List of works by Byrappa Venkatesh

5 alpha-pregnane-3 beta, 7 alpha, 17,20 alpha- and -20 beta-tetrols as metabolites of progesterone and 17-hydroxyprogesterone in carp (Cyprinus carpio) ovarian incubations

scientific article

A chromosome-level genome assembly of the Asian arowana, Scleropages formosus

scientific article

A compact cartilaginous fish model genome

article

A genetic linkage map for the tiger pufferfish, Takifugu rubripes

scientific article (publication date: September 2005)

A loss-of-function NUAK2 mutation in humans causes anencephaly due to impaired Hippo-YAP signaling

scientific article published on 01 December 2020

A novel ICK mutation causes ciliary disruption and lethal endocrine-cerebro-osteodysplasia syndrome

scientific article published on 11 April 2016

A survey of ancient conserved non-coding elements in the PAX6 locus reveals a landscape of interdigitated cis-regulatory archipelagos

scientific article

A systematic survey of the intergenic region between the murine oxytocin- and vasopressin-encoding genes

scientific article published in September 1996

A trans-species missense SNP in Amhr2 is associated with sex determination in the tiger pufferfish, Takifugu rubripes (fugu).

scientific article

Adaptive evolution of tetrodotoxin resistance in animals

scientific article published on 7 September 2006

An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement

scientific article (publication date: April 2012)

Ancient Duplications and Expression Divergence in the Globin Gene Superfamily of Vertebrates: Insights from the Elephant Shark Genome and Transcriptome

scientific article

Ancient noncoding elements conserved in the human genome

scientific article

Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes

scientific article

Author Correction: Elephant shark genome provides unique insights into gnathostome evolution

scientific article published on 19 November 2020

Basal vertebrates clarify the evolutionary history of ciliopathy-associated genes Tmem138 and Tmem216

scientific article

Biochemical implications of sequence comparisons of the cystic fibrosis transmembrane conductance regulator

scientific article

Blood steroid levels in the goldfish: Measurement of six ovarian steroids in small volumes of serum by reverse-phase high-performance liquid chromatography and radioimmunoassay

scientific article published on 01 December 1989

Bone matrix hypermineralization associated with low bone turnover in a case of Nasu-Hakola disease

scientific article published on 11 October 2018

CDK10 Mutations in Humans and Mice Cause Severe Growth Retardation, Spine Malformations, and Developmental Delays

scientific article published in September 2017

Characterization of Gonadotropin-Releasing Hormone (GnRH) Genes From Cartilaginous Fish: Evolutionary Perspectives

article

Characterization of a hypoxia-response element in the Epo locus of the pufferfish, Takifugu rubripes

scientific article

Characterization of the Runx gene family in a jawless vertebrate, the Japanese lamprey (Lethenteron japonicum).

scientific article

Characterization of the neurohypophysial hormone gene loci in elephant shark and the Japanese lamprey: origin of the vertebrate neurohypophysial hormone genes

scientific article

Characterization of the platelet-derived growth factor receptor alpha and c-kit genes in the pufferfish Fugu rubripes

scientific article published in October 2002

Chromosome-level assembly of the horseshoe crab genome provides insights into its genome evolution

scientific article published on 08 May 2020

Chromosome-level genome assembly of the coastal horseshoe crab (Tachypleus gigas)

scientific article published on 29 July 2020

Cloning and expression of the reverse transcriptase component of pufferfish (Fugu rubripes) telomerase

scientific article published on July 2005

Compact intergenic regions of the pufferfish genome facilitate isolation of gene promoters: characterization of Fugu 3'-phosphoadenosine 5'-phosphosulfate synthase 2 (fPapss2) gene promoter function in transgenic Xenopus

scientific article

Comparative genomics of the Hlx homeobox gene and protein: conservation of structure and expression from fish to mammals.

scientific article published in June 2005

Comparative genomics of the human and Fugu voltage-gated calcium channel α1-subunit gene family reveals greater diversity in Fugu

article

Comparative genomics using fugu: a tool for the identification of conserved vertebrate cis-regulatory elements

scientific article

Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data

article published in the Proceedings of the National Academy of Sciences of the United States of America

Conservation as well as divergence in Mcidas function underlies the differentiation of multiciliated cells in vertebrates

scientific article published on 28 July 2020

Conservation of all three p53 family members and Mdm2 and Mdm4 in the cartilaginous fish

scientific article published on 15 December 2011

Conserved regulation of the lymphocyte-specific expression of lck in the Fugu and mammals

scientific article

Conserved synteny between the Fugu and human PTEN locus and the evolutionary conservation of vertebrate PTEN function

scientific article published in September 2001

Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

scientific article published in May 2016

Cyclostomes Lack Clustered Protocadherins.

