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List of works by Thomas Kelder

A combined transcriptomics and lipidomics analysis of subcutaneous, epididymal and mesenteric adipose tissue reveals marked functional differences

scientific article (publication date: 2010)

A systems biology approach to understand the pathophysiological mechanisms of cardiac pathological hypertrophy associated with rosiglitazone

scientific article

A user-friendly workflow for analysis of Illumina gene expression bead array data available at the arrayanalysis.org portal

scientific article

CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis

scientific article (publication date: 2013)

Differential Effects of Drug Interventions and Dietary Lifestyle in Developing Type 2 Diabetes and Complications: A Systems Biology Analysis in LDLr−/− Mice ⬇️

scientific article published on February 15, 2013

Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia

scientific article

Effect of supplementation with an 80:20cis9,trans11 conjugated linoleic acid blend on the human platelet proteome

Exploratory Pathway Analysis ⬇️

PhD thesis of Thomas Kelder

Exploring pathway interactions in insulin resistant mouse liver

scientific article (publication date: 15 August 2011)

Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets

scientific article

Integrative network analysis reveals time-dependent molecular events underlying left ventricular remodeling in post-myocardial infarction patients

scientific article published on 3 February 2017

Mining biological pathways using WikiPathways web services

scientific article

Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters

scientific article

Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

scientific article

PathVisio 3: an extendable pathway analysis toolbox

scientific article

Presenting and exploring biological pathways with PathVisio

scientific article

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

scientific article (publication date: 4 January 2010)

The Importance of Modularity in Bioinformatics Tools

The Network Library: a framework to rapidly integrate network biology resources

scientific article

The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation

scientific article (publication date: 26 November 2008)

The emerging world of wikis

scientific article

Time-resolved and tissue-specific systems analysis of the pathogenesis of insulin resistance

scientific article

White adipose tissue reference network: a knowledge resource for exploring health-relevant relations

scientific article

WikiPathways: building research communities on biological pathways

scientific article (publication date: 2012)

WikiPathways: pathway editing for the people

Research paper from 2008 about the WikiPathways database.

cyNeo4j: connecting Neo4j and Cytoscape

scientific article published on 12 August 2015

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