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List of works by Matthew Cotten

139 HIV-2 Capsids Distinguishing High and Low Virus Load Patients in a West African Community Cohort

article

2'-O-methyl, 2'-O-ethyl oligoribonucleotides and phosphorothioate oligodeoxyribonucleotides as inhibitors of the in vitro U7 snRNP-dependent mRNA processing event

scientific article

A Novel Astrovirus-Like RNA Virus Detected in Human Stool

scientific article published on January 2016

A novel genus in the order Picornavirales detected in human stool

scientific article published on 8 September 2015

A rapid, quantitative and inexpensive method for detecting apoptosis by flow cytometry in transiently transfected cells ⬇️

scientific article published on December 1, 1997

Activation of heat-shock response by an adenovirus is essential for virus replication.

scientific article published on September 2000

Adenovirus enhancement of transferrin-polylysine-mediated gene delivery ⬇️

scientific article published on October 1, 1991

Amphibian oocytes and sphere organelles: are the U snRNA genes amplified?

scientific article published in August 1992

An efficient proteomics method to identify the cellular targets of protein kinase inhibitors.

scientific article

An international collaboration to standardize HIV-2 viral load assays: results from the 2009 ACHI(E)V(2E) quality control study

scientific article

Application of a novel, rapid, and sensitive oligonucleotide ligation assay for detection of cancer-predicting mutations in the precore and basal core promoter of hepatitis B virus

scientific article published on 28 May 2008

Assessing the utility of minority variant composition in elucidating RSV transmission pathways

article

Autologous antibody capture to enrich immunogenic viruses for viral discovery

scientific article

Characterization of Posa and Posa-like virus genomes in fecal samples from humans, pigs, rats, and bats collected from a single location in Vietnam

scientific article published on July 2017

Characterization of the fluorodihydrouracil substituent in 5-fluorouracil-containing Escherichia coli transfer RNA.

scientific article published on October 1983

Chemical proteomic analysis reveals alternative modes of action for pyrido[2,3-d]pyrimidine kinase inhibitors.

scientific article

Community case clusters of Middle East respiratory syndrome coronavirus in Hafr Al-Batin, Kingdom of Saudi Arabia: a descriptive genomic study

scientific article published on 31 March 2014

Complete Genome Characterization of Eight Human Parainfluenza Viruses from the Netherlands

scientific article published on 11 April 2019

Complete Genome Characterization of Two Wild-Type Measles Viruses from Vietnamese Infants during the 2014 Outbreak

scientific article published on 14 April 2016

Complete Genome Sequences of Six Measles Virus Strains.

scientific article

Comprehensive analysis of HIV Gag-specific IFN-gamma response in HIV-1- and HIV-2-infected asymptomatic patients from a clinical cohort in The Gambia

scientific article published in December 2008

Correction. The presence of prolines in the flanking region of an immunodominant HIV-2 gag epitope influences the quality and quantity of the epitope generated.

scientific article

Coupling of adenovirus to transferrin-polylysine/DNA complexes greatly enhances receptor-mediated gene delivery and expression of transfected genes

scientific article published on July 1992

Declining trend of serological syphilis among genitourinary medicine patients in the Gambia, West Africa

scientific article published in December 2009

Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting

scientific article published on 23 July 2014

Defining CAR as a cellular receptor for the avian adenovirus CELO using a genetic analysis of the two viral fibre proteins.

scientific article published in June 2001

Direct in vivo gene transfer to airway epithelium employing adenovirus-polylysine-DNA complexes.

scientific article published in February 1993

Direct relationship between virus load and systemic immune activation in HIV-2 infection

scientific article

Discovery of a polyomavirus in European badgers (Meles meles) and the evolution of host range in the family Polyomaviridae

scientific article

Efficient gene delivery into human dendritic cells by adenovirus polyethylenimine and mannose polyethylenimine transfection.

scientific article published in March 1999

Elicitation of a systemic and protective anti-melanoma immune response by an IL-2-based vaccine. Assessment of critical cellular and molecular parameters

article

Emergence of HBV resistance to lamivudine (3TC) in HIV/HBV co-infected patients in The Gambia, West Africa

scientific article

Entamoeba and Giardia parasites implicated as hosts of CRESS viruses

scientific article published on 15 September 2020

Epstein-Barr virus but not cytomegalovirus is associated with reduced vaccine antibody responses in Gambian infants

scientific article

Evaluating the performance of tools used to call minority variants from whole genome short-read data

Evolution of increased positive charge on the SARS-CoV-2 spike protein may be adaptation to human transmission

scientific article published in 2023

Exploiting features of adenovirus replication to support mammalian kinase production

scientific article

Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm

scientific article

Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus

scientific article published on May 2013

Generation of high-titer retroviral vectors following receptor-mediated, adenovirus-augmented transfection.