scientific article published on 5 November 2015

Draft genome of the lined seahorse, Hippocampus erectus

scientific article published on 22 April 2017

Duplication, degeneration and subfunctionalization of the nested synapsin–Timp genes in Fugu

article

Early Evolution of Vertebrate Mybs: An Integrative Perspective Combining Synteny, Phylogenetic, and Gene Expression Analyses

scientific article

Early Maturity and Breeding of Two CatfishesHeteropneustes fossilis andClarias batrachus

Early vertebrate chromosome duplications and the evolution of the neuropeptide Y receptor gene regions

scientific article

Effects of neurohypophyseal and adenohypophyseal hormones, steroids, eicosanoids, and extrafollicular tissue on ovulation in vitro of guppy (Poecilia reticulata) embryos

scientific article published in July 1992

Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes

scientific article published on 03 September 2009

Elephant shark genome provides unique insights into gnathostome evolution

scientific article (publication date: 9 January 2014)

Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster

scholarly article

Emergence and evolution of the glycoprotein hormone and neurotrophin gene families in vertebrates

scientific article

Enforced expression of Simian virus 40 large T-antigen leads to testicular germ cell tumors in zebrafish

scientific article

Erratum: Corrigendum: Elephant shark genome provides unique insights into gnathostome evolution

scientific article published in Nature

Erythropoietin gene from a teleost fish, Fugu rubripes

scientific article published on 13 May 2004

Evidence for at least six Hox clusters in the Japanese lamprey (Lethenteron japonicum).

scientific article published on 16 September 2013

Evolution and diversity of fish genomes

scientific article published on December 2003

Evolution and functional characterisation of melanopsins in a deep-sea chimaera (elephant shark, Callorhinchus milii)

scientific article

Evolution of genetic networks underlying the emergence of thymopoiesis in vertebrates.

scientific article published on 25 June 2009

Evolution of the Cdk-activator Speedy/RINGO in vertebrates

scientific article

Evolution of the neuropeptide Y family: New genes by chromosome duplications in early vertebrates and in teleost fishes

article

Evolutionary functional elaboration of the Elovl2/5 gene family in chordates

scientific article published on 09 February 2016

Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective

scientific article

Evolving Hox activity profiles govern diversity in locomotor systems

scientific article

Expansions, diversification, and interindividual copy number variations of AID/APOBEC family cytidine deaminase genes in lampreys

scientific article published on 19 March 2018

Expression of Wnt signaling skeletal development genes in the cartilaginous fish, elephant shark (Callorhinchus milii).

scientific article

Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes

scientific article published on 14 June 2004

Fish-T1K (Transcriptomes of 1,000 Fishes) Project: large-scale transcriptome data for fish evolution studies

scientific article (publication date: 2016)

Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences

scientific article (publication date: 10 July 2002)

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

scientific article published on 10 March 2004

Fugu genome does not contain mitochondrial pseudogenes

scientific article published on 4 January 2006

Fugu rubripes and human survival motor neuron genes: structural and functional similarities in comparative genome studies

scientific article

Fugu: a compact vertebrate reference genome

scientific article

Functional conservation of a forebrain enhancer from the elephant shark (Callorhinchus milii ) in zebrafish and mice

scientific article

Genetic alterations in the tyrosine kinase transcriptome of human cancer cell lines

scientific article published on December 2007

Genetic basis of tetrodotoxin resistance in pufferfishes

scientific article

Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution

scientific article published on 17 February 2021

Genomic structure and sequence of the pufferfish (Fugu rubripes) gene encoding an actin-related protein

scientific article published in April 1998

Genomic structure and sequence of the pufferfish (Fugu rubripes) growth hormone-encoding gene: a comparative analysis of teleost growth hormone genes

scientific article published on March 1997

Growth and metabolism of the catfishClarias batrachus (Linn.) fed with different experimental diets

Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters

scholarly article

Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis

scientific article

Identification and analysis of additional copies of the platelet-derived growth factor receptor and colony stimulating factor 1 receptor genes in fugu

scientific article published in August 2002

Identification and comparative analysis of the protocadherin cluster in a reptile, the green anole lizard

scientific article

Identification of three somatostatin genes in lampreys

scientific article

Incidentalome from Genomic Sequencing: A Barrier to Personalized Medicine?

scientific article published on 4 February 2016

Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals

scientific article

Into the blue: gene duplication and loss underlie color vision adaptations in a deep-sea chimaera, the elephant shark Callorhinchus milii

scientific article (publication date: March 2009)

