metadata, Towards Improving Quality.

scientific article published on 13 December 2017

Automated assembly of species metabolomes through data submission into a public repository

scientific article published in August 2017

Backbone resonance assignments of the 25kD N-terminal ATPase domain from the Hsp90 chaperone

article

Behavioural and molecular endophenotypes in psychotic disorders reveal heritable abnormalities in glutamatergic neurotransmission.

scientific article published on 31 March 2015

Biomarkers of food intake and metabolite differences between plasma and red blood cell matrices; a human metabolomic profile approach

scientific article published on 14 March 2013

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

scientific article

Compliance with minimum information guidelines in public metabolomics repositories

scientific article published on 26 September 2017

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy

scientific article

Contributors

Data standards can boost metabolomics research, and if there is a will, there is a way

scientific article

Discovering and linking public omics data sets using the Omics Discovery Index.

scientific article

Dissemination of metabolomics results: role of MetaboLights and COSMOS ⬇️

scientific article published on May 17, 2013

Dolphin 1D: Improving Automation of Targeted Metabolomics in Multi-matrix Datasets of $$^1$$ 1 H-NMR Spectra

Dolphin: a tool for automatic targeted metabolite profiling using 1D and 2D (1)H-NMR data

scientific article

ELIXIR and Toxicology: a community in development

scientific article published on 3 October 2023

Editorial: Metabolome Informatics and Statistics: Current State and Emerging Trends

scientific article published on 19 July 2016

Embedding standards in metabolomics: the Metabolomics Society data standards task group

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

scholarly article published in Metabolomics

Expanding natural product chemistry resources at the EBI

article

Expanding the use of spectral libraries in proteomics

Exposome-Explorer 2.0: an update incorporating candidate dietary biomarkers and dietary associations with cancer risk

scientific article published on 14 November 2019

From Databases to Big Data

Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud

Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links

scientific article (publication date: February 2014)

Getting the right answers: understanding metabolomics challenges

scientific article

Global open data management in metabolomics

scientific article (publication date: February 2017)

Improving sample classification by harnessing the potential of H-NMR signal chemical shifts

scientific article published in Scientific Reports

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

scientific article published in 2019

Mass spectral databases for LC/MS- and GC/MS-based metabolomics: State of the field and future prospects

scientific article (publication date: April 2016)

Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany

scientific article published on 9 October 2014

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

scientific article (publication date: 2013)

MetaboLights: An Open-Access Database Repository for Metabolomics Data

scientific article

MetaboLights: towards a new COSMOS of metabolomics data management

scientific article (publication date: October 2012)

Metabolic Phenotyping in Personalized and Public Healthcare. List of Contributors

section of a book

Metabolic differences in ripening of Solanum lycopersicum 'Ailsa Craig' and three monogenic mutants ⬇️

scientific article

Metabolome Analysis

Metabolomic applications to neuroscience: more challenges than chances?

scientific article

Metabolomic investigation of CLN6 neuronal ceroid lipofuscinosis in affected South Hampshire sheep

scientific article

Metabolomics - the stethoscope for the 21st century

scientific article published on 03 December 2020

Metabolomics continues to expand: highlights from the 2015 metabolomics conference

Metabolomics in early detection and prognosis of acute coronary syndrome

scientific article published on 27 March 2019

Metabolomics in neuroscience and neurology

Metabolomics of human breast cancer: new approaches for tumor typing and biomarker discovery

scientific article

Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas

scholarly article by Clément Frainay published in September 2018

NMR Spectroscopy of Tissues, 1 H MAS

NMR-based metabolomics in human disease diagnosis: applications, limitations, and recommendations

Navigating freely-available software tools for metabolomics analysis

scientific article

Neuroscience and Metabolomics

Omics Discovery Index - Discovering and Linking Public Omics Datasets

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

scholarly article by Kristian Peters et al published 7 December 2018 in GigaScience

Power of mzRAPP-Based Performance Assessments in MS1-Based Nontargeted Feature Detection

scientific article published in 2022

Progress in Standardization of Metabolic Phenotyping Data

Recommendations and Standardization of Biomarker Quantification Using NMR-Based Metabolomics with Particular Focus on Urinary Analysis

scientific article

Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue - a GC-TOFMS based metabolomics study

scientific article

SPLASH, a hashed identifier for mass spectra ⬇️

scientific article

SpeckTackle: JavaScript charts for spectroscopy

scientific article (publication date: 2015)

Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review

scientific article

The ABRF Metabolomics Research Group 2016 Exploratory Study: Investigation of Data Analysis Methods for Untargeted Metabolomics

scientific article published on 27 March 2020

The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry.

scientific article

The MetaboLights repository: curation challenges in metabolomics

scientific article (publication date: 2013)

The Metabolomics Society-Current State of the Membership and Future Directions

scientific article published on 03 May 2019

The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry

scientific article published on 21 October 2022

The Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.

scientific article

The Study of Mammalian Metabolism through NMR-based Metabolomics

article by Reza M. Salek et al published 2011 in Methods in Enzymology

The Time Is Right to Focus on Model Organism Metabolomes

scientific article published on 15 February 2016

The future of metabolomics in ELIXIR

scientific article published in 2017

The future of metabolomics in ELIXIR.

