List of works - Domenico Cozzetto

A large-scale evaluation of computational protein function prediction

scientific article

Advances and pitfalls in protein structure prediction.

scientific article

An analysis of the Sargasso Sea resource and the consequences for database composition

scientific article (publication date: 19 April 2006)

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

Assessment of predictions in the model quality assessment category.

scientific article

Cancer-associated hypersialylated MUC1 drives the differentiation of human monocytes into macrophages with a pathogenic phenotype

scientific article published on 04 November 2020

Computational Methods for Annotation Transfers from Sequence.

scientific article

Computer-assisted protein domain boundary prediction using the DomPred server

scientific article published on April 2007

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

scientific article

Evaluation of CASP8 model quality predictions.

scientific article

Evaluation of predictions in the CASP10 model refinement category.

scientific article

Evaluation of template-based models in CASP8 with standard measures

scientific article (publication date: 2009)

FFPred 2.0: improved homology-independent prediction of gene ontology terms for eukaryotic protein sequences.

scientific article

FFPred 3: feature-based function prediction for all Gene Ontology domains

scientific article

Genome3D: exploiting structure to help users understand their sequences

scientific article

Interleukin-22 orchestrates a pathological endoplasmic reticulum stress response transcriptional programme in colonic epithelial cells

scientific article published on 02 December 2019

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

scientific article

Predicting human protein function with multi-task deep neural networks.

scientific article

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

scientific article

Relationship between multiple sequence alignments and quality of protein comparative models.

scientific article

TGF-β1 potentiates Vγ9Vδ2 T cell adoptive immunotherapy of cancer

scientific article published on 21 December 2021

Ten years of predictions ... and counting

scientific article

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

scientific article published on 19 November 2019

The PMDB Protein Model Database

scientific article

The assessment of methods for protein structure prediction.

scientific article

The contribution of intrinsic disorder prediction to the elucidation of protein function

scientific article published on March 2013

The evaluation of protein structure prediction results.

scientific article

Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks

scientific article published on 23 July 2019

List of works by Domenico Cozzetto

A large-scale evaluation of computational protein function prediction

Advances and pitfalls in protein structure prediction.

An analysis of the Sargasso Sea resource and the consequences for database composition

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

Assessment of predictions in the model quality assessment category.

Cancer-associated hypersialylated MUC1 drives the differentiation of human monocytes into macrophages with a pathogenic phenotype

Computational Methods for Annotation Transfers from Sequence.

Computer-assisted protein domain boundary prediction using the DomPred server

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

Evaluation of CASP8 model quality predictions.

Evaluation of predictions in the CASP10 model refinement category.

Evaluation of template-based models in CASP8 with standard measures

FFPred 2.0: improved homology-independent prediction of gene ontology terms for eukaryotic protein sequences.

FFPred 3: feature-based function prediction for all Gene Ontology domains

Genome3D: exploiting structure to help users understand their sequences

Interleukin-22 orchestrates a pathological endoplasmic reticulum stress response transcriptional programme in colonic epithelial cells

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

Predicting human protein function with multi-task deep neural networks.

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

Relationship between multiple sequence alignments and quality of protein comparative models.

TGF-β1 potentiates Vγ9Vδ2 T cell adoptive immunotherapy of cancer

Ten years of predictions ... and counting

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

The PMDB Protein Model Database

The assessment of methods for protein structure prediction.

The contribution of intrinsic disorder prediction to the elucidation of protein function

The evaluation of protein structure prediction results.

Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks