List of works - Erica Sodergren

A catalog of reference genomes from the human microbiome

scientific article

A high-resolution map of human evolutionary constraint using 29 mammals

scientific article

A physical map of the human genome

scientific article

A second generation human haplotype map of over 3.1 million SNPs

scientific article

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

scientific article published in June 2007

Astrovirus MLB2 viremia in febrile child

scientific article published in November 2011

Bacterial communities of the coronal sulcus and distal urethra of adolescent males

scientific article

Biogeography of the ecosystems of the healthy human body

scientific article

Bos taurus genome assembly

scientific article

Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection

scientific article

Characterization of the bacterial and fungal microbiome in indoor dust and outdoor air samples: a pilot study

scientific article

Community characteristics of the gut microbiomes of competitive cyclists

scientific article published on 10 August 2017

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

scientific article

Comparison of the respiratory microbiome in healthy nonsmokers and smokers

scientific article published on May 2013

Complete Genome Sequence of Rickettsia typhi and Comparison with Sequences of Other Rickettsiae

scientific article

Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes

scientific article

Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays

scientific article

Discriminatory Indices of Typing Methods for Epidemiologic Analysis of Contemporary Staphylococcus aureus Strains

scientific article

Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project

scientific article published on April 2004

Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis

scientific article

Effect of Advanced HIV Infection on the Respiratory Microbiome

scientific article published on 02 February 2016

Enteric defensins are essential regulators of intestinal microbial ecology

scientific article published on 22 October 2009

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

scientific article

Exploration of bacterial community classes in major human habitats

scientific article (publication date: 7 May 2014)

Expression capable library for studies of Neisseria gonorrhoeae, version 1.0.

scientific article

Genetic basis for in vivo daptomycin resistance in enterococci

scientific article

Genome Sequences of 15 Gardnerella vaginalis Strains Isolated from the Vaginas of Women with and without Bacterial Vaginosis

scientific article published on 29 September 2016

Genome analysis of Treponema pallidum subsp. pallidum and subsp. pertenue strains: most of the genetic differences are localized in six regions

scientific article

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

scientific article

Genome sequencing reveals widespread virulence gene exchange among human Neisseria species

scientific article

Genome-wide detection and characterization of positive selection in human populations

scientific article

Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study

scientific article published on 8 March 2016

Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition

scientific article

Household air pollution and the lung microbiome of healthy adults in Malawi: a cross-sectional study

scientific article published on 11 August 2016

Hypothesis testing and power calculations for taxonomic-based human microbiome data

scientific article

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

scientific article published on 30 June 2015

Increased prevalence of anellovirus in pediatric patients with fever

scientific article

Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition

scientific article

Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001

Longitudinal analysis of the premature infant intestinal microbiome prior to necrotizing enterocolitis: a case-control study

scientific article

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

scientific article published on 30 June 2015

Metagenomic analysis of double-stranded DNA viruses in healthy adults

scientific article

Microbial glutamate metabolism predicts intravenous cocaine self-administration in Diversity Outbred mice

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

scientific article published on 6 August 2015

Novel bacterial taxa in the human microbiome

scientific article

Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities

scientific article

Pan-genome and comparative genome analyses of propionibacterium acnes reveal its genomic diversity in the healthy and diseased human skin microbiome

scientific article published on 30 April 2013

Patterned progression of bacterial populations in the premature infant gut.

scientific article

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

scientific article

Phenotypic and genotypic analysis of Clostridium difficile isolates: a single-center study

scientific article

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

scientific article

Precise dissection of an Escherichia coli O157:H7 outbreak by single nucleotide polymorphism analysis

scientific article

Propionibacterium acnes strain populations in the human skin microbiome associated with acne

scientific article

Quantitation and composition of cutaneous microbiota in diabetic and nondiabetic men.

scientific article published on 8 January 2013

Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology

scientific article published on 15 August 2017

Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters

scientific article

Sequence analysis of the human virome in febrile and afebrile children

scientific article

Shedding genomic light on Aristotle's lantern

scientific article

Statistical object data analysis of taxonomic trees from human microbiome data

scientific article

The "most wanted" taxa from the human microbiome for whole genome sequencing

scientific article

The DNA sequence of the human X chromosome

scientific article published on 17 March 2005

The DNA sequence, annotation and analysis of human chromosome 3

scientific article (publication date: 27 April 2006)

