List of works by Sylvain Brisse

"A re-evaluation of M. prototuberculosis": continuing the debate

scientific article

"Epidemic clones" of Listeria monocytogenes are widespread and ancient clonal groups

scientific article published on 04 September 2013

1926-2016: 90 Years of listeriology

scientific article

A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies

scientific article published in 2022

A new perspective on Listeria monocytogenes evolution

scientific article

Acinetobacter seifertii sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex isolated from human clinical specimens

scientific article

Aedes albopictus Mosquito: The Main Vector of the 2007 Chikungunya Outbreak in Gabon

scientific article (publication date: 2009)

AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries

scientific article

AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads

scientific article published in August 2013

Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis

scientific article published on 19 August 2005

Application of whole genome sequencing to query a potential outbreak of Elizabethkingia anophelis in Ontario, Canada

scientific article published on 24 April 2019

Association of tellurite resistance with hypervirulent clonal groups of Klebsiella pneumoniae

scientific article published on 28 January 2015

Automated ribotyping of vancomycin-resistant Enterococcus faecium isolates

scientific article

Azole preexposure affects the Aspergillus fumigatus population in patients

scientific article

Bacteremia: Clinical Expression and Bacterial Genomics

CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections

scientific article (publication date: 2012)

Carbapenem-resistant Klebsiella pneumoniae exhibit variability in capsular polysaccharide and capsule associated virulence traits

scientific article published on 14 March 2014

Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis

scientific article published on 26 April 2019

Characterization of an extended-spectrum class A β-lactamase from a novel enterobacterial species taxonomically related to Rahnella spp./Ewingella spp.

scientific article published on 10 April 2013

Characterization of the cryptic Escherichia lineages: rapid identification and prevalence

scientific article published on 8 June 2011

Characterization of the novel Listeria monocytogenes PCR serogrouping profile IVb-v1.

scientific article

Chikungunya outbreaks

scientific article

Clonogrouping, a Rapid Multiplex PCR Method for Identification of Major Clones of Listeria monocytogenes

scientific article

Community-acquired meningitis caused by a CG86 hypervirulent Klebsiella pneumoniae strain: first case report in the Caribbean

scientific article

Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor

scientific article

Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex

scientific article published on May 2002

Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences

scientific article

Comparative phylogenomics of ESBL-, AmpC- and carbapenemase-producing <i>Klebsiella pneumoniae</i> originating from companion animals and humans

scientific article published in 2022

Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity

scientific article published on 25 March 2014

Complete Genome Sequences of Bordetella pertussis Clinical Isolate FR5810 and Reference Strain Tohama from Combined Oxford Nanopore and Illumina Sequencing

Complete nucleotide sequence of the first KPC-2- and SHV-12-encoding IncX plasmid, pKpS90, from Klebsiella pneumoniae

scientific article published on 22 October 2012

Complete nucleotide sequence of two multidrug-resistant IncR plasmids from Klebsiella pneumoniae

scientific article published on 21 April 2014

Correction: Aedes albopictus Mosquito: The Main Vector of the 2007 Chikungunya Outbreak in Gabon.

scientific article

Corrigendum: Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

scientific article

Deciphering bartonella diversity, recombination, and host specificity in a rodent community

scientific article published in 2013

Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov

preprint

Description of Klebsiella grimontii sp. nov.

scientific article

Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstrat

scientific article

Detection of OXA-48 carbapenemase in the pandemic clone Escherichia coli O25b:H4-ST131 in the course of investigation of an outbreak of OXA-48-producing Klebsiella pneumoniae

scientific article published on 7 May 2012

Development of variable number of tandem repeats typing schemes for Ralstonia solanacearum, the agent of bacterial wilt, banana Moko disease and potato brown rot.

