List of works - Gert Vriend

3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine

scientific article

A database of protein structure families with common folding motifs ⬇️

scientific article published on December 1, 1992

A family-based approach reveals the function of residues in the nuclear receptor ligand-binding domain

scientific article published in August 2004

A molecular switch driving inactivation in the cardiac K+ channel HERG

scientific article

A new generation of crystallographic validation tools for the protein data bank

scientific article

A novel COCH mutation associated with autosomal dominant nonsyndromic hearing loss disrupts the structural stability of the vWFA2 domain

scientific article

A series of PDB related databases for everyday needs

scientific article

Cloning and sequence analysis of the gene encoding human lymphocyte prolyl endopeptidase

scientific article

Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis

scientific article (publication date: September 2002)

Correcting ligands, metabolites, and pathways

scientific article published on 28 November 2006

Correlated mutations select misfolded from properly folded proteins

scientific article

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

scientific article

Crystal structure of the p-hydroxybenzoate hydroxylase-substrate complex refined at 1.9 A resolution. Analysis of the enzyme-substrate and enzyme-product complexes

scientific article

Detection of trans-cis flips and peptide-plane flips in protein structures

scientific article

Distinct clinical phenotypes associated with a mutation in the mitochondrial translation elongation factor EFTs

scientific article

Drug design for ever, from hype to hope

scientific article (publication date: 2012)

Errors in protein structures

scientific article (publication date: 23 May 1996)

Exploring protein dynamics space: the dynasome as the missing link between protein structure and function

scientific article

Extreme stabilization of a thermolysin-like protease by an engineered disulfide bond

scientific article (publication date: 25 April 1997)

Facilities that make the PDB data collection more powerful

scientific article published on 02 December 2019

Four-helix bundle topology re-engineered: monomeric Rop protein variants with different loop arrangements ⬇️

scientific article (publication date: November 2001)

GPCRDB information system for G protein-coupled receptors

scientific article

GPCRDB: an information system for G protein-coupled receptors

scientific article (published in 1998)

GPCRDB: information system for G protein-coupled receptors

scientific article

GPCRdb: the G protein-coupled receptor database - an introduction

scientific article

GeneSeeker: extraction and integration of human disease-related information from web-based genetic databases

scientific article

Generic GPCR residue numbers - aligning topology maps while minding the gaps

scientific article

Homology modeling, model and software evaluation: three related resources ⬇️

scientific article published on January 1, 1998

Human dectin-1 deficiency and mucocutaneous fungal infections

scientific article

Identification of functionally conserved residues with the use of entropy-variability plots

scientific article published in September 2003

Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field

scientific article (publication date: 15 May 2002)

Integrating GPCR-specific information with full text articles

scientific article (publication date: 12 September 2011)

Isolation of llama antibody fragments for prevention of dandruff by phage display in shampoo

scientific article

Key challenges for the creation and maintenance of specialist protein resources

scientific article

MRS: a fast and compact retrieval system for biological data

scientific article

Molden 2.0: quantum chemistry meets proteins

scientific article published on 27 July 2017

Mutations of ESRRB encoding estrogen-related receptor beta cause autosomal-recessive nonsyndromic hearing impairment DFNB35.

scientific article

New Biological Insights from Better Structure Models

scientific article

NewProt - a protein engineering portal

scientific article

NucleaRDB: information system for nuclear receptors

scientific article

Objectively judging the quality of a protein structure from a Ramachandran plot ⬇️

scientific article published on August 1, 1997

PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules

scientific article published in June 1996

Prediction of protein residue contacts with a PDB-derived likelihood matrix.

scientific article

Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces

scientific article

Refined 1.83 A structure of trypanosomal triosephosphate isomerase crystallized in the presence of 2.4 M-ammonium sulphate. A comparison with the structure of the trypanosomal triosephosphate isomerase-glycerol-3-phosphate complex

scientific article

Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base

scientific article

Rubredoxin reductase of Pseudomonas oleovorans. Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprints

scientific article

Status quo of annotation of human disease variants.

scientific article

Structural and mutagenesis studies of leishmania triosephosphate isomerase: a point mutation can convert a mesophilic enzyme into a superstable enzyme without losing catalytic power

scientific article

Structural determinants of the stability of thermolysin-like proteinases ⬇️

scientific article published on May 1, 1995

Structure of a human common cold virus and functional relationship to other picornaviruses

scientific article

Synergism with the coactivator OBF-1 (OCA-B, BOB-1) is mediated by a specific POU dimer configuration

scientific article (publication date: 8 December 2000)

Systematic generation of in vivo G protein-coupled receptor mutants in the rat.

scientific article published on 8 June 2010

The EMBRACE web service collection

scientific article (publication date: July 2010)

