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List of works by Jérôme Gouzy

<i>APOK3</i>, a pollen killer antidote in <i>Arabidopsis thaliana</i>

scientific article published on 06 June 2022

A Laser Dissection-RNAseq Analysis Highlights the Activation of Cytokinin Pathways by Nod Factors in the Medicago truncatula Root Epidermis

scientific article

A Medicago truncatula rdr6 allele impairs transgene silencing and endogenous phased siRNA production but not development

scientific article published on 24 July 2014

A Resource Allocation Trade-Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum

scientific article

A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes.

scientific article published on 13 June 2016

A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments

scientific article

A high-density physical map of Sinorhizobium meliloti 1021 chromosome derived from bacterial artificial chromosome library

scientific article published on August 1999

A regulatory network-based approach dissects late maturation processes related to the acquisition of desiccation tolerance and longevity of Medicago truncatula seeds

scientific article published on 08 August 2013

ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass).

scientific article published on 12 August 2015

Adaptive Horizontal Gene Transfers between Multiple Cheese-Associated Fungi

scientific article

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

scientific article

Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021

scientific article

Browsing protein families via the 'Rich Family Description' format

scientific article published in December 1999

Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae.

scientific article

Combined linkage and association mapping of flowering time in Sunflower (Helianthus annuus L.).

scientific article published on 23 February 2013

Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A.

scientific article

Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids

scientific article published on 2 November 2017

Computational analysis of the Plasmodiophora brassicae genome: mitochondrial sequence description and metabolic pathway database design

scientific article published on 15 November 2018

Consensus mapping of major resistance genes and independent QTL for quantitative resistance to sunflower downy mildew.

scientific article published on 11 May 2012

Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula

scientific article published in March 2004

Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi

scientific article

Draft Genome Sequence and Annotation of the Entomopathogenic Bacterium Xenorhabdus nematophila Strain F1

scientific article published on 20 June 2013

Draft Genome Sequence of Plasmopara viticola, the Grapevine Downy Mildew Pathogen

scientific article published on 22 September 2016

Enhanced in planta Fitness through Adaptive Mutations in EfpR, a Dual Regulator of Virulence and Metabolic Functions in the Plant Pathogen Ralstonia solanacearum

scientific article

EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes

scientific article published on 30 May 2014

Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism

scientific article

Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis.

scientific article

Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program.

scientific article

Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules

scientific article

FixJ-regulated genes evolved through promoter duplication in Sinorhizobium meliloti.

scientific article

FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences

scientific article

FrameDP: sensitive peptide detection on noisy matured sequences

scientific article published on 19 January 2009

Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species

scientific article

Genetic control of plasticity of oil yield for combined abiotic stresses using a joint approach of crop modeling and genome-wide association.

scientific article

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

scientific article

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

scientific article

Genome sequence of the plant pathogen Ralstonia solanacearum

scientific article

Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules

scientific article

Genome-wide association studies with proteomics data reveal genes important for synthesis, transport and packaging of globulins in legume seeds.

scientific article

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

scientific article

Graphical interface for ProDom domain families

scientific article published on 01 December 1996

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

scientific article published on 05 June 2017

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

scientific article published on 24 January 2020

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

scientific article

Identification of new potential regulators of the Medicago truncatula-Sinorhizobium meliloti symbiosis using a large-scale suppression subtractive hybridization approach

scientific article

Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression.

scientific article

InterPro--an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: December 2000)

InterPro: an integrated documentation resource for protein families, domains and functional sites

scientific article

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

scientific article

LeARN: a platform for detecting, clustering and annotating non-coding RNAs

scientific article

Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes

scholarly article

Multihost experimental evolution of the pathogen Ralstonia solanacearum unveils genes involved in adaptation to plants

article

Multiple recent horizontal transfers of a large genomic region in cheese making fungi

scientific article

Narcisse: a mirror view of conserved syntenies

scientific article

Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011.

scientific article published on 18 April 2013

Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid

scientific article

Partial chromosome sequence of Spiroplasma citri reveals extensive viral invasion and important gene decay.

scientific article

Phylogenetic exploration of bacterial genomic rearrangements

scientific article published on 01 March 2007

Polymorphic Microsatellite Markers for the Tetrapolar Anther-Smut Fungus Microbotryum saponariae Based on Genome Sequencing

scientific article (publication date: 2016)

Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata

scientific article published on 08 August 2019

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

scientific article published on January 2000

REMORA: a pilot in the ocean of BioMoby web-services

scientific article published on 19 January 2006

RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance.

scientific article published on 31 January 2015

Recent improvements of the ProDom database of protein domain families

scientific article published on January 1999

Regional assignment of genetic markers using a somatic cell hybrid panel: a WWW interactive program available for the pig genome.

scientific article

Sequencing the Sinorhizobium meliloti genome

article

Single-nucleotide polymorphism discovery and diversity in the model legume Medicago truncatula.

scientific article published on 27 September 2012

Specific versus non-specific immune responses in an invertebrate species evidenced by a comparative de novo sequencing study

scientific article

Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii

scientific article published on 07 January 2019

Symbiosis-related plant genes modulate molecular responses in an arbuscular mycorrhizal fungus during early root interactions

scientific article

Systemic signaling of the plant nitrogen status triggers specific transcriptome responses depending on the nitrogen source in Medicago truncatula

article

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: 2001)

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

The ProDom database of protein domain families

scientific article published on January 1998

The Rosa genome provides new insights into the domestication of modern roses. ⬇️

scientific article published on 30 April 2018

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

scientific article

The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti

scientific article

The composite genome of the legume symbiont Sinorhizobium meliloti

scientific article

The genome of Theobroma cacao

scientific article

The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome

scientific article

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

scientific article

Transcription reprogramming during root nodule development in Medicago truncatula

scientific article

Transcriptome database resource and gene expression atlas for the rose

scientific article

Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences

scientific article

Whole-genome landscape of Medicago truncatula symbiotic genes

article

Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates

scientific article published on 24 December 2016

XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences.

scientific article

myGenomeBrowser: building and sharing your own genome browser.

scientific article published on 23 December 2016

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