List of works by Christos Arvanitidis

0s and 1s in marine molecular research: a regional HPC perspective

scientific article published on 01 August 2021

A Hitchhiker's guide to Mediterranean marina travel for alien species

scientific article published on 20 April 2019

A Marine Biodiversity Observation Network for Genetic Monitoring of Hard-Bottom Communities (ARMS-MBON)

scientific article published on 30 November 2020

A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts

scientific article published on 18 December 2019

A decadal view of biodiversity informatics: challenges and priorities

scientific article

A field experiment on trophic relations within the benthic boundary layer (BBL) over an oligotrophic continental shelf

scholarly article by P. Koulouri published in October 2015

A global approach to mapping the environmental risk of harbours on aquatic systems

scientific article published in 2020

A global atlas of the environmental risk of marinas on water quality

scientific article published in December 2019

A massive update of non-indigenous species records in Mediterranean marinas. ⬇️

scientific article published on 24 October 2017

A new genus and species of Serpulidae (Annelida, Polychaeta, Sabellida) from the Caribbean Sea

scientific article (publication date: 22 December 2014)

Access to Natural History Collections – from SYNTHESYS to DiSSCo

scientific article published in 2019

Alien species spreading via biofouling on recreational vessels in the Mediterranean Sea

article published in 2019

Amphitritides kuehlmannisp. nov. (Polychaeta, Terebellidae, Amphitritinae) from the Aegean Sea, with comments on the genusAmphitritides Augener

scientific article published in 1995

An account of the taxonomy and distribution of Syllidae (Annelida, Polychaetes) in the eastern Mediterranean, with notes on the genus Prosphaerosyllis San Martín, 1984 in the Mediterranean

scientific article

An operational definition of essential biodiversity variables

Annelid fauna of a Mediterranean lagoon (Gialova Lagoon, south-west Greece): community structure in a severely fluctuating environment

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 79 no. 5, October 1999

Assessing evidence for random assembly of marine benthic communities from regional species pools

article

Automating the Curation Process of Historical Literature on Marine Biodiversity Using Text Mining: The DECO Workflow

scientific article published in 2022

Benthic Prokaryotic Community Response to Polycyclic Aromatic Hydrocarbon Chronic Exposure: Importance of Emission Sources in Mediterranean Ports

scientific article published in 2019

Benthic communities in three Mediterranean touristic ports: MAPMED project

scientific article published on 26 April 2021

Biodiversity Community Integrated Knowledge Library (BiCIKL)

Biodiversity conservation in Mediterranean and Black Sea lagoons: a trait-oriented approach to benthic invertebrate guilds

scientific article published on 19 August 2008

Biological geography of the European seas: results from the MacroBen database

scientific article published in 2009

Building capacity in biodiversity monitoring at the global scale

Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale

scientific article

CIGESMED for divers: Establishing a citizen science initiative for the mapping and monitoring of coralligenous assemblages in the Mediterranean Sea

scientific article published in 2016

Can coastal biodiversity measured in four Mediterranean sites be representative of the region? A test for the robustness of the NaGISA protocol by using the hard substrate syllid (Annelida, Polychaeta) taxo-communities as a surrogate

Case Studies of Capacity Building for Biodiversity Monitoring

Combined High-Throughput Imaging and Sequencing: Addressing the collections on demand requirement in SYNTHESYS+ project

scientific article published in 2019

Community engagement: The ‘last mile’ challenge for European research e-infrastructures

scientific article

Comparative Study of Marine Cave Communities in a Protected Area of the South-Eastern Aegean Sea, Greece

scientific article published on 13 May 2022

Composition of the organismic assemblage associated with Caretta caretta

article

Conflicts in some of the World harbours: what needs to happen next?

Consistent patterns of spatial variability between NE Atlantic and Mediterranean rocky shores

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 97 no. 3, November 2016

Contribution to the morphological description of the marine leech, <i>Ozobranchus</i> <i>margoi</i> (Apáthy) (Rhynchobdellida: Ozobranchidae) by using combined histology, micro-CT and SEM.

scientific article

Correction: A massive update of non-indigenous species records in Mediterranean marinas ⬇️

scientific article published on 14 November 2017

Corrigendum to: PEMA: a flexible pipeline for environmental DNA metabarcoding analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes

scientific article published on 01 December 2020

Data Policy and Data Sharing Agreement in the LifeWatchGreece Research Infrastructure

scientific article

Data sharing tools adopted by the European Biodiversity Observation Network Project

Developmental temperature has persistent, sexually dimorphic effects on zebrafish cardiac anatomy.

scientific article

Diverse effects of invasive ecosystem engineers on marine biodiversity and ecosystem functions - a global review and meta-analysis

scientific article

Do interrelationships among benthic components mirror disturbance levels?