Investigation of Loss and Gain of Introns in the Compact Genomes of Pufferfishes (fugu and Tetraodon)

scientific article published in 2008

Investigation of loss and gain of introns in the compact genomes of pufferfishes (Fugu and Tetraodon).

scientific article

Isolation, characterization and evolution of nine pufferfish (Fugu rubripes) actin genes

scientific article published on June 1996

LXRα and LXRβ Nuclear Receptors Evolved in the Common Ancestor of Gnathostomes

scientific article published on 04 January 2017

Lampreys, the jawless vertebrates, contain only two ParaHox gene clusters

scientific article published on 7 August 2017

Large number of ultraconserved elements were already present in the jawed vertebrate ancestor

scientific article published on 3 December 2008

Late changes in spliceosomal introns define clades in vertebrate evolution

scientific article published on August 1999

Loss-of-Function Mutations in LGI4, a Secreted Ligand Involved in Schwann Cell Myelination, Are Responsible for Arthrogryposis Multiplex Congenita

scientific article published on 8 March 2017

Loss-of-function mutations in UDP-Glucose 6-Dehydrogenase cause recessive developmental epileptic encephalopathy

scientific article published on 30 January 2020

Mapping of three translocation breakpoints associated with orofacial clefting within 6p24 and identification of new transcripts within the region

scientific article

Molecular cloning and genomic structure of a gene encoding interferon regulatory factor in the pufferfish (Fugu rubripes).

scientific article published in March 2001

Molecular synapomorphies resolve evolutionary relationships of extant jawed vertebrates

scientific article (publication date: 25 September 2001)

Mouse transgenesis identifies conserved functional enhancers and cis-regulatory motif in the vertebrate LIM homeobox gene Lhx2 locus

scientific article

Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes

scientific article

Nanoconfined β-sheets mechanically reinforce the supra-biomolecular network of robust squid Sucker Ring Teeth

scientific article

Neurone-specific expression and regulation of the pufferfish isotocin and vasotocin genes in transgenic mice

scientific article

Neuropeptide Y-family peptides and receptors in the elephant shark, Callorhinchus milii confirm gene duplications before the gnathostome radiation

scientific article

Novel mutation in HTRA1 in a family with diffuse white matter lesions and inflammatory features

scientific article published on 08 July 2019

Novel mutations in the ciliopathy-associated gene CPLANE1 (C5orf42) cause OFD syndrome type VI rather than Joubert syndrome

article

Novel vertebrate genes and putative regulatory elements identified at kidney disease and NR2E1/fierce loci

scientific article

Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates

scientific article (publication date: 6 April 2004)

On the origin of SCPP genes

article

Optimization of the High-Performance Liquid Chromatographic Separation of Steroids by the Overlapping Resolution Mapping Procedure

Origin and diversity of the SOX transcription factor gene family: genome-wide analysis in Fugu rubripes

scientific article

Overripening of ovulated eggs in goldfish, Carassius auratus: II. Possible involvement of postovulatory follicles and steroids

article by M. J. Formacion et al published June 1995 in Fish Physiology and Biochemistry

Parathyroid hormone gene family in a cartilaginous fish, the elephant shark (Callorhinchus milii).

scientific article

Phylogenetic and evolutionary relationships and developmental expression patterns of the zebrafish twist gene family.

scientific article published on 30 June 2009

Priming of lineage-specifying genes by Bcl11b is required for lineage choice in post-selection thymocytes.

scientific article published on 26 September 2017

Progestins and cortisol delay while estradiol-17 beta induces early parturition in the guppy, Poecilia reticulata

scientific article published in August 1991

Prostaglandins and teleost neurohypophyseal hormones induce premature parturition in the guppy, Poecilia reticulata

scientific article published in July 1992

Publisher Correction: Reconstruction of proto-vertebrate, protocyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution

correction of a scholarly article

Pufferfish and zebrafish have five distinct NPY receptor subtypes, but have lost appetite receptors Y1 and Y5.

scientific article

Rapidly evolving fish genomes and teleost diversity

scientific article

Ray-fin fish tetraploidization gave rise to pufferfish duplicates of NPY and PYY, but zebrafish NPY duplicate was lost

scientific article

Recessive mutation in GALNT3 causes hyperphosphatemic familial tumoral calcinosis associated with chronic recurrent multifocal osteomyelitis

scientific article published on 01 January 2019

Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution

scientific article

Recurrent gene loss correlates with the evolution of stomach phenotypes in gnathostome history.

