List of works - Andriy Kryshtafovych

A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.

scientific article

A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins

scientific article

A tribute to Anna Tramontano (1957-2017).

scientific article published on 25 October 2017

Assessment of CASP11 contact-assisted predictions.

scientific article

Assessment of model accuracy estimations in CASP12.

scientific article published on 17 August 2017

Assessment of predictions in the model quality assessment category.

scientific article

Assessment of protein assembly prediction in CASP12.

scientific article published on 26 October 2017

Assessment of protein disorder region predictions in CASP10

scientific article (publication date: February 2014)

Assessment of the assessment: evaluation of the model quality estimates in CASP10

scientific article (publication date: February 2014)

CASP 11 target classification.

scientific article

CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL.

scientific article

CASP10 results compared to those of previous CASP experiments

scientific article

CASP11 statistics and the prediction center evaluation system

scientific article

CASP6 data processing and automatic evaluation at the protein structure prediction center.

scientific article

CASP8 results in context of previous experiments

scientific article

CASP9 results compared to those of previous CASP experiments

scientific article published on 14 October 2011

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

scientific article

Critical assessment of methods of protein structure prediction (CASP)--round IX

scientific article (publication date: 2011)

Critical assessment of methods of protein structure prediction (CASP)--round x

scientific article (publication date: February 2014)

Critical assessment of methods of protein structure prediction (CASP)-Round XII.

scientific article published on 30 October 2017

Critical assessment of methods of protein structure prediction - Round VIII.

scientific article published in January 2009

Critical assessment of methods of protein structure prediction-Round VII

scientific article

Definition and classification of evaluation units for CASP10

scientific article

Distribution of evaluation scores for the models submitted to the second cryo-EM model challenge

article by Andriy Kryshtafovych et al published October 2018 in Data in Brief

Evaluation of CASP8 model quality predictions.

scientific article

Evaluation of disorder predictions in CASP9

scientific article (publication date: 2011)

Evaluation of free modeling targets in CASP11 and ROLL.

scientific article

Evaluation of model quality predictions in CASP9

scientific article (publication date: 2011)

Evaluation of residue-residue contact prediction in CASP10

scientific article (publication date: February 2014)

Evaluation of residue-residue contact predictions in CASP9

scientific article (publication date: 2011)

Evaluation of template-based models in CASP8 with standard measures

scientific article (publication date: 2009)

Evaluation of the template-based modeling in CASP12.

scientific article

Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures

scientific article

Interaction model based on local protein substructures generalizes to the entire structural enzyme-ligand space.

scientific article

Local descriptors of protein structure: a systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions

scientific article

New encouraging developments in contact prediction: Assessment of the CASP11 results

scientific article published on 16 October 2015

New tools and expanded data analysis capabilities at the Protein Structure Prediction Center

scientific article

Outcome of a workshop on applications of protein models in biomedical research

scientific article (publication date: 13 February 2009)

Progress from CASP6 to CASP7.

scientific article

Progress over the first decade of CASP experiments.

scientific article

Protein structure prediction and model quality assessment

scientific article

Protein structure prediction center in CASP8.

scientific article

Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

scientific article published on 4 January 2018

Some of the most interesting CASP11 targets through the eyes of their authors

scientific article

Using local gene expression similarities to discover regulatory binding site modules

scientific article

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts

scientific article

List of works by Andriy Kryshtafovych

A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.

A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins

A tribute to Anna Tramontano (1957-2017).

Assessment of CASP11 contact-assisted predictions.

Assessment of model accuracy estimations in CASP12.

Assessment of predictions in the model quality assessment category.

Assessment of protein assembly prediction in CASP12.

Assessment of protein disorder region predictions in CASP10

Assessment of the assessment: evaluation of the model quality estimates in CASP10

CASP 11 target classification.

CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL.

CASP10 results compared to those of previous CASP experiments

CASP11 statistics and the prediction center evaluation system

CASP6 data processing and automatic evaluation at the protein structure prediction center.

CASP8 results in context of previous experiments

CASP9 results compared to those of previous CASP experiments

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

Critical assessment of methods of protein structure prediction (CASP)--round IX

Critical assessment of methods of protein structure prediction (CASP)--round x

Critical assessment of methods of protein structure prediction (CASP)-Round XII.

Critical assessment of methods of protein structure prediction - Round VIII.

Critical assessment of methods of protein structure prediction-Round VII

Definition and classification of evaluation units for CASP10

Distribution of evaluation scores for the models submitted to the second cryo-EM model challenge

Evaluation of CASP8 model quality predictions.

Evaluation of disorder predictions in CASP9

Evaluation of free modeling targets in CASP11 and ROLL.

Evaluation of model quality predictions in CASP9

Evaluation of residue-residue contact prediction in CASP10

Evaluation of residue-residue contact predictions in CASP9

Evaluation of template-based models in CASP8 with standard measures

Evaluation of the template-based modeling in CASP12.

Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures

Interaction model based on local protein substructures generalizes to the entire structural enzyme-ligand space.

Local descriptors of protein structure: a systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions

New encouraging developments in contact prediction: Assessment of the CASP11 results

New tools and expanded data analysis capabilities at the Protein Structure Prediction Center

Outcome of a workshop on applications of protein models in biomedical research

Progress from CASP6 to CASP7.

Progress over the first decade of CASP experiments.

Protein structure prediction and model quality assessment

Protein structure prediction center in CASP8.

Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

Some of the most interesting CASP11 targets through the eyes of their authors

Using local gene expression similarities to discover regulatory binding site modules

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts