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List of works by E. Virginia Armbrust

A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series

scientific article published on 14 January 2022

A Kernel-Based Change Detection Method to Map Shifts in Phytoplankton Communities Measured by Flow Cytometry

A kernel‐based change detection method to map shifts in phytoplankton communities measured by flow cytometry

scientific article published in 2021

A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis

scientific article

A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances

scientific article published on 11 September 2020

Accelerate Synthesis in Ecology and Environmental Sciences

article

Acclimation conditions modify physiological response of the diatom Thalassiosira pseudonana to elevated CO2 concentrations in a nitrate-limited chemostat.

scientific article

Accumulation of NO2 -cobalamin in nutrient-stressed ammonia-oxidizing archaea and in the oxygen deficient zone of the eastern tropical North Pacific

scientific article published on 08 August 2018

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

scientific article

Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea

scientific article published on 07 July 2020

Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea

scientific article published on 09 May 2013

Anthropogenic Asian aerosols provide Fe to the North Pacific Ocean

scientific article published on 22 October 2020

Chitin in diatoms and its association with the cell wall

scientific article

Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage

scientific article published on 25 January 2007

Comparative Genomic Analysis of and Six Taxonomic Synonyms: A First Look at the Distribution and Diversity of the Expanded Species

scientific article published in 2018

Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability

scientific article published on 18 January 2012

Complex marine microbial communities partition metabolism of scarce resources over the diel cycle

scientific article

Confounding effects of oxygen and temperature on the TEX86 signature of marine Thaumarchaeota

scientific article

Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

scientific article

Correction for Heal et al., “Marine Community Metabolomes Carry Fingerprints of Phytoplankton Community Composition”

scientific article published in 2023

Coupled Effects of Light and Nitrogen Source on the Urea Cycle and Nitrogen Metabolism over a Diel Cycle in the Marine Diatom Thalassiosira pseudonana

scientific article published on 27 August 2011

Cryptic carbon and sulfur cycling between surface ocean plankton

scientific article (publication date: 13 January 2015)

Daily changes in phytoplankton lipidomes reveal mechanisms of energy storage in the open ocean

scientific article published in Nature Communications

Determination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry.

scientific article published in November 2014

Development of a molecular-based index for assessing iron status in bloom-forming pennate diatoms

scientific article

Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities

scientific article published in 2021

Digital expression profiling of novel diatom transcripts provides insight into their biological functions

scientific article

Diversity and Evolutionary History of Iron Metabolism Genes in Diatoms

scientific article

E. Virginia Armbrust. Interviewed by Laura L. Mays Hoopes

scientific article published on January 2010

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

scientific article published on 16 January 2017

Fe limitation decreases transcriptional regulation over the diel cycle in the model diatom Thalassiosira pseudonana

scientific article published on 11 September 2019

Ferritin is used for iron storage in bloom-forming marine pennate diatoms

scientific article

Flow Cytometry in Phytoplankton Research

article

Genetic structure of the mating-type locus of Chlamydomonas reinhardtii

scientific article

Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii (Bacillariophyta)

scientific article (publication date: 2 January 2010)

Genome-scale metabolic model of the diatom Thalassiosira pseudonana highlights the importance of nitrogen and sulfur metabolism in redox balance

scientific article

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana.

scientific article published on 17 April 2013

Genomes of Sea Microbes

scientific article published in 2007

Genomic insights into marine microalgae

scientific article published on January 2008

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

scientific article

IDENTIFICATION AND ASSESSMENT OF DOMOIC ACID PRODUCTION IN OCEANIC PSEUDO-NITZSCHIA (BACILLARIOPHYCEAE) FROM IRON-LIMITED WATERS IN THE NORTHEAST SUBARCTIC PACIFIC(1).

scientific article

IDENTIFICATION AND COMPARATIVE GENOMIC ANALYSIS OF SIGNALING AND REGULATORY COMPONENTS IN THE DIATOMTHALASSIOSIRA PSEUDONANA

article

INDUCTION OF PHOTORESPIRATION BY LIGHT IN THE CENTRIC DIATOMTHALASSIOSIRA WEISSFLOGII(BACILLARIOPHYCEAE): MOLECULAR CHARACTERIZATION AND PHYSIOLOGICAL CONSEQUENCES

article by Micaela Schnitzler Parker et al published June 2004 in Journal of Phycology

INTER- AND INTRASPECIFIC COMMUNITY STRUCTURE WITHIN THE DIATOM GENUS PSEUDO-NITZSCHIA (BACILLARIOPHYCEAE).