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 92 no. 2, September 2011

Do multivariate analyses incorporating changes in pattern across taxonomic levels reveal anthropogenic stress in Mediterranean lagoons?

scientific article published in 2009

EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases

scholarly article by Sarah Faulwetter et al published 12 September 2016 in Research Ideas and Outcomes

EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases

scholarly article by Sarah Faulwetter et al published 6 July 2016 in Research Ideas and Outcomes

ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life

scientific article (publication date: 24 January 2015)

EXTRACT 2.0: interactive identification of biological entities mentioned in text to assist database curation and knowledge extraction

scientific article published in 2017

EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation

scientific article (publication date: 2016)

Ecological status assessment based on benthic macrofauna of three Mediterranean ports: Comparisons across seasons, activities and regions

scientific article published on 25 February 2020

ElNet: The Greek biodiversity transitional waters information system. An exemplar for the development of distributed information networks in Europe

article

Engaging the broader community in biodiversity research: the concept of the COMBER pilot project for divers in ViBRANT

scientific article

Environmental variability and heavy metal concentrations from five lagoons in the Ionian Sea (Amvrakikos Gulf, W Greece).

scientific article

Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 97 no. 3, October 2016

Estimating lagoonal biodiversity in Greece: comparison of rapid assessment techniques

article

Exercise-induced lordosis in zebrafish Danio rerio (Hamilton, 1822)

scientific article published on 19 December 2019

Facing e-Biodiversity Challenges Together: GBIO framework-based synergies between DiSSCo and LifeWatch ERIC

scientific article

Flue Gas Desulfurization at High Temperatures: A Review

article

Gearing Up for Warmer Times: Transcriptomic Response of Spongia officinalis to Elevated Temperatures Reveals Recruited Mechanisms and Potential for Resilience

scientific article published in 2020

Genetic diversity of Nephtys hombergii (Phyllodocida, Polychaeta) associated with environmental factors in a highly fluctuating ecosystem

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 98 no. 4, January 2017

Geographic patterns of biodiversity in European coastal marine benthos

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 97 no. 3, September 2016

Hacking Infrastructures Together: Towards better interoperability of infrastructures

scientific article published in 2021

Harnessing positive species interactions as a tool against climate-driven loss of coastal biodiversity

scientific article published on 04 September 2018

Imposex and organotin compounds in ports of the Mediterranean and the Atlantic: Is the story over?

scientific article published on 14 July 2016

Indicators for Sea-floor Integrity under the European Marine Strategy Framework Directive

scientific article published in January 2012

Interrelationships of bacteria, meiofauna and macrofauna in a Mediterranean sedimentary beach (Maremma Park, NW Italy)

article

Introduction to the Greek Taxon Information System (GTIS) in LifeWatchGreece: the construction of the Preliminary Checklists of Species of Greece

scientific article

Large-scale impacts of bottom trawling on shelf primary productivity

Large-scale studies of the European benthos: the MacroBen database

scientific article published in 2009

Liberate the power of biodiversity literature as FAIR digital objects

scientific article published on 30 April 2024

LifeWatch ERIC Strategic Working Plan Outcomes

LifeWatch Greece data-services: Discovering Biodiversity Data using Semantic Web Technologies

scientific article

LifeWatchGreece: Construction and operation of the National Research Infrastructure (ESFRI).

scientific article

MacroBen integrated database on benthic invertebrates of European continental shelves: a tool for large-scale analysis across Europe

article published in 2009

Macroalgal blooms alter community structure and primary productivity in marine ecosystems

scientific article

Macrobenthic community changes due to dystrophic events and freshwater inflow: Changes in space and time in a Mediterranean lagoon (Gialova lagoon, SW Greece)

scientific article published in 2011

Marine monitoring in Europe: is it adequate to address environmental threats and pressures?

scientific article published on 19 February 2020

MedOBIS: biogeographic information system for the eastern Mediterranean and Black Sea

scholarly article by Christos Arvanitidis et al published 3 July 2006 in Marine Ecology Progress Series

Mediterranean Lagoons Revisited: Weakness and Efficiency of the Rapid Biodiversity Assessment Techniques in a Severely Fluctuating Environment

Meta-analysis of a large data set with Water Framework Directive indicators and calibration of a Benthic Quality Index at the family level

scientific article published in 2012

Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies

scientific article

Micro-CT for Biological and Biomedical Studies: A Comparison of Imaging Techniques

scientific article published in September 2021

Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells

scientific article published on 07 December 2021

Micro-CTvlab: A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT)

scientific article

Micro-computed tomography for natural history specimens: a handbook of best practice protocols

scientific article published on 30 April 2019

Micro-computed tomography: Introducing new dimensions to taxonomy

scientific article

MidMedPol: Polychaetes from midlittoral rocky shores in Greece and Italy (Mediterranean Sea)

scientific article (publication date: 2013)

