List of works - Gabriele Ausiello

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures

scientific article

A Proteome-wide Domain-centric Perspective on Protein Phosphorylation

scientific article

A neural strategy for the inference of SH3 domain-peptide interaction specificity

scientific article

A novel approach to represent and compare RNA secondary structures

scientific article published on 21 April 2014

Alternative splicing tends to avoid partial removals of protein-protein interaction sites

scientific article

B-Pred, a structure based B-cell epitopes prediction server

scientific article

BEAM web server: A tool for structural RNA motif discovery

scientific article published on 31 October 2017

DBATE: database of alternative transcripts expression

scientific article published on 9 July 2013

Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information

scientific article

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

scientific article

False occurrences of functional motifs in protein sequences highlight evolutionary constraints

scientific article

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

scientific article (publication date: 26 March 2008)

Functional annotation by identification of local surface similarities: a novel tool for structural genomics

scientific article

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

scientific article

Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity

scientific article

Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites

scientific article

Modular architecture of nucleotide-binding pockets.

scientific article

Nucleos: a web server for the identification of nucleotide-binding sites in protein structures

scientific article

PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae

scientific article

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures

scientific article

Phosphate binding sites identification in protein structures

scientific article

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites

scientific article

Query3d: a new method for high-throughput analysis of functional residues in protein structures

scientific article

SH3-Hunter: discovery of SH3 domain interaction sites in proteins

scientific article

SURFACE: a database of protein surface regions for functional annotation

scientific article published on January 2004

Structural motifs recurring in different folds recognize the same ligand fragments

scientific article

Superpose3D: a local structural comparison program that allows for user-defined structure representations

scientific article

pdbFun: mass selection and fast comparison of annotated PDB residues

scientific article

webPDBinder: a server for the identification of ligand binding sites on protein structures

scientific article (publication date: July 2013)

List of works by Gabriele Ausiello

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures

A Proteome-wide Domain-centric Perspective on Protein Phosphorylation

A neural strategy for the inference of SH3 domain-peptide interaction specificity

A novel approach to represent and compare RNA secondary structures

Alternative splicing tends to avoid partial removals of protein-protein interaction sites

B-Pred, a structure based B-cell epitopes prediction server

BEAM web server: A tool for structural RNA motif discovery

DBATE: database of alternative transcripts expression

Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

False occurrences of functional motifs in protein sequences highlight evolutionary constraints

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

Functional annotation by identification of local surface similarities: a novel tool for structural genomics

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity

Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites

Modular architecture of nucleotide-binding pockets.

Nucleos: a web server for the identification of nucleotide-binding sites in protein structures

PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures

Phosphate binding sites identification in protein structures

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites

Query3d: a new method for high-throughput analysis of functional residues in protein structures

SH3-Hunter: discovery of SH3 domain interaction sites in proteins

SURFACE: a database of protein surface regions for functional annotation

Structural motifs recurring in different folds recognize the same ligand fragments

Superpose3D: a local structural comparison program that allows for user-defined structure representations

pdbFun: mass selection and fast comparison of annotated PDB residues

webPDBinder: a server for the identification of ligand binding sites on protein structures