List of works by Paolo Marcatili

A database of immunoglobulins with integrated tools: DIGIT

scientific article

A novel approach to probe host-pathogen interactions of bovine digital dermatitis, a model of a complex polymicrobial infection

scientific article

AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides

scientific article published on 08 December 2020

Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes

scientific article published on 26 February 2019

Antibody informatics for drug discovery

scientific article published on 8 August 2014

Antibody modeling using the prediction of immunoglobulin structure (PIGS) web server [corrected].

scientific article

ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

scientific article

Automated shape-based clustering of 3D immunoglobulin protein structures in chronic lymphocytic leukemia

scientific article published on 20 November 2018

Benchmark datasets of immune receptor-epitope structural complexes

scientific article published on 10 October 2019

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

scientific article published on 2 May 2017

Biofunctionality of Enzymatically Derived Peptides from Codfish (<i>Gadus morhua</i>) Frame: Bulk In Vitro Properties, Quantitative Proteomics, and Bioinformatic Prediction

scientific article published on 27 November 2020

Data mining patented antibody sequences

publication published on 01 January 2021

Effects of natural selection and gene conversion on the evolution of human glycophorins coding for MNS blood polymorphisms in malaria-endemic African populations

scientific article

Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database

scientific article published on 20 November 2018

Erratum: antibody modeling using the Prediction of ImmunoGlobulin Structure (PIGS) web server

scientific article

Exploiting homology information in nontemplate based prediction of protein structures.

scientific article

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

scientific article (publication date: 26 March 2008)

Human MHC-II with Shared Epitope Motifs Are Optimal Epstein-Barr Virus Glycoprotein 42 Ligands-Relation to Rheumatoid Arthritis.

scientific article published on 21 January 2018

IEDB-AR: immune epitope database-analysis resource in 2019

scientific article published on 01 July 2019

Identification of emulsifier potato peptides by bioinformatics: application to omega-3 delivery emulsions and release from potato industry side streams

scientific article published on 20 January 2020

Identification of new autoantigens by protein array indicates a role for IL4 neutralization in autoimmune hepatitis

scientific article

Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoring

scientific article

Igs expressed by chronic lymphocytic leukemia B cells show limited binding-site structure variability.

scientific article published in May 2013

Immunoglobulin G structure and rheumatoid factor epitopes

scientific article published on 14 June 2019

Improved methods for predicting peptide binding affinity to MHC class II molecules

scientific article published on 6 January 2018

Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies

scientific article (publication date: October 2014)

LYRA, a webserver for lymphocyte receptor structural modeling

scientific article published on 24 May 2015

MAISTAS: a tool for automatic structural evaluation of alternative splicing products

scientific article (publication date: 15 June 2011)

Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity

scientific article

Modeled Structure of the Cell Envelope Proteinase of <i>Lactococcus lactis</i>

scientific article published on 22 December 2020

Mutation pattern of paired immunoglobulin heavy and light variable domains in chronic lymphocytic leukemia B cells

scientific article (publication date: 2011)

NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

article published in 2017

NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

scientific article published on 4 October 2017

NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning

scientific article published on 09 March 2019

On the mechanism of chloroquine resistance in Plasmodium falciparum

scientific article

PICMI: mapping point mutations on genomes

scientific article (publication date: 15 November 2010)

PIGS: automatic prediction of antibody structures

scientific article

Positive diversifying selection is a pervasive adaptive force throughout the Drosophila radiation.

scientific article

Prediction of Antibody Epitopes

scientific article published on 01 January 2015

Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server

scientific article (publication date: 15 September 2013)

Selection and Modelling of a New Single-Domain Intrabody Against TDP-43

scientific article published on 01 January 2021

Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma

scientific article (publication date: October 2010)

Structural Characterization of Peptide Antibodies

scientific article published in January 2015

Structural repertoire of immunoglobulin λ light chains

scientific article published in March 2011

T Cell Epitope Prediction and Its Application to Immunotherapy

publication published on 15 September 2021

T cell receptor fingerprinting enables in-depth characterization of the interactions governing recognition of peptide-MHC complexes

scientific article published on 19 November 2018

T cell receptor sequence clustering and antigen specificity

scientific article published on 05 August 2020

T-Cell Receptor Cognate Target Prediction Based on Paired α and β Chain Sequence and Structural CDR Loop Similarities

scientific article published on 28 August 2019

TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes

scientific article published on 10 October 2019

Tabhu: tools for antibody humanization

scientific article (publication date: February 2015)

Terminal deoxynucleotidyl transferase-mediated formation of protein binding polynucleotides

scientific article published on 04 January 2021

The ABCD database: a repository for chemically defined antibodies

scientific article published on 01 January 2020

The MoVIN server for the analysis of protein interaction networks

scientific article (publication date: 26 March 2008)

The association of heavy and light chain variable domains in antibodies: implications for antigen specificity

scientific article (publication date: August 2011)

The structure, viscoelasticity and charge of potato peptides adsorbed at the oil-water interface determine the physicochemical stability of fish oil-in-water emulsions

scientific article published in June 2021

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