scientific article published on 29 January 2013

Diagnosis in France of a Non-Toxigenic tox Gene-Bearing Strain of Corynebacterium diphtheriae in a Young Male Back From Senegal

scientific article

Differential contribution of AcrAB and OqxAB efflux pumps to multidrug resistance and virulence in Klebsiella pneumoniae

scientific article published on 4 September 2014

Discrimination of Klebsiella pneumoniae and Klebsiella oxytoca phylogenetic groups and other Klebsiella species by use of amplified fragment length polymorphism

scientific article published in January 2004

Diversity of aminoglycoside-resistance genes and their association with class 1 integrons among strains of pan-European Acinetobacter baumannii clones

scientific article

Diversity, virulence, and antimicrobial resistance of the KPC-producing Klebsiella pneumoniae ST307 clone

scientific article

Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease

scientific article

Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II.

scientific article published on 13 May 2008

Emerging severe and fatal infections due to Klebsiella pneumoniae in two university hospitals in France

scientific article

Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1

article

Erratum: Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

scientific article

Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples

scientific article published on 29 June 2011

Evaluation of the Etest ESBL and the BD Phoenix, VITEK 1, and VITEK 2 automated instruments for detection of extended-spectrum beta-lactamases in multiresistant Escherichia coli and Klebsiella spp.

scientific article

Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing

scientific article

Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype

scientific article

Evolution and population structure of Salmonella enterica serovar Newport

scientific article

Evolutionary history of Helicobacter pylori sequences reflect past human migrations in Southeast Asia

scientific article

Evolutionary history of Salmonella Typhi illustrates a new pattern of epidemiologic dynamics

scientific article published in May 2007

Evolutionary history of Salmonella typhi

scientific article

Expansion of European vacA and cagA alleles to East-Asian Helicobacter pylori strains in Cambodia

scientific article published on 17 August 2011

First neisseria gonorrhoeae genotyping analysis in france: identification of a strain cluster with reduced susceptibility to Ceftriaxone

scientific article published on 30 September 2009

From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes

scientific article published on 16 December 2008

Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak

scientific article

Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications

scientific article published on 17 February 2016

Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough.

scientific article

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

scientific article published on 22 June 2015

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

scientific article published on 06 January 2013

Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups.

scientific article

Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (forme

scientific article

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

scientific article

High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis

scientific article

High resolution typing of <i>Staphylococcus epidermidis</i> based on cgMLST to investigate the hospital spread of multidrug resistant clones

scientific article published on 16 December 2020

Identification and antimicrobial susceptibility of 100 Klebsiella animal clinical isolates

scientific article published on 22 January 2005

Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry

scientific article published on August 2006

Identification of Klebsiella oxytoca using a specific PCR assay targeting the polygalacturonase pehX gene.

scientific article published in October 2003

Identification of and Related Phylogroups by MALDI-TOF Mass Spectrometry

scientific article published in 2018

In silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization

scientific article

In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes

scientific article published on 26 March 2022

In-vivo loss of carbapenem resistance by extensively drug-resistant Klebsiella pneumoniae during treatment via porin expression modification

scientific article

Inter-hospital outbreak of Klebsiella pneumoniae producing KPC-2 carbapenemase in Ireland.

scientific article

Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors

scientific article published on 13 May 2020

Klebsiella variicola is a frequent cause of bloodstream infection in the stockholm area, and associated with higher mortality compared to K. pneumoniae

scientific article

Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity

scientific article published in 2013

Leptospira mayottensis sp. nov., a pathogenic species of the genus Leptospira isolated from humans

scientific article

LiSEQ - whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe

article published in 2019

Liver Abscess Caused by Infection with Community-Acquired Klebsiella quasipneumoniae subsp. quasipneumoniae

scientific article published on March 2016

Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae

scientific article

Microbial molecular markers and epidemiological surveillance in the era of high throughput sequencing: an update from the IMMEM-10 conference.

scientific article published on 31 January 2014

Microbiological and clinical characteristics of bacteraemia caused by the hypermucoviscosity phenotype of Klebsiella pneumoniae in Korea

scientific article published in 2013

Molecular Epidemiology of Colonizing and Infecting Isolates of Klebsiella pneumoniae

scientific article published on September 2016

Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014.

scientific article published on 15 November 2017

Molecular epidemiology of carbapenem non-susceptible Acinetobacter baumannii in France

scientific article

Molecular epidemiology of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae strains in a university hospital in Tunis, Tunisia, 1999-2005.

scientific article

Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster

scientific article

Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Côte d'Ivoire.

