List of works by Matthias Samwald

A brighter future for the implementation of pharmacogenomic testing

scientific article published on 31 August 2016

A curated, ontology-based, large-scale knowledge graph of artificial intelligence tasks and benchmarks ⬇️

scientific article published on 17 June 2022

A data-driven living review for pharmacogenomic decision support in cancer treatment.

scientific article

A journey to Semantic Web query federation in the life sciences

scientific article (publication date: October 2009)

Advancing translational research with the Semantic Web

scientific article (publication date: 9 May 2007)

An RDF/OWL knowledge base for query answering and decision support in clinical pharmacogenetics

scientific article published on January 2013

An ontology-based, mobile-optimized system for pharmacogenomic decision support at the point-of-care

scientific article (publication date: 2014)

An open-source, mobile-friendly search engine for public medical knowledge

scientific article published on January 2014

Analyzing the potential for incorrect haplotype calls with different pharmacogenomic assays in different populations: a simulation based on 1000 Genomes data

scientific article

Approaches to neuroscience data integration

scientific article (publication date: July 2009)

Corrigendum: The BioPAX community standard for pathway data sharing

correction; published 7 December 2010

Creating a Translational Medicine Ontology

Creating a Translational Medicine Ontology

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

scientific article published on 23 August 2016

Deep contextualized embeddings for quantifying the informative content in biomedical text summarization

scientific article published on 04 October 2019

Drug-drug interaction data source survey and linking

scientific article

Effects of Medical Device Regulations on the Development of Stand-Alone Medical Software: A Pilot Study

Emerging practices for mapping and linking life sciences data using RDF — A case series ⬇️

scientific article

Entrez Neuron RDFa: a pragmatic semantic web application for data integration in neuroscience research

scientific article

Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

scholarly article published in Nature Biotechnology

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

scientific article published on 10 October 2016

Establishing a distributed system for the simple representation and integration of diverse scientific assertions

scientific article (publication date: 22 June 2010)

Examining perceptions of the usefulness and usability of a mobile-based system for pharmacogenomics clinical decision support: a mixed methods study

scientific article published on 8 February 2016

Examining perceptions of the usefulness and usability of a mobile-based system for pharmacogenomics clinical decision support: a mixed methods study

Examining perceptions of the usefulness and usability of a mobile-based system for pharmacogenomics clinical decision support: a mixed methods study

Exploring the application of deep learning techniques on medical text corpora

scientific article published on January 2014

Fast and Scalable Learning of Neuro-Symbolic Representations of Biomedical Knowledge ⬇️

scientific article published on 30 May 2018

Fast and scalable neural embedding models for biomedical sentence classification

Generating evidence for precision medicine: considerations made by the Ubiquitous Pharmacogenomics Consortium when designing and operationalizing the PREPARE study

scientific article published on 20 April 2020

How Many Patients Could Benefit From Pre-emptive Pharmacogenomic Testing and Decision Support? A Retrospective Study Based on Nationwide Austrian Claims Data

scientific article

Implementing pharmacogenomics decision support across seven European countries: The Ubiquitous Pharmacogenomics (U-PGx) project

scientific article published on 9 February 2018

Incidence of Exposure of Patients in the United States to Multiple Drugs for Which Pharmacogenomic Guidelines Are Available

scientific article

Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data

scientific article (publication date: 17 December 2010)

Life sciences on the Semantic Web: the Neurocommons and beyond

scientific article published on 12 March 2009

Linked open drug data for pharmaceutical research and development

scientific article

Machine Learning Enables Prediction of Cardiac Amyloidosis by Routine Laboratory Parameters: A Proof-of-Concept Study

scientific article published on 03 May 2020

Making data on essential pharmacogenes available for every patient everywhere: the Medicine Safety Code initiative

scientific article

Mapping global dynamics of benchmark creation and saturation in artificial intelligence

scientific article published in 2022

Neural sentence embedding models for semantic similarity estimation in the biomedical domain

scientific article published on 11 April 2019

Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies

scientific article

Pharmacogenomics in the pocket of every patient? A prototype based on quick response codes

scientific article published on 23 January 2013

Physicians searching the web for medical question answering: a European survey and local user studies

scientific article published in January 2013

Previewing Semantic Web Pipes

Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience

scientific article

Semantically enabling pharmacogenomic data for the realization of personalized medicine

scientific article (publication date: 2012)

Structured digital tables on the Semantic Web: toward a structured digital literature

scientific article (publication date: 24 August 2010)

Summarization of biomedical articles using domain-specific word embeddings and graph ranking

scientific article published on 18 May 2020

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

scientific article (publication date: 11 February 2013)

The Arden Syntax standard for clinical decision support: experiences and directions

scientific article

The BioPAX community standard for pathway data sharing

scientific article (publication date: September 2010)

The Importance of Gene-Drug-Drug-Interactions in Pharmacogenomics Decision Support: An Analysis Based on Austrian Claims Data

scientific article

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery ⬇️

scientific article published on 6 March 2014

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside ⬇️

scientific article (publication date: 17 May 2011)

Toward a complete dataset of drug-drug interaction information from publicly available sources

scientific article (publication date: June 2015)

Towards a global IT system for personalized medicine: the Medicine Safety Code initiative

scientific article published on January 2014

Towards a global IT system for personalized medicine: the Medicine Safety Code initiative

scientific article

Towards an interoperable information infrastructure providing decision support for genomic medicine

scientific article published on January 2011

Utilization and perceived problems of online medical resources and search tools among different groups of European physicians

scientific article (publication date: 26 June 2013)

Utilizing the Wikidata system to improve the quality of medical content in Wikipedia in diverse languages: a pilot study ⬇️

scientific article

We Divide, You Conquer: From Large-scale Ontology Alignment to Manageable Subtasks with a Lexical Index and Neural Embeddings

scientific article published in proceedings of the iswc 2018 posters & demonstrations, industry and blue sky ideas tracks

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