List of works by Sarala Wimalaratne

A common layer of interoperability for biomedical ontologies based on OWL EL.

scientific article

A framework for annotating and visualizing cellML models ⬇️

2009 doctoral thesis by Sarala M. Wimalaratne at University of Auckland

An infrastructure for ontology-based information systems in biomedicine: RICORDO case study

scientific article

BioModels linked dataset

scientific article

BioModels: Content, Features, Functionality, and Use

scientific article

BioModels: expanding horizons to include more modelling approaches and formats

scientific article published on 2 November 2017

BioModels: ten-year anniversary

scientific article

Biophysical annotation and representation of CellML models.

scientific article published on 29 June 2009

CellML metadata standards, associated tools and repositories.

scientific article published on May 2009

Controlled vocabularies and semantics in systems biology

scientific article (publication date: 25 October 2011)

Corrigendum: The BioPAX community standard for pathway data sharing

correction; published 7 December 2010

Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

scholarly article published in Nature Biotechnology

Erratum: The Systems Biology Graphical Notation

scholarly article published in Nature Biotechnology

FAIR Island: real-world examples of place-based open science

scientific article published in 2023

Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts.

scientific article published on 16 January 2009

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article (publication date: 20 March 2017)

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article

Identifiers.org - Compact Identifier Services in the Cloud

scientific article published on 08 October 2020

Integrating systems biology models and biomedical ontologies

scientific article (publication date: 11 August 2011)

Model annotation for synthetic biology: automating model to nucleotide sequence conversion

scientific article

Pharmacometrics Markup Language (PharmML): Opening New Perspectives for Model Exchange in Drug Development.

scientific article published on 15 June 2015

ProbOnto: ontology and knowledge base of probability distributions

scientific article

Revision history aware repositories of computational models of biological systems.

scientific article

SPARQL-enabled identifier conversion with Identifiers.org

scientific article

The BioPAX community standard for pathway data sharing

scientific article (publication date: September 2010)

The EBI RDF platform: linked open data for the life sciences

scientific article

The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions

scientific article (publication date: 30 August 2011)

The health care and life sciences community profile for dataset descriptions

scientific article (publication date: 2016)

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

article published in 2016

Uniform Resolution of Compact Identifiers for Biomedical Data

preprint

Uniform resolution of compact identifiers for biomedical data.

scientific article

Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR

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