scientific article published in January 2011

Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov.

scientific article

Multilocus sequence typing analysis of Staphylococcus lugdunensis implies a clonal population structure

scientific article published on 11 July 2012

Multilocus sequence typing as a replacement for serotyping in Salmonella enterica

scientific article published in 2012

Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates

scientific article published on August 2005

Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination

scientific article

Multilocus sequence typing scheme for the Mycobacterium abscessus complex

scientific article published on 31 December 2013

Multiplex PCR for detection of seven virulence factors and K1/K2 capsular serotypes of Klebsiella pneumoniae

scientific article published on October 2014

Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona

scientific article

New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae

scientific article published on 03 May 2019

Occurrence and spread of SHV extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates in Curacao.

scientific article

Optimized Multilocus variable-number tandem-repeat analysis assay and its complementarity with pulsed-field gel electrophoresis and multilocus sequence typing for Listeria monocytogenes clone identification and surveillance

scientific article published on 10 April 2013

Origin, spread and demography of the Mycobacterium tuberculosis complex

scientific article published in 2008

Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing.

scientific article published on 24 April 2018

PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma

scientific article

Patterns of selection on Plasmodium falciparum erythrocyte-binding antigens after the colonization of the New World

scientific article published in April 2014

Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance

scientific article published on 17 August 2023

Phages against non-capsulated Klebsiella pneumoniae : broader host range, slower resistance

scientific article published on 4 August 2022

Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains

scientific article

Phylogenetic distribution of CTX-M- and non-extended-spectrum-β-lactamase-producing Escherichia coli isolates: group B2 isolates, except clone ST131, rarely produce CTX-M enzymes.

scientific article

Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing

scientific article

Population Genetic Structure of Anopheles gambiae and Anopheles arabiensis in Niger

Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises

scientific article

Population genetic structure of Anopheles gambiae and Anopheles arabiensis in Niger

scientific article published on May 2010

Population genomics and antimicrobial resistance in Corynebacterium diphtheriae

scientific article published on 27 November 2020

Probable zoonotic leprosy in the southern United States

scientific article

Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter

scientific article

Rapid genotyping of Achromobacter xylosoxidans, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa and Stenotrophomonas maltophilia isolates using melting curve analysis of RAPD-generated DNA fragments (McRAPD).

scientific article published on 12 February 2011

Rare meningitis case in a Danish male

scientific article published in 2018

Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France

scientific article published on 15 September 2017

Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing

scientific article

Reconstructed ancestral sequences improve pathogen identification using resequencing DNA microarrays

scientific article (publication date: 20 December 2010)

Regional occurrence of plasmid-mediated carbapenem-hydrolyzing oxacillinase OXA-58 in Acinetobacter spp. in Europe

scientific article

Repetitive-DNA-element PCR fingerprinting and antibiotic resistance of pan-European multi-resistant Acinetobacter baumannii clone III strains

scientific article published in September 2005

Resequencing microarray technology for genotyping human papillomavirus in cervical smears

scientific article

Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., an

scientific article published on 30 August 2017

Rhinoscleroma pathogenesis: The type K3 capsule of Klebsiella rhinoscleromatis is a virulence factor not involved in Mikulicz cells formation

scientific article published on 30 January 2018

Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca

scientific article

Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing

scientific article published on 11 January 2010

Species distribution and ribotype diversity of Burkholderia cepacia complex isolates from French patients with cystic fibrosis

scientific article published on October 2004

Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov

scientific article published in 2018

The Genus Klebsiella

The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples

scientific article published on 18 March 2020

The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool

scientific article

Tracking Nosocomial Klebsiella pneumoniae Infections and Outbreaks by Whole-Genome Analysis: Small-Scale Italian Scenario within a Single Hospital

scientific article

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

scientific article published in February 2016

Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples

scientific article published on 16 January 2009

Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B.

scientific article published on December 2005

Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization

scientific article

Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes

scientific article

Worldwide distribution of major clones of Listeria monocytogenes

scientific article

wzi Gene sequencing, a rapid method for determination of capsular type for Klebsiella strains

scientific article published on 2 October 2013

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