The finished DNA sequence of human chromosome 12

scientific article

The genome of the model beetle and pest Tribolium castaneum

scientific article

The genome of the sea urchin Strongylocentrotus purpuratus

scientific article

The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny

scientific article

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Whole genome sequence of the Treponema Fribourg-Blanc: unspecified simian isolate is highly similar to the yaws subspecies

scientific article

Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence

scientific article

Widespread colonization of the lung by Tropheryma whipplei in HIV infection

scientific article published on May 2013

List of works by Erica Sodergren

A catalog of reference genomes from the human microbiome

A high-resolution map of human evolutionary constraint using 29 mammals

A physical map of the human genome

A second generation human haplotype map of over 3.1 million SNPs

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

Astrovirus MLB2 viremia in febrile child

Bacterial communities of the coronal sulcus and distal urethra of adolescent males

Biogeography of the ecosystems of the healthy human body

Bos taurus genome assembly

Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection

Characterization of the bacterial and fungal microbiome in indoor dust and outdoor air samples: a pilot study

Community characteristics of the gut microbiomes of competitive cyclists

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

Comparison of the respiratory microbiome in healthy nonsmokers and smokers

Complete Genome Sequence of Rickettsia typhi and Comparison with Sequences of Other Rickettsiae

Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes

Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays

Discriminatory Indices of Typing Methods for Epidemiologic Analysis of Contemporary Staphylococcus aureus Strains

Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project

Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis

Effect of Advanced HIV Infection on the Respiratory Microbiome

Enteric defensins are essential regulators of intestinal microbial ecology

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

Exploration of bacterial community classes in major human habitats

Expression capable library for studies of Neisseria gonorrhoeae, version 1.0.

Genetic basis for in vivo daptomycin resistance in enterococci

Genome Sequences of 15 Gardnerella vaginalis Strains Isolated from the Vaginas of Women with and without Bacterial Vaginosis

Genome analysis of Treponema pallidum subsp. pallidum and subsp. pertenue strains: most of the genetic differences are localized in six regions

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Genome sequencing reveals widespread virulence gene exchange among human Neisseria species

Genome-wide detection and characterization of positive selection in human populations

Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study

Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition

Household air pollution and the lung microbiome of healthy adults in Malawi: a cross-sectional study

Hypothesis testing and power calculations for taxonomic-based human microbiome data

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

Increased prevalence of anellovirus in pediatric patients with fever

Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition

Initial sequencing and analysis of the human genome

Longitudinal analysis of the premature infant intestinal microbiome prior to necrotizing enterocolitis: a case-control study

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

Metagenomic analysis of double-stranded DNA viruses in healthy adults

Microbial glutamate metabolism predicts intravenous cocaine self-administration in Diversity Outbred mice

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

Novel bacterial taxa in the human microbiome

Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities

Pan-genome and comparative genome analyses of propionibacterium acnes reveal its genomic diversity in the healthy and diseased human skin microbiome

Patterned progression of bacterial populations in the premature infant gut.

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

Phenotypic and genotypic analysis of Clostridium difficile isolates: a single-center study

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

Precise dissection of an Escherichia coli O157:H7 outbreak by single nucleotide polymorphism analysis

Propionibacterium acnes strain populations in the human skin microbiome associated with acne

Quantitation and composition of cutaneous microbiota in diabetic and nondiabetic men.

Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology

Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters

Sequence analysis of the human virome in febrile and afebrile children

Shedding genomic light on Aristotle's lantern

Statistical object data analysis of taxonomic trees from human microbiome data

The "most wanted" taxa from the human microbiome for whole genome sequencing

The DNA sequence of the human X chromosome

The DNA sequence, annotation and analysis of human chromosome 3

The finished DNA sequence of human chromosome 12

The genome of the model beetle and pest Tribolium castaneum

The genome of the sea urchin Strongylocentrotus purpuratus

The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Whole genome sequence of the Treponema Fribourg-Blanc: unspecified simian isolate is highly similar to the yaws subspecies

Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence

Widespread colonization of the lung by Tropheryma whipplei in HIV infection