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List of works by Arlindo L. Oliveira

A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series

scientific article

An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance

scientific article

An efficient algorithm for the identification of structured motifs in DNA promoter sequences

scientific article published in April 2006

BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data

scientific article published on 7 July 2009

Biclustering algorithms for biological data analysis: a survey

scientific article

CcrB typing tool: an online resource for staphylococci ccrB sequence typing

scientific article published on 27 January 2008

Constant time clash detection in protein folding.

scientific article

Efficient alignment of pyrosequencing reads for re-sequencing applications

scientific article

GRISOTTO: A greedy approach to improve combinatorial algorithms for motif discovery with prior knowledge.

scientific article published on 22 April 2011

Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm

scientific article

MUSA: a parameter free algorithm for the identification of biologically significant motifs.

scientific article published on 26 October 2006

Mining Large Query Induced Graphs towards a Hierarchical Query Folksonomy

Mining query log graphs towards a query folksonomy

Modeling the Geospatial Evolution of COVID-19 using Spatio-temporal Convolutional Sequence-to-sequence Neural Networks

scientific article published on 26 July 2022

Quantitative Modeling the Saccharomyces cerevisiae FLR1 Regulatory Network Using an S-System Formalism

Quantitative modeling of the Saccharomyces cerevisiae FLR1 regulatory network using an S-system formalism

scientific article published in October 2011

Refining current knowledge on the yeast FLR1 regulatory network by combined experimental and computational approaches

scientific article published on 11 October 2010

Sparse network-based regularization for the analysis of patientomics high-dimensional survival data

article

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses

scientific article

The ELIXIR channel in F1000Research

scientific article

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae

scientific article

The bio.tools registry of software tools and data resources for the life sciences

article

USING GRAMMATICAL INFERENCE TECHNIQUES TO LEARN ONTOLOGIES THAT DESCRIBE THE STRUCTURE OF DOMAIN INSTANCES

article by André L. Martins et al published 6 February 2008 in Applied Artificial Intelligence

Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients

scientific article published on 01 March 2018

Using information interaction to discover epistatic effects in complex diseases

scientific article

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae

scientific article

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

scientific article published on 23 October 2010