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List of works by Gabriele Ausiello

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures

scientific article published on 8 May 2007

A Proteome-wide Domain-centric Perspective on Protein Phosphorylation

scientific article

A neural strategy for the inference of SH3 domain-peptide interaction specificity

scientific article

A novel approach to represent and compare RNA secondary structures

scientific article published on 21 April 2014

Alternative splicing tends to avoid partial removals of protein-protein interaction sites

scientific article

B-Pred, a structure based B-cell epitopes prediction server

scientific article

BEAM web server: A tool for structural RNA motif discovery

scientific article published on 31 October 2017

DBATE: database of alternative transcripts expression

scientific article published on 9 July 2013

Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information

scientific article

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

scientific article

False occurrences of functional motifs in protein sequences highlight evolutionary constraints

scientific article published in March 2007

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

scientific article (publication date: 26 March 2008)

Functional annotation by identification of local surface similarities: a novel tool for structural genomics

scientific article

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

scientific article

Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity

scientific article

Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites

scientific article published on 8 March 2007

Modular architecture of nucleotide-binding pockets.

scientific article

Nucleos: a web server for the identification of nucleotide-binding sites in protein structures

scientific article

PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae

scientific article

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures

scientific article

Phosphate binding sites identification in protein structures

scientific article

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites

scientific article

Query3d: a new method for high-throughput analysis of functional residues in protein structures

scientific article published in December 2005

SH3-Hunter: discovery of SH3 domain interaction sites in proteins

scientific article

SURFACE: a database of protein surface regions for functional annotation

scientific article published on January 2004

Structural motifs recurring in different folds recognize the same ligand fragments

scientific article

Superpose3D: a local structural comparison program that allows for user-defined structure representations

scientific article

pdbFun: mass selection and fast comparison of annotated PDB residues

scientific article

webPDBinder: a server for the identification of ligand binding sites on protein structures

scientific article (publication date: July 2013)

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