List of works - Casper Kaae Sønderby

An introduction to Deep learning on biological sequence data - Examples and solutions

scientific article published on 23 August 2017

Apparent exchange rate imaging in anisotropic systems

scientific article

Auxiliary Deep Generative Models ⬇️

scientific article (publication date: 16 June 2016)

Binning microbial genomes using deep learning

scholarly article published 10 December 2018

BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis

scientific article published on 26 October 2015

Commentary on “Microanisotropy imaging: quantification of microscopic diffusion anisotropy and orientation of order parameter by diffusion MRI with magic-angle spinning of the q-vector”

Convolutional LSTM Networks for Subcellular Localization of Proteins ⬇️

scientific article (publication date: 2015)

Deep Recurrent Conditional Random Field Network for Protein Secondary Prediction

scholarly article by Alexander Rosenberg Johansen et al published 2017 in Proceedings of the 8th ACM International Conference on Bioinformatics

DeepLoc: prediction of protein subcellular localization using deep learning

scientific article published on 7 July 2017

DeepLoc: prediction of protein subcellular localization using deep learning

scientific article

Diffusion weighted imaging with circularly polarized oscillating gradients

scientific article published on 17 March 2014

Ladder Variational Autoencoders ⬇️

scientific article published on 27 May 2016

NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning

scientific article published on 09 March 2019

Neural Machine Translation with Characters and Hierarchical Encoding ⬇️

scientific article (publication date: 20 October 2016)

Orientationally invariant metrics of apparent compartment eccentricity from double pulsed field gradient diffusion experiments

scientific article published on 23 August 2013

SignalP 5.0 improves signal peptide predictions using deep neural networks

scientific article published on 18 February 2019

Tumor suppressor ASXL1 is essential for the activation of INK4B expression in response to oncogene activity and anti-proliferative signals

scientific article

scVAE: Variational auto-encoders for single-cell gene expression data

scientific article published on 16 May 2020

List of works by Casper Kaae Sønderby

An introduction to Deep learning on biological sequence data - Examples and solutions

Apparent exchange rate imaging in anisotropic systems

Auxiliary Deep Generative Models ⬇️

Binning microbial genomes using deep learning

BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis

Commentary on “Microanisotropy imaging: quantification of microscopic diffusion anisotropy and orientation of order parameter by diffusion MRI with magic-angle spinning of the q-vector”

Convolutional LSTM Networks for Subcellular Localization of Proteins ⬇️

Deep Recurrent Conditional Random Field Network for Protein Secondary Prediction

DeepLoc: prediction of protein subcellular localization using deep learning

DeepLoc: prediction of protein subcellular localization using deep learning

Diffusion weighted imaging with circularly polarized oscillating gradients

Ladder Variational Autoencoders ⬇️

NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning

Neural Machine Translation with Characters and Hierarchical Encoding ⬇️

Orientationally invariant metrics of apparent compartment eccentricity from double pulsed field gradient diffusion experiments

SignalP 5.0 improves signal peptide predictions using deep neural networks

Tumor suppressor ASXL1 is essential for the activation of INK4B expression in response to oncogene activity and anti-proliferative signals

scVAE: Variational auto-encoders for single-cell gene expression data