List of works - Simon Dellicour

A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages

scientific article published on 09 May 2020

An integrative taxonomic approach to assess the status of Corsican bumblebees: implications for conservation

article by Thomas Lecocq et al published 29 October 2014 in Animal Conservation

Comparative phylogeography of five bumblebees: impact of range fragmentation, range size and diet specialization

article by Simon Dellicour et al published 21 August 2015 in Biological Journal of the Linnean Society

Comparing patterns and scales of plant virus phylogeography: Rice yellow mottle virus in Madagascar and in continental Africa

scientific article published on 01 July 2019

Comparing phylogeographic hypotheses by simulating DNA sequences under a spatially explicit model of coalescence.

scientific article published on 26 September 2014

Conservation genetics of European bees: new insights from the continental scale

article

Cross-border spread, lineage displacement and evolutionary rate estimation of rabies virus in Yunnan Province, China

scientific article

Delimiting Species-Poor Data Sets using Single Molecular Markers: A Study of Barcode Gaps, Haplowebs and GMYC.

scientific article published on 19 January 2015

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa

scientific article published on 06 December 2019

Distribution and predictors of wing shape and size variability in three sister species of solitary bees.

scientific article

Divergent geographic patterns of genetic diversity among wild bees: Conservation implications

scientific article published in 2018

Ecological niche modelling and coalescent simulations to explore the recent geographical range history of five widespread bumblebee species in Europe

article

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

scientific article published on 06 November 2020

Evolution and epidemic spread of SARS-CoV-2 in Brazil

scientific article published on 23 July 2020

Evolution and epidemic spread of SARS-CoV-2 in Brazil

preprint article published on 12 June 2020

Explaining the geographic spread of emerging epidemics: a framework for comparing viral phylogenies and environmental landscape data

scientific article

Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020

scientific article published in 2021

GCALIGNER 1.0: An alignment program to compute a multiple sample comparison data matrix from large eco‐chemical datasets obtained by GC ⬇️

scientific article published on August 23, 2013

Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018

scientific article published on 07 August 2020

Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018

scientific article published on 22 May 2019

Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region

scientific article published on 01 February 2020

Genomic and epidemiological monitoring of yellow fever virus transmission potential

scientific article published in Science

Genomic and epidemiological monitoring of yellow fever virus transmission potential

article

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

scientific article published on 20 July 2023

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity

scientific article published on 29 September 2021

Geographical and Historical Patterns in the Emergences of Novel Highly Pathogenic Avian Influenza (HPAI) H5 and H7 Viruses in Poultry.

scientific article

HIV Rebound Is Predominantly Fueled by Genetically Identical Viral Expansions from Diverse Reservoirs

scientific article published on 27 August 2019

Host Genetic Variation Does Not Determine Spatio-Temporal Patterns of European Bat 1 Lyssavirus

scientific article published on 20 November 2017

Host relatedness and landscape connectivity shape pathogen spread in the puma, a large secretive carnivore

scientific article published on 04 January 2021

Hunting alters viral transmission and evolution in a large carnivore

scientific article published on 27 January 2022

Identifying the patterns and drivers of enzootic dynamics using reservoir sampling

scientific article published on 01 January 2019

Impact of past climatic changes and resource availability on the population demography of three food-specialist bees

scientific article

Inferring the mode of colonization of the rapid range expansion of a solitary bee from multilocus DNA sequence variation.

scientific article published on 16 December 2013

Inferring the past and present connectivity across the range of a North American leaf beetle: combining ecological niche modeling and a geographically explicit model of coalescence

scientific article published on 22 May 2014

Landscape genetic analyses of Cervus elaphus and Sus scrofa: comparative study and analytical developments

scientific article published on 01 February 2019

Mass migration to Europe: an opportunity for elimination of hepatitis B virus?

scientific article published on 01 April 2019

Methods for species delimitation in bumblebees (Hymenoptera, Apidae,Bombus): towards an integrative approach

article

Molecular and chemical characters to evaluate species status of two cuckoo bumblebees: Bombus barbutellus and Bombus maxillosus (Hymenoptera, Apidae, Bombini)

article

Molecular archaeoparasitology identifies cultural changes in the Medieval Hanseatic trading centre of Lübeck

scientific article published on 03 October 2018

Molecular phylogeny, biogeography, and host plant shifts in the bee genus Melitta (Hymenoptera: Anthophila).

scientific article

On the Use of Phylogeographic Inference to Infer the Dispersal History of Rabies Virus: A Review Study

scientific article published in 2021

On the importance of negative controls in viral landscape phylogeography

scientific article published on 01 July 2018

Patterns of genetic and reproductive traits differentiation in Mainland vs. Corsican populations of bumblebees

scientific article

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

scientific article

Phylogeography of Lassa Virus in Nigeria

scientific article published on 15 October 2019

Projected decline in European bumblebee populations in the twenty-first century

scientific article published on 13 September 2023

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases ⬇️

scientific article

Recent advances in computational phylodynamics

scientific article published on 01 August 2018

SERAPHIM: studying environmental rasters and phylogenetically informed movements

scientific article published on 22 June 2016

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

scientific article published on 07 May 2020

Scent of a break-up: phylogeography and reproductive trait divergences in the red-tailed bumblebee (Bombus lapidarius)

scientific article

Spatially explicit phylogeographical reconstruction sheds light on the history of the forest cover in the Congo Basin

scientific article published in 2022

Spatio-temporal analysis of Nova virus, a divergent hantavirus circulating in the European mole in Belgium

scientific article published on 19 October 2016

Symptom evolution following the emergence of maize streak virus

scientific article published on 15 January 2020

The evolution of ant worker polymorphism correlates with multiple social traits

scientific article published in 2021

The hitchhiker's guide to single-locus species delimitation

scientific article published on 05 July 2018

Transmission dynamics of re-emerging rabies in domestic dogs of rural China

article

Untangling introductions and persistence in COVID-19 resurgence in Europe

scholarly article by Philippe Lemey published in 2021

Using phylogeographic approaches to analyse the dispersal history, velocity and direction of viral lineages - Application to rabies virus spread in Iran

scientific article published on 18 September 2019

Using viral gene sequences to compare and explain the heterogeneous spatial dynamics of virus epidemics

scientific article

Virus genomes reveal factors that spread and sustained the Ebola epidemic

scientific article (publication date: 12 April 2017)

