List of works - Yanay Ofran

A novel Fer/FerT targeting compound selectively evokes metabolic stress and necrotic death in malignant cells

scientific article published on 16 October 2017

Analysing six types of protein-protein interfaces

scientific article (publication date: 10 January 2003)

Antibody specific epitope prediction-emergence of a new paradigm

scientific article published on 31 March 2015

Automated identification of complementarity determining regions (CDRs) reveals peculiar characteristics of CDRs and B cell epitopes

scientific article

Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery

scientific article

Computational identification of antigen-binding antibody fragments

scientific article

Create and assess protein networks through molecular characteristics of individual proteins

scientific article

De-novo protein function prediction using DNA binding and RNA binding proteins as a test case

scientific article

Epitome: database of structure-inferred antigenic epitopes

scientific article

Erratum.

scientific article

How far from the SNP may the causative genes be?

scientific article published on 6 June 2016

ISIS: interaction sites identified from sequence.

scientific article

Integrating genomic data from high-throughput studies with computational modeling reveals differences in the molecular basis of hyposalivation between type 1 and type 2 diabetes

scientific article

Large scale analysis of phenotype-pathway relationships based on GWAS results

scientific article (publication date: 2014)

Large-scale analysis of secondary structure changes in proteins suggests a role for disorder-to-order transitions in nucleotide binding proteins

scientific article published on February 2010

Large-scale analysis of somatic hypermutations in antibodies reveals which structural regions, positions and amino acids are modified to improve affinity

scientific article published on 26 November 2013

Lateral acquisition of genes is affected by the friendliness of their products

scientific article

Neighbor Overlap Is Enriched in the Yeast Interaction Network: Analysis and Implications ⬇️

scientific article published on June 26, 2012

New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.

scientific article

Non-local residue-residue contacts in proteins are more conserved than local ones

scientific article

Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure ⬇️

scientific article published on June 6, 2012

Post-streptococcal auto-antibodies inhibit protein disulfide isomerase and are associated with insulin resistance

scientific article

Potent Neutralization of Vaccinia Virus by Divergent Murine Antibodies Targeting a Common Site of Vulnerability in L1 Protein

scientific article

Prediction of DNA-binding residues from sequence

scientific article

Protein-protein interaction hotspots carved into sequences

scientific article

Structural consensus among antibodies defines the antigen binding site

scientific article

The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function

scientific article

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

scientific article

Understanding differences between synthetic and natural antibodies can help improve antibody engineering

scientific article published on 14 December 2015

Unveiling protein functions through the dynamics of the interaction network

scientific article

Using a combined computational-experimental approach to predict antibody-specific B cell epitopes

scientific article published on 13 March 2014

List of works by Yanay Ofran

A novel Fer/FerT targeting compound selectively evokes metabolic stress and necrotic death in malignant cells

Analysing six types of protein-protein interfaces

Antibody specific epitope prediction-emergence of a new paradigm

Automated identification of complementarity determining regions (CDRs) reveals peculiar characteristics of CDRs and B cell epitopes

Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery

Computational identification of antigen-binding antibody fragments

Create and assess protein networks through molecular characteristics of individual proteins

De-novo protein function prediction using DNA binding and RNA binding proteins as a test case

Epitome: database of structure-inferred antigenic epitopes

Erratum.

How far from the SNP may the causative genes be?

ISIS: interaction sites identified from sequence.

Integrating genomic data from high-throughput studies with computational modeling reveals differences in the molecular basis of hyposalivation between type 1 and type 2 diabetes

Large scale analysis of phenotype-pathway relationships based on GWAS results

Large-scale analysis of secondary structure changes in proteins suggests a role for disorder-to-order transitions in nucleotide binding proteins

Large-scale analysis of somatic hypermutations in antibodies reveals which structural regions, positions and amino acids are modified to improve affinity

Lateral acquisition of genes is affected by the friendliness of their products

Neighbor Overlap Is Enriched in the Yeast Interaction Network: Analysis and Implications ⬇️

New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.

Non-local residue-residue contacts in proteins are more conserved than local ones

Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure ⬇️

Post-streptococcal auto-antibodies inhibit protein disulfide isomerase and are associated with insulin resistance

Potent Neutralization of Vaccinia Virus by Divergent Murine Antibodies Targeting a Common Site of Vulnerability in L1 Protein

Prediction of DNA-binding residues from sequence

Protein-protein interaction hotspots carved into sequences

Structural consensus among antibodies defines the antigen binding site

The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

Understanding differences between synthetic and natural antibodies can help improve antibody engineering

Unveiling protein functions through the dynamics of the interaction network

Using a combined computational-experimental approach to predict antibody-specific B cell epitopes