List of works by Andreas Prlić

Adding some SPICE to DAS.

scientific article published on September 2005

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm

scientific article published on 22 April 2019

Assessment of the CASP4 fold recognition category

scientific article published on 01 January 2001

BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank.

scientific article

BioJava: an open-source framework for bioinformatics

scientific article

BioJava: an open-source framework for bioinformatics in 2012

scientific article

Circular permutation in proteins

scientific article published in 2012

DASMI: exchanging, annotating and assessing molecular interaction data

scientific article (publication date: 15 May 2009)

Detection of circular permutations within protein structures using CE-CP

scientific article published on 15 April 2015

Ensembl 2006.

scientific article

Ensembl 2007

scientific article

Ensembl 2008

scientific article

GA4GH: International policies and standards for data sharing across genomic research and healthcare

scientific article published on 10 November 2021

Impact of genetic variation on three dimensional structure and function of proteins

scientific article

Infrastructure for distributed protein annotation

Integrating biological data--the Distributed Annotation System

scientific article

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank

scientific article

Integrating sequence and structural biology with DAS

scientific article

Integration of open access literature into the RCSB Protein Data Bank using BioLit

scientific article

Investigation of protein quaternary structure via stoichiometry and symmetry ınformation.

scientific article published on 4 June 2018

MMTF - an efficient file format for the transmission, visualization, and analysis of macromolecular structures

article

MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures

scientific article

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework

scientific article published on 18 December 2017

NGL viewer: web-based molecular graphics for large complexes

scholarly article by Alexander S Rose published in May 2018

New tools and expanded data analysis capabilities at the Protein Structure Prediction Center

scientific article

Pre-calculated protein structure alignments at the RCSB PDB website

scientific article published in December 2010

Quality assurance for the query and distribution systems of the RCSB Protein Data Bank

scientific article

Quaternary structure evaluation tool for protein assemblies

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank

scientific article

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

article

Recon3D enables a three-dimensional view of gene variation in human metabolism.

scientific article published on 19 February 2018

SISYPHUS--structural alignments for proteins with non-trivial relationships

scientific article published in January 2007

SeqRepo: A system for managing local collections of biological sequences

scientific article published on 03 December 2020

Structure-derived substitution matrices for alignment of distantly related sequences

scientific article published on 01 August 2000

Sustained performance of knowledge-based potentials in fold recognition.

scientific article

Systematic detection of internal symmetry in proteins using CE-Symm

scientific article

Ten simple rules for the open development of scientific software

scientific article

The Distributed Annotation System for Integration of Biological Data

The PLOS Computational Biology Software Section

scientific article (publication date: 29 November 2012)

The Protein Data Bank: Overview and Tools for Drug Discovery

The Protein Feature Ontology: a tool for the unification of protein feature annotations

scientific article

The RCSB Protein Data Bank: new resources for research and education

scientific article (publication date: 2013)

The RCSB Protein Data Bank: redesigned web site and web services

scientific article

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

scientific article

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

scientific article

The evolution of the RCSB Protein Data Bank website

Towards an efficient compression of 3D coordinates of macromolecular structures

scientific article

Trendspotting in the Protein Data Bank

scientific article

WILMA-automated annotation of protein sequences.

scientific article published on January 2004

Web-based molecular graphics for large complexes

Will widgets and semantic tagging change computational biology? ⬇️

scientific article

hgvs: A Python package for manipulating sequence variants using HGVS nomenclature: 2018 Update

scientific article published on 05 September 2018

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