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic

article published in 2016

nosoi: A stochastic agent-based transmission chain simulation framework in r

scientific article published on 21 June 2020

spads 1.0: a toolbox to perform spatial analyses on DNA sequence data sets

scientific article

List of works by Simon Dellicour

A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages

An integrative taxonomic approach to assess the status of Corsican bumblebees: implications for conservation

Comparative phylogeography of five bumblebees: impact of range fragmentation, range size and diet specialization

Comparing patterns and scales of plant virus phylogeography: Rice yellow mottle virus in Madagascar and in continental Africa

Comparing phylogeographic hypotheses by simulating DNA sequences under a spatially explicit model of coalescence.

Conservation genetics of European bees: new insights from the continental scale

Cross-border spread, lineage displacement and evolutionary rate estimation of rabies virus in Yunnan Province, China

Delimiting Species-Poor Data Sets using Single Molecular Markers: A Study of Barcode Gaps, Haplowebs and GMYC.

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa

Distribution and predictors of wing shape and size variability in three sister species of solitary bees.

Divergent geographic patterns of genetic diversity among wild bees: Conservation implications

Ecological niche modelling and coalescent simulations to explore the recent geographical range history of five widespread bumblebee species in Europe

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

Evolution and epidemic spread of SARS-CoV-2 in Brazil

Evolution and epidemic spread of SARS-CoV-2 in Brazil

Explaining the geographic spread of emerging epidemics: a framework for comparing viral phylogenies and environmental landscape data

Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020

GCALIGNER 1.0: An alignment program to compute a multiple sample comparison data matrix from large eco‐chemical datasets obtained by GC ⬇️

Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018

Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018

Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region

Genomic and epidemiological monitoring of yellow fever virus transmission potential

Genomic and epidemiological monitoring of yellow fever virus transmission potential

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity

Geographical and Historical Patterns in the Emergences of Novel Highly Pathogenic Avian Influenza (HPAI) H5 and H7 Viruses in Poultry.

HIV Rebound Is Predominantly Fueled by Genetically Identical Viral Expansions from Diverse Reservoirs

Host Genetic Variation Does Not Determine Spatio-Temporal Patterns of European Bat 1 Lyssavirus

Host relatedness and landscape connectivity shape pathogen spread in the puma, a large secretive carnivore

Hunting alters viral transmission and evolution in a large carnivore

Identifying the patterns and drivers of enzootic dynamics using reservoir sampling

Impact of past climatic changes and resource availability on the population demography of three food-specialist bees

Inferring the mode of colonization of the rapid range expansion of a solitary bee from multilocus DNA sequence variation.

Inferring the past and present connectivity across the range of a North American leaf beetle: combining ecological niche modeling and a geographically explicit model of coalescence

Landscape genetic analyses of Cervus elaphus and Sus scrofa: comparative study and analytical developments

Mass migration to Europe: an opportunity for elimination of hepatitis B virus?

Methods for species delimitation in bumblebees (Hymenoptera, Apidae,Bombus): towards an integrative approach

Molecular and chemical characters to evaluate species status of two cuckoo bumblebees: Bombus barbutellus and Bombus maxillosus (Hymenoptera, Apidae, Bombini)

Molecular archaeoparasitology identifies cultural changes in the Medieval Hanseatic trading centre of Lübeck

Molecular phylogeny, biogeography, and host plant shifts in the bee genus Melitta (Hymenoptera: Anthophila).

On the Use of Phylogeographic Inference to Infer the Dispersal History of Rabies Virus: A Review Study

On the importance of negative controls in viral landscape phylogeography

Patterns of genetic and reproductive traits differentiation in Mainland vs. Corsican populations of bumblebees

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

Phylogeography of Lassa Virus in Nigeria

Projected decline in European bumblebee populations in the twenty-first century

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases ⬇️

Recent advances in computational phylodynamics

SERAPHIM: studying environmental rasters and phylogenetically informed movements

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Scent of a break-up: phylogeography and reproductive trait divergences in the red-tailed bumblebee (Bombus lapidarius)

Spatially explicit phylogeographical reconstruction sheds light on the history of the forest cover in the Congo Basin

Spatio-temporal analysis of Nova virus, a divergent hantavirus circulating in the European mole in Belgium

Symptom evolution following the emergence of maize streak virus

The evolution of ant worker polymorphism correlates with multiple social traits

The hitchhiker's guide to single-locus species delimitation

Transmission dynamics of re-emerging rabies in domestic dogs of rural China

Untangling introductions and persistence in COVID-19 resurgence in Europe

Using phylogeographic approaches to analyse the dispersal history, velocity and direction of viral lineages - Application to rabies virus spread in Iran

Using viral gene sequences to compare and explain the heterogeneous spatial dynamics of virus epidemics

Virus genomes reveal factors that spread and sustained the Ebola epidemic

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic

nosoi: A stochastic agent-based transmission chain simulation framework in r

spads 1.0: a toolbox to perform spatial analyses on DNA sequence data sets