List of works by Pelin Yilmaz

25 years of serving the community with ribosomal RNA gene reference databases and tools

scientific article

A metagenomics portal for a democratized sequencing world

scientific article

A phylogenetic framework for the kingdom Fungi based on 18S rRNA gene sequences

scientific article published on 31 May 2017

Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus.

scientific article

Analysis of 23S rRNA genes in metagenomes - a case study from the Global Ocean Sampling Expedition

scientific article published on 14 June 2011

Anoxygenic photosynthesis controls oxygenic photosynthesis in a cyanobacterium from a sulfidic spring

scientific article

Applying graph theoretic approaches to microbial metagenomes

BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology

scientific article

CDinFusion--submission-ready, on-line integration of sequence and contextual data

scientific article

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

scientific article published in February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets

scientific article

Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes

scientific article

Ecological structuring of bacterial and archaeal taxa in surface ocean waters

scientific article

Expanding the World of Marine Bacterial and Archaeal Clades

scientific article

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Genomic Standards Consortium Projects

article

Genomic standards consortium projects

scientific article

Hydrogen sulfide can inhibit and enhance oxygenic photosynthesis in a cyanobacterium from sulfidic springs

article

Identification of Habitat-Specific Biomes of Aquatic Fungal Communities Using a Comprehensive Nearly Full-Length 18S rRNA Dataset Enriched with Contextual Data

scientific article

Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework

scientific article published on 05 March 2019

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.

scientific article

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources.

scientific article published on 12 October 2016

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.

scientific article

Meeting Report: GBIF hackathon-workshop on Darwin Core and sample data (22-24 May 2013)

scientific article

Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012)

scientific article

Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010

scientific article (publication date: 15 December 2010)

Megx.net: integrated database resource for marine ecological genomics.

scientific article

Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research

article by Gerhard Rambold et al published 1 January 2019 in Database

MetaBar - a tool for consistent contextual data acquisition and standards compliant submission

scientific article

Metagenomes: 23S Sequences

Minimum Information about a Biosynthetic Gene cluster.

scientific article published on August 2015

Minimum Information about an Uncultivated Virus Genome (MIUViG)

scientific article published on 17 December 2018

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article

Phylogeny-aware Identification and Correction of Taxonomically Mislabeled Sequences

scientific article published on 4 March 2016

Phylogeny-aware identification and correction of taxonomically mislabeled sequences.

scientific article

Plant specimen contextual data consensus

scientific article

Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities

scientific article published on 05 November 2020

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream

scientific article published in July 2015

Refining the taxonomic structure of the phylum Acidobacteria

scholarly article

SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees

scientific article published on 30 September 2017

SILVA: Comprehensive Databases for Quality Checked and Aligned Ribosomal RNA Sequence Data Compatible with ARB

scientific article

The Global Genome Biodiversity Network (GGBN) Data Standard specification

scientific article

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks

scientific article

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

scientific article (publication date: 2013)

The genomic standards consortium: bringing standards to life for microbial ecology

scientific article (publication date: October 2011)

The importance of designating type material for uncultured taxa

article

The magnitude of gonadotoxicity of chemotherapy drugs on ovarian follicles and granulosa cells varies depending upon the category of the drugs and the type of granulosa cells

scientific article published on 13 October 2015

The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle

scientific article

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

UniEuk: Time to Speak a Common Language in Protistology!

scientific article

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

scientific article published in September 2014

Versatile cyanobacteria control the timing and extent of sulfide production in a Proterozoic analog microbial mat

scientific article published on 07 August 2020

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