Search filters

List of works by Ana Conesa

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6

scientific article published on 27 February 2020

A multiway approach to data integration in systems biology based on Tucker3 and N-PLS

article

A network approach to elucidate and prioritize microbial dark matter in microbial communities

scientific article published on 22 September 2020

A survey of best practices for RNA-seq data analysis

scientific article

ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments

scientific article published on 14 November 2011

Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance.

scientific article published on 25 January 2007

B2G-FAR, a species-centered GO annotation repository

scientific article

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

scientific article published on 31 May 2008

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

scientific article

Blast2GO: A comprehensive suite for functional analysis in plant genomics ⬇️

scientific article

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

2005 scientific article

C-terminal propeptide of the Caldariomyces fumago chloroperoxidase: an intramolecular chaperone?

scholarly article by Ana Conesa published in August 2001

Calcium signaling in water stress-induced leaf abscission in citrus plants

article

Calnexin overexpression increases manganese peroxidase production in Aspergillus niger

scientific article published on February 2002

Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate 'bovine genotype'.

scientific article published on 14 August 2015

Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification

scientific article

Data integration in the era of omics: current and future challenges

scientific article

Defining the genomic signature of totipotency and pluripotency during early human development

scientific article

Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies

scientific article published in February 2005

Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal transcriptional responses to cadmium at low dose.

scientific article published in October 2006

Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray

scientific article

Differential expression in RNA-seq: a matter of depth

scientific article published on 8 September 2011

Direct functional assessment of the composite phenotype through multivariate projection strategies

scientific article published on 13 September 2008

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.

scientific article published on 22 May 2007

Early gene expression events in the laminar abscission zone of abscission-promoted citrus leaves after a cycle of water stress/rehydration: involvement of CitbHLH1.

scientific article

Erratum to: Making sense of big data in health research: towards an EU action plan

scientific article

Examining the role of glutamic acid 183 in chloroperoxidase catalysis

scientific article

Expression of the Caldariomyces fumago chloroperoxidase in Aspergillus niger and characterization of the recombinant enzyme

scientific article

Expression profiling shows differential molecular pathways and provides potential new diagnostic biomarkers for colorectal serrated adenocarcinoma

scientific article published on 28 June 2012

Filamentous fungi as cell factories for heterologous protein production

scientific article

Fortunella margarita transcriptional reprogramming triggered by Xanthomonas citri subsp. citri

scientific article

Functional assessment of time course microarray data

scientific article (publication date: 16 June 2009)

Fungal peroxidases: molecular aspects and applications

scientific article

GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson's disease

scientific article published on 28 February 2022

GEPAS, a web-based tool for microarray data analysis and interpretation

scientific article

Genome-wide changes in histone H3 lysine 27 trimethylation associated with bud dormancy release in peach

Harmonization of quality metrics and power calculation in multi-omic studies

scientific article published on 18 June 2020

High-throughput functional annotation and data mining with the Blast2GO suite

scientific article

Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner

scientific article

Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium

scientific article published on 01 March 2010

Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics

scientific article

Initial genomics of the human nucleolus

scientific article published in March 2010

Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes

scientific article published on 21 January 2021

Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology

scientific article

Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells

scientific article published on 21 September 2011

Making multi-omics data accessible to researchers

scientific article published on 31 October 2019

Making sense of big data in health research: Towards an EU action plan

scientific article

Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks

scientific article published on 4 February 2009

Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma

scientific article

Microarray analysis of Etrog citron (Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection

article

Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua

scientific article

Modeling human endometrial decidualization from the interaction between proteome and secretome

scientific article

Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients

scientific article published on 21 January 2021

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

scientific article

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

scientific article

Pathway network inference from gene expression data

scientific article

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing

scientific article

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

scientific article

Qualimap: evaluating next-generation sequencing alignment data.

scientific article

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior

scientific article published on 27 August 2015

Relationship between genome and epigenome--challenges and requirements for future research

scientific article published on 18 June 2014

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

scientific article

STATegra EMS: an Experiment Management System for complex next-generation omics experiments

scientific article

STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline

scientific article published on 04 March 2021

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia.

scientific article published on 13 February 2014

Serial Expression Analysis: a web tool for the analysis of serial gene expression data

scientific article

Single-cell RNAseq for the study of isoforms-how is that possible?

scientific article published on 10 August 2018

Spatial differentiation in the vegetative mycelium of Aspergillus niger

scientific article published on 19 October 2007

Studies on the production of fungal peroxidases in Aspergillus niger

scientific article

The common ground of genomics and systems biology

scientific article

Transcriptional Differences for COVID-19 Disease Map Genes between Males and Females Indicate a Different Basal Immunophenotype Relevant to the Disease

scientific article published on 01 December 2020

Transcriptional profiling of mRNA expression in the mouse distal colon

scientific article published on 03 September 2008

Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus

scientific article

Transcriptome analysis provides new insights into liver changes induced in the rat upon dietary administration of the food additives butylated hydroxytoluene, curcumin, propyl gallate and thiabendazole

scientific journal article

Transcriptome profiling of the intoxication response of Tenebrio molitor larvae to Bacillus thuringiensis Cry3Aa protoxin

scientific article

Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis

scientific article published on 30 October 2012

Two independent epigenetic biomarkers predict survival in neuroblastoma

scientific article

Undisclosed, unmet and neglected challenges in multi-omics studies

scientific article published in 2021

Variable selection for multifactorial genomic data

acorde unravels functionally interpretable networks of isoform co-usage from single cell data

scientific article published on 05 April 2022

maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments

scientific article published on 15 February 2006

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

scientific article published on 19 May 2016

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

scientific article published on 18 May 2020

Paulina is supported by:

About Paulina

Help