scientific article

Regulation of protocadherin gene expression by multiple neuron-restrictive silencer elements scattered in the gene cluster

scientific article

Retention of fatty acyl desaturase 1 (fads1) in Elopomorpha and Cyclostomata provides novel insights into the evolution of long-chain polyunsaturated fatty acid biosynthesis in vertebrates

scientific article published on 19 October 2018

Reversal of Phenotypic Abnormalities by CRISPR/Cas9-Mediated Gene Correction in Huntington Disease Patient-Derived Induced Pluripotent Stem Cells.

scientific article published on 21 February 2017

Runx family genes in a cartilaginous fish, the elephant shark (Callorhinchus milii).

scientific article

STAT4is a target of the hematopoietic zinc-finger transcription factor Ikaros in T cells

scholarly article by Wai-Ho Yap published in July 2005

Seipin differentially regulates lipogenesis and adipogenesis through a conserved core sequence and an evolutionarily acquired C-terminus

scientific article

Sequence and organization of coelacanth neurohypophysial hormone genes: evolutionary history of the vertebrate neurohypophysial hormone gene locus

scientific article

Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii)

scientific article (publication date: 2012)

Sequencing and comparative analysis of fugu protocadherin clusters reveal diversity of protocadherin genes among teleosts

scientific article

Sequencing of Pax6 loci from the elephant shark reveals a family of Pax6 genes in vertebrate genomes, forged by ancient duplications and divergences

scientific article

Small is beautiful: comparative genomics with the pufferfish (Fugu rubripes).

scientific article published on April 1996

Specific macrophage populations promote both cardiac scar deposition and subsequent resolution in adult zebrafish

scientific article published on 16 August 2019

Steroid hormone profile during gestation and parturition of the guppy (Poecilia reticulata)

scientific article published on 01 March 1990

Steroid metabolism by ovarian follicles and extrafollicular tissue of the guppy (Poecilia reticulata) during oocyte growth and gestation

scientific article published in June 1992

Steroid metabolism in teleost gonads: purification and identification of metabolites by high-performance liquid chromatography.

scientific article

Steroid production by ovarian follicles of the viviparous guppy (Poecilia reticulata) and its regulation by precursor substrates, dibutyryl cAMP and forskolin

scientific article published in March 1992

Studies on the growth rate of the grass carp Ctenopharyngodon idella (Valenciennes) fed on two aquatic weeds and a terrestrial grass

Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome

scientific article published in April 2007

Sydney Brenner—a personal perspective

biographical article published in 2019

TFCONES: a database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements

scientific article

Tetraodon genome analysis provides further evidence for whole-genome duplication in the ray-finned fish lineage

article

The 350-fold compacted Fugu parkin gene is structurally and functionally similar to human Parkin

scientific article

The African coelacanth genome provides insights into tetrapod evolution

scientific article

The Ancient Origins of Neural Substrates for Land Walking.

scientific article published in February 2018

The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts

scientific article

The Divergent Genomes of Teleosts

scientific article published in February 2018

The RIN family of Ras effectors.

scientific article

The fifth neurohypophysial hormone receptor is structurally related to the V2-type receptor but functionally similar to V1-type receptors

scientific article

The fishes of Genome 10K.

scientific article

The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate

scientific article

The genomic substrate for adaptive radiation in African cichlid fish

scientific article

The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths

scientific article

The p53-Mdm2 interaction and the E3 ligase activity of Mdm2/Mdm4 are conserved from lampreys to humans

scientific article

The regulation of retina specific expression of rhodopsin gene in vertebrates

scientific article published in August 2003

The seahorse genome and the evolution of its specialized morphology.

scientific article published on December 2016

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

scientific article

Tissue sampling methods and standards for vertebrate genomics

scientific article (publication date: 12 July 2012)

Transcriptional activation of elephant shark mineralocorticoid receptor by corticosteroids, progesterone, and spironolactone

scientific article published on 04 June 2019

Transgenic rats reveal functional conservation of regulatory controls between the Fugu isotocin and rat oxytocin genes

scientific article

Uneven evolutionary rates of bradykinin B1 and B2 receptors in vertebrate lineages

scientific article published on 10 March 2006

Variation in sequence and organization of splicing regulatory elements in vertebrate genes

scholarly article

Venkatesh et al. reply

scientific article published in July 2014

Voltage-gated sodium channel gene repertoire of lampreys: gene duplications, tissue-specific expression and discovery of a long-lost gene.

scientific article published in September 2017

Whole exome sequencing identifies recessive germline mutations in FAM160A1 in familial NK/T cell lymphoma

scientific article published on 12 November 2018

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

scientific article

cDNA cloning of Runx family genes from the pufferfish (Fugu rubripes)

article

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