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List of works by Lynette Hirschman

ADE Eval: An Evaluation of Text Processing Systems for Adverse Event Extraction from Drug Labels for Pharmacovigilance

scientific article published on 02 October 2020

Accomplishments and challenges in literature data mining for biology

scientific article

Automatic classification of RDoC positive valence severity with a neural network

scientific article published on 07 July 2017

BioCreAtIvE task 1A: gene mention finding evaluation

scientific article

BioCreative III interactive task: an overview

scientific article

BioCreative-2012 virtual issue

scientific article published on 5 December 2012

BioCreative-IV virtual issue

scientific article published on 22 May 2014

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II ⬇️

scientific article published on November 17, 2012

Bootstrapping a de-identification system for narrative patient records: Cost-performance tradeoffs ⬇️

scientific article published on April 30, 2013

Critical assessment of information extraction systems in biology

scientific article

Crowdsourcing and curation: perspectives from biology and natural language processing

scientific article

Data preparation and interannotator agreement: BioCreAtIvE task 1B

scientific article

Evaluating the automatic mapping of human gene and protein mentions to unique identifiers

scientific article published on January 2007

Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup.

scientific article

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge

scientific article

Gene name identification and normalization using a model organism database

scientific article published in December 2004

Genomic Standards Consortium Projects

article

Genomic standards consortium projects

scientific article

Genomic standards consortium workshop: metagenomics, metadata and metaanalysis (M3).

scientific article published in January 2010

Habitat-Lite: a GSC case study based on free text terms for environmental metadata

scientific article published on June 2008

Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing

scientific article

ISMB 2003 Text Mining SIG Meeting Report

scientific article published on January 2003

Linking genes to literature: text mining, information extraction, and retrieval applications for biology

scientific article published on September 2008

MITRE system for clinical assertion status classification

scientific article

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 8

scientific article (publication date: 20 August 2010)

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9

scientific article (publication date: 4 December 2010)

Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7

scientific article (publication date: 20 July 2009)

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Special Interest Group at ISMB 2009

scientific article (publication date: 29 December 2009)

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.

scientific article

Meeting Report: BioSharing at ISMB 2010

scientific article (publication date: 4 December 2010)

Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010

scientific article (publication date: 4 December 2010)

Meeting report: the fifth Genomic Standards Consortium (GSC) workshop

scientific article published in June 2008

Meeting report: the fourth Genomic Standards Consortium (GSC) workshop

scientific article published in June 2008

Nephele: genotyping via complete composition vectors and MapReduce ⬇️

scientific article published on August 18, 2011

Optimizing annotation resources for natural language de-identification via a game theoretic framework

scientific article

Overview of BioCreAtIvE task 1B: normalized gene lists

scientific article

Overview of BioCreAtIvE: critical assessment of information extraction for biology

scientific article published in 2005

Overview of BioCreative II gene normalization

scientific article published on September 2008

Overview of the BioCreative III Workshop

scientific article

Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII

scientific article published in 2022

Overview of the interactive task in BioCreative V

scientific article (publication date: 2016)

Rapidly retargetable approaches to de-identification in medical records

scientific article published on 28 June 2007

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

scientific article (publication date: 2012)

Resilience of clinical text de-identified with "hiding in plain sight" to hostile reidentification attacks by human readers

scientific article published on 15 September 2020

Rutabaga by any other name: extracting biological names

scientific article published on August 2002

Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.

scientific article published on 14 July 2014

TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK ⬇️

scientific article published on January 1, 2008

Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)

scientific article (publication date: 8 October 2009)

Text mining for biology - the way forward: opinions from leading scientists

scientific article (publication date: 2008)

Text mining for the biocuration workflow

scientific article

The BioLink SIG Workshop at ISMB2004

scientific article published on January 2005

The FEBS Letters/BioCreative II.5 experiment: making biological information accessible.

scientific article

The Genomic Standards Consortium

scientific article (publication date: June 2011)

The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness

scientific article (publication date: 30 July 2012)

Toward a standards-compliant genomic and metagenomic publication record

scientific article

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