scientific article

The metaRbolomics Toolbox in Bioconductor and beyond

scientific article published on 23 September 2019

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience

scientific article

The role of reporting standards for metabolite annotation and identification in metabolomic studies

scientific article published on 16 October 2013

Towards standard, accessible and reproducible Metabolomics

scholarly article published 1 November 2016

Use cases, best practice and reporting standards for metabolomics in regulatory toxicology

scientific article published on 10 July 2019

mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data

scientific article

mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics

scientific article published on 13 February 2019

nmrML: a community supported open data standard for the description, storage, and exchange of NMR data

scientific article published on 16 October 2017

rDolphin: a GUI R package for proficient automatic profiling of 1D 1H-NMR spectra of study datasets

scientific article published on January 31, 2018

¹H nuclear magnetic resonance spectroscopy characterisation of metabolic phenotypes in the medulloblastoma of the SMO transgenic mice.

scientific article published on 14 September 2010

List of works by Reza M. Salek

1 H MAS NMR Spectroscopy of Tissues

A Metadata description of the data in "A metabolomic comparison of urinary changes in type 2 diabetes in mouse, rat, and human.".

A Tool to Encourage Minimum Reporting Guideline Uptake for Data Analysis in Metabolomics

A decade after the metabolomics standards initiative it's time for a revision.

A metabolomic comparison of mouse models of the Neuronal Ceroid Lipofuscinoses

A metabolomic comparison of urinary changes in type 2 diabetes in mouse, rat, and human

A metabolomic study of brain tissues from aged mice with low expression of the vesicular monoamine transporter 2 (VMAT2) gene

A metabolomic study of the CRND8 transgenic mouse model of Alzheimer's disease

An introduction to metabolomics

Assessing Public Metabolomics Metadata, Towards Improving Quality.

Automated assembly of species metabolomes through data submission into a public repository

Backbone resonance assignments of the 25kD N-terminal ATPase domain from the Hsp90 chaperone

Behavioural and molecular endophenotypes in psychotic disorders reveal heritable abnormalities in glutamatergic neurotransmission.

Biomarkers of food intake and metabolite differences between plasma and red blood cell matrices; a human metabolomic profile approach

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Compliance with minimum information guidelines in public metabolomics repositories

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy

Contributors

Data standards can boost metabolomics research, and if there is a will, there is a way

Discovering and linking public omics data sets using the Omics Discovery Index.

Dissemination of metabolomics results: role of MetaboLights and COSMOS ⬇️

Dolphin 1D: Improving Automation of Targeted Metabolomics in Multi-matrix Datasets of $$^1$$ 1 H-NMR Spectra

Dolphin: a tool for automatic targeted metabolite profiling using 1D and 2D (1)H-NMR data

ELIXIR and Toxicology: a community in development

ELIXIR and Toxicology: a community in development

Editorial: Metabolome Informatics and Statistics: Current State and Emerging Trends

Embedding standards in metabolomics: the Metabolomics Society data standards task group

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Expanding natural product chemistry resources at the EBI

Expanding the use of spectral libraries in proteomics

Exposome-Explorer 2.0: an update incorporating candidate dietary biomarkers and dietary associations with cancer risk

From Databases to Big Data

Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud

Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links

Getting the right answers: understanding metabolomics challenges

Global open data management in metabolomics

Improving sample classification by harnessing the potential of H-NMR signal chemical shifts

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

Mass spectral databases for LC/MS- and GC/MS-based metabolomics: State of the field and future prospects

Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

MetaboLights: An Open-Access Database Repository for Metabolomics Data

MetaboLights: towards a new COSMOS of metabolomics data management

Metabolic Phenotyping in Personalized and Public Healthcare. List of Contributors

Metabolic differences in ripening of Solanum lycopersicum 'Ailsa Craig' and three monogenic mutants ⬇️

Metabolome Analysis

Metabolomic applications to neuroscience: more challenges than chances?

Metabolomic investigation of CLN6 neuronal ceroid lipofuscinosis in affected South Hampshire sheep

Metabolomics - the stethoscope for the 21st century

Metabolomics continues to expand: highlights from the 2015 metabolomics conference

Metabolomics in early detection and prognosis of acute coronary syndrome

Metabolomics in neuroscience and neurology

Metabolomics of human breast cancer: new approaches for tumor typing and biomarker discovery

Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas

NMR Spectroscopy of Tissues, 1 H MAS

NMR-based metabolomics in human disease diagnosis: applications, limitations, and recommendations

Navigating freely-available software tools for metabolomics analysis

Neuroscience and Metabolomics

Omics Discovery Index - Discovering and Linking Public Omics Datasets

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

Power of mzRAPP-Based Performance Assessments in MS1-Based Nontargeted Feature Detection

Progress in Standardization of Metabolic Phenotyping Data

Recommendations and Standardization of Biomarker Quantification Using NMR-Based Metabolomics with Particular Focus on Urinary Analysis

Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue - a GC-TOFMS based metabolomics study

SPLASH, a hashed identifier for mass spectra ⬇️

SpeckTackle: JavaScript charts for spectroscopy

Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review

The ABRF Metabolomics Research Group 2016 Exploratory Study: Investigation of Data Analysis Methods for Untargeted Metabolomics

The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry.

The MetaboLights repository: curation challenges in metabolomics

The Metabolomics Society-Current State of the Membership and Future Directions

The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry

The Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.

The Study of Mammalian Metabolism through NMR-based Metabolomics

The Time Is Right to Focus on Model Organism Metabolomes

The future of metabolomics in ELIXIR