scientific article published on March 1995

Genome Sequences of a Novel Vietnamese Bat Bunyavirus

scientific article published on 22 December 2016

Genome diversity of Epstein-Barr virus from multiple tumor types and normal infection

scientific article published on 18 March 2015

Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant

scientific article published on 11 July 2019

HIV-1 subtype distribution in the Gambia and the significant presence of CRF49_cpx, a novel circulating recombinant form

scientific article

HIV-2 capsids distinguish high and low virus load patients in a West African community cohort

scientific article published in May 2010

HIV-2: the forgotten AIDS virus

scientific article published on 27 October 2008

HLA-associated polymorphisms in the HIV-2 capsid highlight key differences between HIV-1 and HIV-2 immune adaptation

scientific article published on 23 January 2018

HTLV-1 and HIV-2 infection are associated with increased mortality in a rural West African community

scientific article

HTLV-1 in rural Guinea-Bissau: prevalence, incidence and a continued association with HIV between 1990 and 2007.

scientific article

High-efficiency receptor-mediated delivery of small and large (48 kilobase gene constructs using the endosome-disruption activity of defective or chemically inactivated adenovirus particles.

scientific article published on July 1992

High-level expression of various apolipoprotein(a) isoforms by "transferrinfection": the role of kringle IV sequences in the extracellular association with low-density lipoprotein.

scientific article published on October 1994

Highly avid, oligoclonal, early-differentiated antigen-specific CD8+ T cells in chronic HIV-2 infection

article

Histone deacetylase 1 inactivation by an adenovirus early gene product.

scientific article

Hospital outbreak of Middle East respiratory syndrome coronavirus

scientific article

Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya

scientific article published in May 2018

Human Rhinovirus B and C Genomes from Rural Coastal Kenya

scientific article published on 28 July 2016

Human infection with MERS coronavirus after exposure to infected camels, Saudi Arabia, 2013.

scientific article

Hybrid proteins between Pseudomonas aeruginosa exotoxin A and poliovirus 2Apro cleave p220 in HeLa cells.

scientific article published in May 1996

Hyperacetylated histones facilitate chromatin assembly in vitro

scientific article

Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains

Identification and characterization of amphiphysin II as a novel cellular interaction partner of the hepatitis C virus NS5A protein

scientific article

Identification of SRPK1 and SRPK2 as the major cellular protein kinases phosphorylating hepatitis B virus core protein

scientific article

Identification of a novel human rhinovirus C type by antibody capture VIDISCA-454.

scientific article

In vivo production of human factor VII in mice after intrasplenic implantation of primary fibroblasts transfected by receptor-mediated, adenovirus-augmented gene delivery

scientific article

Induction of short interspersed nuclear repeat-containing transcripts in epithelial cells upon infection with a chicken adenovirus.

scientific article published in May 2003

Infectious diseases epidemic threats and mass gatherings: refocusing global attention on the continuing spread of the Middle East Respiratory syndrome coronavirus (MERS-CoV)

scientific article

Influenza virus hemagglutinin HA-2 N-terminal fusogenic peptides augment gene transfer by transferrin-polylysine-DNA complexes: toward a synthetic virus-like gene-transfer vehicle ⬇️

scientific article published on September 1, 1992

Isolation and characterization of two 5-fluorouracil-substituted Escherichia coli initiator methionine transfer ribonucleic acids

scientific article published on 01 March 1983

Lipopolysaccharide is a frequent contaminant of plasmid DNA preparations and can be toxic to primary human cells in the presence of adenovirus

scientific article published on July 1, 1994

Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing

scientific article published on 21 January 2015

Mammalian sprouty-1 and -2 are membrane-anchored phosphoprotein inhibitors of growth factor signaling in endothelial cells

scientific journal article

Mannose receptor-mediated gene delivery into antigen presenting dendritic cells.

scientific article

Massive phosphorylation distinguishes Xenopus laevis nucleoplasmin isolated from oocytes or unfertilized eggs

scientific article published on 01 September 1986

Maternal proviral load and vertical transmission of Human T cell Lymphotropic Virus type 1 in Guinea-Bissau.

scientific article

Maternal proviral load and vertical transmission of human T cell lymphotropic virus type 1 in Guinea-Bissau

scientific article published on 9 March 2012

Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters

scientific article published on 17 October 2019

Microtubule-independent motility and nuclear targeting of adenoviruses with fluorescently labeled genomes

scientific article

Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013

scientific article

Molecular epidemiology of endemic Human T-Lymphotropic virus 1 (HTLV-1) in a community in rural Guinea-Bissau.

scientific article published on 6 June 2011

Molecular epidemiology of endemic human T-lymphotropic virus type 1 in a rural community in Guinea-Bissau.

scientific article

Mutational analysis of the avian adenovirus CELO, which provides a basis for gene delivery vectors.

scientific article published on February 1999

NF- B activation can mediate inhibition of human cytomegalovirus replication

scientific article published on 01 February 2005

Next-generation sequencing and norovirus

scientific article published on 11 November 2016

Non-viral approaches to gene therapy.

scientific article published on December 1993

Novobiocin inhibits passive chromatin assembly in vitro.

