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List of works by Jonathan Alvarsson

A confidence predictor for logD using conformal regression and a support-vector machine

scientific article published on 3 April 2018

Benchmarking study of parameter variation when using signature fingerprints together with support vector machines

scientific article published on 28 October 2014

Bioclipse 2: a scriptable integration platform for the life sciences

scientific article

Bioclipse-R: integrating management and visualization of life science data with statistical analysis

scientific article

Brunn: an open source laboratory information system for microplates with a graphical plate layout design process

scientific article

ChemInform Abstract: Open Source Drug Discovery with Bioclipse

Erratum to: The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

scientific article published on 20 September 2017

Evaluating parameters for ligand-based modeling with random forest on sparse data sets

scientific article published on 11 October 2018

Ex Vivo Assessment of Drug Activity in Patient Tumor Cells as a Basis for Tailored Cancer Therapy

Introduction to Pharmaceutical Bioinformatics

Third edition of the book originally published in 2010

Large-scale ligand-based predictive modelling using support vector machines

scientific article (publication date: 2016)

Ligand-based target prediction with signature fingerprints

scientific article published on 3 October 2014

Linking the Resource Description Framework to cheminformatics and proteochemometrics

scientific article

Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on

scientific article published in 2011

Open Source Drug Discovery with Bioclipse

scientific article published in 2013

Open source drug discovery with Bioclipse

scientific article from 2012

Predicting Off-Target Binding Profiles With Confidence Using Conformal Prediction

Predicting target profiles with confidence as a service using docking scores

scientific article published on 15 October 2020

Predicting with confidence: Using conformal prediction in drug discovery

scientific article published on 16 October 2020

Scaling predictive modeling in drug development with cloud computing

scientific article

SciPipe - A workflow library for agile development of complex and dynamic bioinformatics pipelines

article

SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

SciPipe—Turning Scientific Workflows into Computer Programs

scientific article published on 30 April 2019

The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

scientific article

Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles

scientific article