List of works by Ivica Letunic

20 years of the SMART protein domain annotation resource

scientific article published on 10 October 2017

4DXpress: a database for cross-species expression pattern comparisons

scientific article published on 04 October 2007

A side effect resource to capture phenotypic effects of drugs

scientific article (publication date: 19 January 2010)

Alternative splicing and evolution ⬇️

scientific article published on November 1, 2003

Author Correction: Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

scientific article published on 21 December 2020

Common exon duplication in animals and its role in alternative splicing

scientific article

Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster

scientific article (publication date: 4 October 2002)

Consistency of genome-based methods in measuring Metazoan evolution

scientific article

Discovering functional novelty in metagenomes: examples from light-mediated processes

scientific article published on 10 October 2008

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

scientific article

Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages

scholarly article

Fast identification of folded human protein domains expressed in E. coli suitable for structural analysis

scientific article

Gene expression profiling of the rat superior olivary complex using serial analysis of gene expression

scientific article

Genome and protein evolution in eukaryotes

scientific article

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

article

INSIdE NANO: a systems biology framework to contextualize the mechanism-of-action of engineered nanomaterials

scientific article published in Scientific Reports

Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

scientific article published on 18 November 2020

Immunity-related genes and gene families in Anopheles gambiae

scientific article published in October 2002

Impact of genome reduction on bacterial metabolism and its regulation.

scientific article published in November 2009

Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism

Initial sequencing and comparative analysis of the mouse genome

scientific article

InterPro in 2011: new developments in the family and domain prediction database

scientific article

InterPro in 2011: new developments in the family and domain prediction database

scientific article published on 19 May 2012

InterPro in 2017-beyond protein family and domain annotations

scientific article

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

article by Alex Mitchell et al published 6 November 2018 in Nucleic Acids Research

InterPro, progress and status in 2005

scientific article

InterPro: an integrated documentation resource for protein families, domains and functional sites

scientific article

InterPro: the integrative protein signature database

scientific article

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

scientific article published on 01 July 2019

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

scientific article

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

scientific article

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

scientific article

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

scientific article

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes

scientific article published on 01 April 2022

Metagenomic analysis of gut microbial communities from a Central Asian population

article

Microbiome and metabolome features of the cardiometabolic disease spectrum

scientific article published on 17 February 2022

New developments in the InterPro database

scientific article

Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets

scientific article

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

scientific article published on 31 October 2014

PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins

scientific article

Protein domain analysis in the era of complete genomes

scientific article

Quantifying environmental adaptation of metabolic pathways in metagenomics

scientific article

Quantitative assessment of protein function prediction from metagenomics shotgun sequences

scientific article (publication date: 23 August 2007)

SMART 4.0: towards genomic data integration

scientific article (publication date: 2004)

SMART 5: domains in the context of genomes and networks

scientific article

SMART 6: recent updates and new developments

scientific article

SMART 7: recent updates to the protein domain annotation resource

scientific article

SMART: recent updates, new developments and status in 2015.

scientific article published on 9 October 2014

SMART: recent updates, new developments and status in 2020

scientific article published on 26 October 2020

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

scientific article

Statin therapy is associated with lower prevalence of gut microbiota dysbiosis

scientific article published on 06 May 2020

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

scientific article

The InterPro database, 2003 brings increased coverage and new features

scientific article (publication date: 2003)

The InterPro protein families and domains database: 20 years on

scientific article published on 06 November 2020

The InterPro protein families database: the classification resource after 15 years

scientific article

The SIDER database of drugs and side effects

scientific article (publication date: 19 October 2015)

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

scientific article

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data ⬇️

scientific article (publication date: 16 April 2014)

Towards the biogeography of prokaryotic genes

scientific article published in 2021

Visualization of multiple alignments, phylogenies and gene family evolution

scientific article published on March 2010

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

scientific article published on 01 January 2019

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

scientific article

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

scientific article

eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale

publication published on 01 December 2021

iPath2.0: interactive pathway explorer

scientific article published on 5 May 2011

iPath3.0: interactive pathways explorer v3.

scientific article published on 30 April 2018

iPath: interactive exploration of biochemical pathways and networks

scientific article

metaTIGER: a metabolic evolution resource

scientific article published on 25 October 2008

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes

scientific article published on 01 January 2020

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes

scientific article

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