Midlittoral polychaete communities in the Eastern Mediterranean Sea: new information from the implementation of the Natural Geography in Shore Areas (NaGISA) protocol and comparisons at local and regional scales

scientific article published in 2017

Molluscan diversity along a Mediterranean soft bottom sublittoral ecotone

scientific article published in 2006

Multicausal environmental severity: A flexible framework for microtidal sandy beaches and the role of polychaetes as an indicator taxon

scientific article published in 2006

On the use of predator traits and distribution in environmental impact assessment: the trophic/dispersal sufficiency concept

OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction

scientific article (publication date: November 2013)

One Step forward: Benthic Pelagic Coupling and Indicators for Environmental Status

scientific article published on 23 October 2015

Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab).

scientific article

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes

scientific article published on 01 March 2020

PESI - a taxonomic backbone for Europe

scientific article

Polychaetes of Greece: an updated and annotated checklist

scientific article

Polytraits: A database on biological traits of marine polychaetes

scientific article

Projecting changes in the distribution and productivity of living marine resources: A critical review of the suite of modelling approaches used in the large European project VECTORS

article

Protecting marine biodiversity to preserve ecosystem functioning: A tribute to Carlo Heip

scholarly article by Peter Herman published in April 2015

Recommendations for interoperability among infrastructures

scientific article published on 14 October 2022

Recommendations for use of annotations and persistent identifiers in taxonomy and biodiversity publishing

scientific article published on 16 November 2022

ReefMedMol: Mollusca from the infralittoral rocky shores - the biocoenosis of photophilic algae - in the Mediterranean Sea

scientific article

Reflectance spectra classification for the rapid assessment of water ecological quality in Mediterranean ports

scholarly article

Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives

scientific article published in 2022

Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives

Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal? ⬇️

article published in 2018

Resistance of polychaete species and trait patterns to simulated species loss in coastal lagoons

scholarly article by Sarah Faulwetter published in April 2015

SYNTHESYS+ Abridged Grant Proposal

Published grant proposal

Salinity is the major factor influencing the sediment bacterial communities in a Mediterranean lagoonal complex (Amvrakikos Gulf, Ionian Sea).

scientific article published on 29 January 2016

Scaling up experimental ocean acidification and warming research: from individuals to the ecosystem

scientific article

Sediment microbial taxonomic and functional diversity in a natural salinity gradient challenge Remane's "species minimum" concept

scientific article published on 13 October 2017

Spatial patterns of biodiversity in the Black Sea: An assessment using benthic polychaetes

article published in 2010

Spatio-temporal benthic biodiversity patterns and pollution pressure in three Mediterranean touristic ports

scientific article published on 19 December 2017

Sphaerosyllis levantina sp. n. (Annelida) from the eastern Mediterranean, with notes on character variation in Sphaerosyllis hystrix Claparède, 1863

scientific article

Status, values and present threats in Heraklion harbour (Crete, Greece)

Taxonomic and functional surrogates of sessile benthic diversity in Mediterranean marine caves

scientific article published on 6 September 2017

Testing the robustness of Citizen Science projects: Evaluating the results of pilot project COMBER

scientific article

Testing the robustness of a coastal biodiversity data protocol in the Mediterranean: insights from the molluskan assemblages from the sublittoral macroalgae communities

The Collaborative Potential of Research Infrastructures in Addressing Global Scientific Questions

scientific article published in 2019

The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text

scientific article (publication date: 18 June 2013)

The genusParadiopatra(Polychaeta, Onuphidae) in the Mediterranean with the description ofParadiopatra calliopaesp. nov.

scientific article published in 1997

The role of physical variables in biodiversity patterns of intertidal macroalgae along European coasts

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 97 no. 3, December 2016

The validation case on invasive crustaceans of the LifeWatch ERIC Internal Joint Initiative: State of the art and next steps forward

scientific article published in 2023

There are no whole truths in meta-analyses: all their truths are half-truths

scientific article published on 28 May 2015

Towards Interlinked FAIR Biodiversity Knowledge: The BiCIKL perspective

scientific article published in 2021

Unifying European Biodiversity Informatics (BioUnify)

scientific article published on 15 January 2016

Volumetric Tissue Imaging of Surgical Tissue Specimens Using Micro–Computed Tomography: An Emerging Digital Pathology Modality for Nondestructive, Slide-Free Microscopy—Clinical Applications of Digital Pathology in 3 Dimensions

scientific article published in 2022

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