scientific article published in December 1986

Novobiocin precipitates histones at concentrations normally used to inhibit eukaryotic type II topoisomerase

scientific article

Permeabilization of Mammalian Cells to Proteins: Poliovirus 2Aproas a Probe to Analyze Entry of Proteins into Cells

scientific article published on 01 April 1997

Polyethylenimine (PEI) is a simple, inexpensive and effective reagent for condensing and linking plasmid DNA to adenovirus for gene delivery ⬇️

scientific article published on August 1, 1997

Population dynamics of HIV-2 in rural West Africa: comparison with HIV-1 and ongoing transmission at the heart of the epidemic

scientific article

Potent autologous and heterologous neutralizing antibody responses occur in HIV-2 infection across a broad range of infection outcomes

scientific article published on 9 November 2011

Preparation of adenovirus-polylysine-DNA complexes

scientific article

Proteomic characterization of the angiogenesis inhibitor SU6668 reveals multiple impacts on cellular kinase signaling.

scientific article published in August 2005

Purification of a novel, nucleoplasmin-like protein from somatic nuclei.

scientific article

RICK activates a NF-kappaB-dependent anti-human cytomegalovirus response.

scientific article published on 10 December 2003

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases ⬇️

scientific article

Receptor-mediated endocytosis of transferrin-polycation conjugates: an efficient way to introduce DNA into hematopoietic cells

scientific article

Receptor-mediated gene transfer into human T lymphocytes via binding of DNA/CD3 antibody particles to the CD3 T cell receptor complex.

scientific article published in June 1995

Respiratory tract samples, viral load, and genome fraction yield in patients with Middle East respiratory syndrome

scientific article published on 15 May 2014

Resurgence of Ebola Virus Disease in Guinea Linked to a Survivor With Virus Persistence in Seminal Fluid for More Than 500 Days

scientific article

Ribozyme mediated destruction of RNA in vivo

scientific article published on December 1989

Ribozyme, antisense RNA, and antisense DNA inhibition of U7 small nuclear ribonucleoprotein-mediated histone pre-mRNA processing in vitro

scientific article

Robust Gag-specific T cell responses characterize viremia control in HIV-2 infection

scientific article published in October 2007

Seroprevalence of hepatitis B and C virus in HIV-1 and HIV-2 infected Gambians

scientific article

Setting a baseline for global urban virome surveillance in sewage

scientific article published on 13 August 2020

Severe acute respiratory infection caused by swine influenza virus in a child necessitating extracorporeal membrane oxygenation (ECMO), the Netherlands, October 2016.

scientific article

Somatic gene therapy for cancer: the utility of transferrinfection in generating 'tumor vaccines'.

scientific article

Specific contacts between mammalian U7 snRNA and histone precursor RNA are indispensable for the in vitro 3' RNA processing reaction

scientific article

Spike protein cleavage-activation mediated by the SARS-CoV-2 P681R mutation: a case-study from its first appearance in variant of interest (VOI) A.23.1 identified in Uganda

scientific article

Spread, circulation, and evolution of the Middle East respiratory syndrome coronavirus

scientific article published on 18 February 2014

TIS7 interacts with the mammalian SIN3 histone deacetylase complex in epithelial cells.

scientific article

Taking forward a ‘ONE HEALTH’ approach for turning the tide against The Middle East Respiratory Syndrome Coronavirus and other zoonotic pathogens with epidemic potential

scientific article published in June 2016

The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences

scientific article published on 26 April 2019

The Utility of Data Transformation for Alignment, de novo Assembly and Classification of Short Read Virus Sequences

article published in 2019

The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases

scientific article

The adenovirus protease is required for virus entry into host cells

scientific article published on November 1995

The complete DNA sequence and genomic organization of the avian adenovirus CELO.

scientific article published on May 1996

The in vivo application of ribozymes

scientific article

The presence of prolines in the flanking region of an immunodominant HIV-2 gag epitope influences the quality and quantity of the epitope generated.

scientific article published on 28 May 2015

Transferrin-polycation conjugates as carriers for DNA uptake into cells

scientific article

Transferrin-polycation-mediated introduction of DNA into human leukemic cells: stimulation by agents that affect the survival of transfected DNA or modulate transferrin receptor levels

scientific article

Transient Transfection of Mammary Epithelial Cells with a PEI/DNA/Adenovirus System

scientific article published on 01 February 1999

Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study

scientific article published on 20 September 2013

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis

scientific article

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection

scientific article published on July 2016

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection

Unexplained diarrhoea in HIV-1 infected individuals

scientific article published on 13 January 2014

Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes

scientific article

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

scientific article

Virological response to highly active antiretroviral therapy in patients infected with human immunodeficiency virus type 2 (HIV-2) and in patients dually infected with HIV-1 and HIV-2 in the Gambia and emergence of drug-resistant variants.

scientific article published on 06 May 2009

Virus discovery reveals frequent infection by diverse novel members of the Flaviviridae in wild lemurs

Virus genomes reveal factors that spread and sustained the Ebola epidemic

scientific article (publication date: 12 April 2017)

Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains

article

Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

scientific article published on 02 January 2020

Xenopus nucleoplasmin: egg vs. oocyte

scientific article published on 01 May 1986

Zika virus outbreak and the case for building effective and sustainable rapid diagnostics laboratory capacity globally

scientific article

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