The effect of novel mutations on the structure and enzymatic activity of unconventional myosins associated with autosomal dominant non-syndromic hearing loss.

scientific article

Tools and data services registry: a community effort to document bioinformatics resources

scientific article

Traditional biomolecular structure determination by NMR spectroscopy allows for major errors

scientific article

Validation of protein structures derived by NMR spectroscopy

scientific article (publication date: December 2004)

WHAT IF: a molecular modeling and drug design program

scientific article (publication date: March 1990)

WIWS: a protein structure bioinformatics Web service collection

scientific article

YASARA View - molecular graphics for all devices - from smartphones to workstations

scientific article

List of works by Gert Vriend

3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine

A database of protein structure families with common folding motifs ⬇️

A family-based approach reveals the function of residues in the nuclear receptor ligand-binding domain

A molecular switch driving inactivation in the cardiac K+ channel HERG

A new generation of crystallographic validation tools for the protein data bank

A novel COCH mutation associated with autosomal dominant nonsyndromic hearing loss disrupts the structural stability of the vWFA2 domain

A series of PDB related databases for everyday needs

Cloning and sequence analysis of the gene encoding human lymphocyte prolyl endopeptidase

Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis

Correcting ligands, metabolites, and pathways

Correlated mutations select misfolded from properly folded proteins

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

Crystal structure of the p-hydroxybenzoate hydroxylase-substrate complex refined at 1.9 A resolution. Analysis of the enzyme-substrate and enzyme-product complexes

Detection of trans-cis flips and peptide-plane flips in protein structures

Distinct clinical phenotypes associated with a mutation in the mitochondrial translation elongation factor EFTs

Drug design for ever, from hype to hope

Errors in protein structures

Exploring protein dynamics space: the dynasome as the missing link between protein structure and function

Extreme stabilization of a thermolysin-like protease by an engineered disulfide bond

Facilities that make the PDB data collection more powerful

Four-helix bundle topology re-engineered: monomeric Rop protein variants with different loop arrangements ⬇️

GPCRDB information system for G protein-coupled receptors

GPCRDB: an information system for G protein-coupled receptors

GPCRDB: information system for G protein-coupled receptors

GPCRdb: the G protein-coupled receptor database - an introduction

GeneSeeker: extraction and integration of human disease-related information from web-based genetic databases

Generic GPCR residue numbers - aligning topology maps while minding the gaps

Homology modeling, model and software evaluation: three related resources ⬇️

Human dectin-1 deficiency and mucocutaneous fungal infections

Identification of functionally conserved residues with the use of entropy-variability plots

Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field

Integrating GPCR-specific information with full text articles

Isolation of llama antibody fragments for prevention of dandruff by phage display in shampoo

Key challenges for the creation and maintenance of specialist protein resources

MRS: a fast and compact retrieval system for biological data

Molden 2.0: quantum chemistry meets proteins

Mutations of ESRRB encoding estrogen-related receptor beta cause autosomal-recessive nonsyndromic hearing impairment DFNB35.

New Biological Insights from Better Structure Models

NewProt - a protein engineering portal

NucleaRDB: information system for nuclear receptors

Objectively judging the quality of a protein structure from a Ramachandran plot ⬇️

PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules

Prediction of protein residue contacts with a PDB-derived likelihood matrix.

Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces

Refined 1.83 A structure of trypanosomal triosephosphate isomerase crystallized in the presence of 2.4 M-ammonium sulphate. A comparison with the structure of the trypanosomal triosephosphate isomerase-glycerol-3-phosphate complex

Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base

Rubredoxin reductase of Pseudomonas oleovorans. Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprints

Status quo of annotation of human disease variants.

Structural and mutagenesis studies of leishmania triosephosphate isomerase: a point mutation can convert a mesophilic enzyme into a superstable enzyme without losing catalytic power

Structural determinants of the stability of thermolysin-like proteinases ⬇️

Structure of a human common cold virus and functional relationship to other picornaviruses

Synergism with the coactivator OBF-1 (OCA-B, BOB-1) is mediated by a specific POU dimer configuration

Systematic generation of in vivo G protein-coupled receptor mutants in the rat.

The EMBRACE web service collection

The effect of novel mutations on the structure and enzymatic activity of unconventional myosins associated with autosomal dominant non-syndromic hearing loss.

Tools and data services registry: a community effort to document bioinformatics resources

Traditional biomolecular structure determination by NMR spectroscopy allows for major errors

Validation of protein structures derived by NMR spectroscopy

WHAT IF: a molecular modeling and drug design program

WIWS: a protein structure bioinformatics Web service collection

YASARA View - molecular graphics for all devices - from smartphones to workstations