scientific article

INTER- AND INTRASPECIFIC RELATIONSHIPS BETWEEN NUCLEAR DNA CONTENT AND CELL SIZE IN SELECTED MEMBERS OF THE CENTRIC DIATOM GENUS THALASSIOSIRA (BACILLARIOPHYCEAE)(1).

scientific article published in April 2008

Identification of G protein-coupled receptor signaling pathway proteins in marine diatoms using comparative genomics

scientific article

Identification of a new gene family expressed during the onset of sexual reproduction in the centric diatom Thalassiosira weissflogii

scientific article

Influence of oxygen availability on the activities of ammonia-oxidizing archaea

scientific article published on 17 February 2017

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria.

scientific article

Interactions between diatoms and bacteria

scientific article

Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean

scientific article published on 01 September 2019

Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre

scientific article published on 15 June 2015

Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum brightwellii

scientific article

Marine Community Metabolomes Carry Fingerprints of Phytoplankton Community Composition

scientific article published in 2021

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation.

scientific article

Marine biology. Uncovering hidden worlds of ocean biodiversity

scientific article published on May 2015

Metapopulation Structure in the Planktonic Diatom Ditylum brightwellii (Bacillariophyceae).

scientific article published on 10 December 2008

Microbiology. Taking the pulse of ocean microbes

scientific article published on 01 July 2014

Molecular characterization of Pseudo-nitzschia community structure and species ecology in a hydrographically complex estuarine system (Puget Sound, Washington, USA).

scientific article

Nitrogen fixation in mesoscale eddies of the North Pacific Subtropical Gyre: Patterns and mechanisms

scientific article published in 2023

Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota.

scientific article

Ocean acidification conditions increase resilience of marine diatoms.

scientific article

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

scientific article

Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean.

scientific article

Phytoplankton calcification in a high-CO₂ world

scientific article

Pigments, size, and distributions of Synechococcus in the North Atlantic and Pacific Oceans

article

Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage

scientific article

Positive Selection within a Diatom Species Acts on Putative Protein Interactions and Transcriptional Regulation ⬇️

scientific article published on October 23, 2012

Probing the evolution, ecology and physiology of marine protists using transcriptomics

scientific article published on 21 November 2016

Rapid evolution of a sexual reproduction gene in centric diatoms of the genus Thalassiosira

scientific article

Recognition cascade and metabolite transfer in a marine bacteria-phytoplankton model system.

scientific article published on 19 June 2017

Relative impacts of light, temperature, and reactive oxygen on thaumarchaeal ammonia oxidation in the North Pacific Ocean

scientific article

SYNERGISTIC EFFECTS OF LIGHT, TEMPERATURE, AND NITROGEN SOURCE ON TRANSCRIPTION OF GENES FOR CARBON AND NITROGEN METABOLISM IN THE CENTRIC DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE)1

article

Scalable clustering algorithms for continuous environmental flow cytometry.

scientific article published on 17 October 2015

SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific

scientific article published on 22 November 2019

Sexual ancestors generated an obligate asexual and globally dispersed clone within the model diatom species Thalassiosira pseudonana.

scientific article published on 12 July 2018

Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations

scientific article published on 20 October 2017

Succession and diel transcriptional response of the glycolate-utilizing component of the bacterial community during a spring phytoplankton bloom

scientific article

Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean

scientific article published on 22 July 2019

The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

scientific article

The Importance of the Phytoplankton “Middle Class” to Ocean Net Community Production

scientific article published in 2020

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

scientific article

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

scientific article

The evolution of silicon transporters in diatoms

scientific article

The genetic potential for key biogeochemical processes in Arctic frost flowers and young sea ice revealed by metagenomic analysis

scientific article published on 16 April 2014

The life of diatoms in the world's oceans

scientific article published on May 2009

The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger.

scientific article published on 27 January 2015

Transcriptional responses of three model diatoms to nitrate limitation of growth

article

Two distinct pools of B12 analogs reveal community interdependencies in the ocean.

scientific article published on 27 December 2016

Ubiquitous marine bacterium inhibits diatom cell division.

scientific article

Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota ⬇️

scientific article published on February 3, 2012

Unveiling a phytoplankton hotspot at a narrow boundary between coastal and offshore waters.

scientific article

Update of the Diatom EST Database: a new tool for digital transcriptomics

scientific article

Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses

scholarly article

flowPhyto: enabling automated analysis of microscopic algae from continuous flow cytometric data.

scientific article

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree ⬇️

scientific article published on October 30, 2010

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