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List of works by Octávio S. Paulo

4Pipe4--A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information.

scientific article

A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing

scientific article

Age estimates of Frullania (Frullaniaceae, Porellales) main lineages: another example of rapid and recent diversification in liverwort evolution

article

Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts.

scientific article published on 15 November 2011

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article

Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

scientific article

Association of Mc1r variants with ecologically relevant phenotypes in the European ocellated lizard, Lacerta lepida ⬇️

scientific article published on August 4, 2011

Building a Robust, Densely-Sampled Spider Tree of Life for Ecosystem Research

scientific article published in 2020

Challenges and pitfalls in the characterization of anonymous outlier AFLP markers in non-model species: lessons from an ocellated lizard genome scan ⬇️

scientific article published on August 15, 2012

Comparative Validation of Conventional and RNA-Seq Data-Derived Reference Genes for qPCR Expression Studies of Colletotrichum kahawae

scientific article

Conflicting patterns of DNA barcoding and taxonomy in the cicada genus Tettigettalna from Southern Europe (Hemiptera: Cicadidae).

scientific article published on 6 September 2013

Conus pennaceus: a phylogenetic analysis of the Mozambican molluscan complex

scholarly article by C M Pereira et al published 27 December 2010 in African Journal of Marine Science

Deep analysis of wild Vitis flower transcriptome reveals unexplored genome regions associated with sex specification

scientific article published on 24 October 2016

Evolutionary and Biogeographic Insights on the Macaronesian Beta-Patellifolia Species (Amaranthaceae) from a Time-Scaled Molecular Phylogeny

scientific article

Expression profiling of genes involved in the biotrophic colonisation of Coffea arabica leaves by Hemileia vastatrix

article

Genetic Diversity and Physiological Performance of Portuguese Wild Beet (Beta vulgaris spp. maritima) from Three Contrasting Habitats.

scientific article

Genetic and Genomic Tools to Asssist Sugar Beet Improvement: The Value of the Crop Wild Relatives.

scientific article published on 6 February 2018

Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area

scientific article

Genome-Wide Signatures of Selection in Colletotrichum kahawae Reveal Candidate Genes Potentially Involved in Pathogenicity and Aggressiveness

scientific article published on 19 June 2019

Genomic Patterns of Positive Selection at the Origin of Rust Fungi

scientific article published on 3 December 2015

Genomic signatures of introgression between commercial and native bumblebees, , in western Iberian Peninsula-Implications for conservation and trade regulation ⬇️

scientific article published on 11 January 2019

Habitat filtering and inferred dispersal ability condition across‐scale species turnover and rarity in Macaronesian island spider assemblages

scientific article published in 2021

Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data

scientific article published on 04 March 2020

Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae

scientific article (publication date: 23 April 2012)

Management strategies for conservation of the lizard Lacerta schreiberi in Portugal

scientific article (publication date: August 1999)

Molecular candidates for early-stage flower-to-fruit transition in stenospermocarpic table grape (Vitis vinifera L.) inflorescences ascribed by differential transcriptome and metabolome profiles

scientific article

Molecular evidence of polyandry in the citrus mealybug, Planococcus citri (Hemiptera: Pseudococcidae).

scientific article published on 03 July 2013

Molecular phylogeny and DNA barcoding in the meadow-spittlebug Philaenus spumarius (Hemiptera, Cercopidae) and its related species

scientific article published on 20 March 2010

Morphology, songs and genetics identify two new cicada species from Morocco: Tettigettalna afroamissa sp. nov. and Berberigetta dimelodica gen. nov. & sp. nov. (Hemiptera: Cicadettini)

scientific article (publication date: March 2017)

Multiple approaches to detect outliers in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient ⬇️

scientific article published on November 22, 2010

NOTE: DISTRIBUTION AND CONSERVATION OF THE COMMON CHAMAELEO CHAMAELEON, IN ALGARVE, SOUTHERN PORTUGAL ⬇️

article

New data on polymorphism of the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) from the island of São Miguel (Azores)

scientific article

New insights on adaptation and population structure of cork oak using genotyping by sequencing

scientific article published on 18 November 2018

New mitochondrial and nuclear evidences support recent demographic expansion and an atypical phylogeographic pattern in the spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae)

scientific article

Novel insights on colonization routes and evolutionary potential of Colletotrichum kahawae, a severe pathogen of Coffea arabica

scientific article published on 17 October 2018

Numts help to reconstruct the demographic history of the ocellated lizard (Lacerta lepida) in a secondary contact zone

scientific article published on 4 January 2012

Oak root response to ectomycorrhizal symbiosis establishment: RNA-Seq derived transcript identification and expression profiling

scientific article

Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

scientific article published on 14 March 2014

Ovule Transcriptome Analysis Discloses Deregulation of Genes and Pathways in Sexual and Apomictic Limonium Species (Plumbaginaceae)

scientific article published in 2023

PCR-based detection of prey DNA in the gut contents of the tiger-fly, Coenosia attenuata (Diptera: Muscidae), a biological control agent in Mediterranean greenhouses

scientific article published on 28 October 2021

Phylogeny of the most species-rich freshwater bivalve family (Bivalvia: Unionida: Unionidae): Defining modern subfamilies and tribes

scientific article

Phylogeographical patterns inCoenosia attenuata(Diptera: Muscidae): a widespread predator of insect species associated with greenhouse crops

Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones

scientific article

Phylogeography and modes of reproduction in diploid and tetraploid halophytes of Limonium species (Plumbaginaceae): evidence for a pattern of geographical parthenogenesis.

scientific article published on 30 September 2015

Population genomic footprints of host adaptation, introgression and recombination in Coffee Leaf Rust

scientific article published on 12 January 2018

Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae) ⬇️

scholarly article published in 2021

Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L.

scientific article published in February 2016

Shortcomings of Phylogenetic Studies on Recent Radiated Insular Groups: A Meta-Analysis Using Cabo Verde Biodiversity

scientific article published on 06 June 2019

Structure_threader: an Improved Method for Automation Parallelization of Programs STRUCTURE, FASTSTRUCTURE and MavericK on Multi Core CPU systems

scientific article published on 04 August 2017

Systematic and phylogeographical assessment of the Acanthodactylus erythrurus group (Reptilia: Lacertidae) based on phylogenetic analyses of mitochondrial and nuclear DNA.

scientific article published on 6 December 2008

Testing drivers of acoustic divergence in cicadas (Cicadidae: <i>Tettigettalna</i>)

scientific article published in 2022

Tettigettalnajosei (Boulard, 1982) (Hemiptera: Cicadoidea): first record in Spain, with notes on the distribution, genetic variation and behaviour of the species

scientific article

The era of reference genomes in conservation genomics

scientific article published in March 2022

The persistence of Pliocene populations through the Pleistocene climatic cycles: evidence from the phylogeography of an Iberian lizard.

scientific article published in August 2001

The role of vicariance vs. dispersal in shaping genetic patterns in ocellated lizard species in the western Mediterranean

article

Using gradient Forest to predict climate response and adaptation in Cork oak

scientific article published in 2021

Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian Lizard

article

Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust

scientific article published on 18 July 2011

concatenator: sequence data matrices handling made easy.

scientific article

p53 gene discriminates two ecologically divergent sister species of pine voles

scientific article

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