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List of works by Manimozhiyan Arumugam

A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog

scientific article published on 19 October 2021

A catalog of the mouse gut metagenome

scientific article published on 28 September 2015

A human gut microbial gene catalogue established by metagenomic sequencing

scientific article

Amendments: Author Correction: A catalog of the mouse gut metagenome

scientific article published on 01 January 2019

An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples

scientific article

An integrated catalog of reference genes in the human gut microbiome

scientific article

Antifibrotic and molecular aspects of rifaximin in alcoholic liver disease: study protocol for a randomized controlled trial.

scientific article published on 26 February 2018

Assessment of metagenomic assembly using simulated next generation sequencing data

scientific article

Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 December 2019

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Bile microbiome varies by etiology of cholestatic liver disease

scientific article published on 03 September 2020

Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways

scientific article published on 03 July 2020

Circulating microbiome in blood of different circulatory compartments

article

Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions

scientific article

Compartmentalization of Immune Response and Microbial Translocation in Decompensated Cirrhosis

scientific article published on 08 February 2019

Complete Genome Sequences of emm111 Type Streptococcus pyogenes Strain GUR, with Antitumor Activity, and Its Derivative Strain GURSA1 with an Inactivated emm Gene

scientific article published on 21 September 2017

Consistent mutational paths predict eukaryotic thermostability

scientific article

Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

scientific article published in Nature

Country-specific antibiotic use practices impact the human gut resistome

scientific article published on 08 April 2013

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

scientific article published on 2 December 2015

Enterotypes in the landscape of gut microbial community composition.

scientific article published on 18 December 2017

Enterotypes of the human gut microbiome

scientific article

Enterotypes of the human gut microbiome

scientific article published in Nature

Erratum: Addendum: Enterotypes of the human gut microbiome

scientific article published in Nature

Genes controlling the activation of natural killer lymphocytes are epigenetically remodeled in intestinal cells from germ-free mice

article

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

scientific article

Genomic variation landscape of the human gut microbiome

scientific article

Gut microbiome development along the colorectal adenoma-carcinoma sequence

scientific article published on 11 March 2015

High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice

scientific article published on 08 April 2017

Human gut microbes impact host serum metabolome and insulin sensitivity

scientific article

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

scientific article published on 6 July 2014

Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing

scientific article published on April 2004

Implementations of the chemical structural and compositional similarity metric in R and Python

scientific article published on 11 February 2019

Individuality and temporal stability of the human gut microbiome.

scientific article published in January 2013

Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile

scientific article

Interplay between FGF21 and insulin action in the liver regulates metabolism

scientific article published on 09 January 2014

Interplay between FGF21 and insulin action in the liver regulates metabolism

scientific article

MOCAT: a metagenomics assembly and gene prediction toolkit

scientific article

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

scientific article published on 01 April 2019

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 April 2019

Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer

scientific article published on 25 September 2015

Metagenomic species profiling using universal phylogenetic marker genes

scientific article

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Molecular properties of adult mouse gastric and intestinal epithelial progenitors in their niches

scientific article published on 7 February 2006

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline

scientific article published on 7 August 2006

Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner

scientific article published on 04 May 2009

Publisher Correction: Enterotypes in the landscape of gut microbial community composition

scientific article published on 13 February 2018

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Recovery of gut microbiota of healthy adults following antibiotic exposure

scientific article published on 22 October 2018

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Richness of human gut microbiome correlates with metabolic markers

scientific article (publication date: 29 August 2013)

Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota

scientific article

SmashCell: a software framework for the analysis of single-cell amplified genome sequences

scientific article

SmashCommunity: a metagenomic annotation and analysis tool

scientific article

The Treeterbi and Parallel Treeterbi algorithms: efficient, optimal decoding for ordinary, generalized and pair HMMs

scientific article published on 18 January 2007

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

scientific article

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India

scientific article published on 03 March 2021

Transcriptome Complexity in a Genome-Reduced Bacterium

scientific article

Trust is good, control is better: technical considerations in blood microbiome analysis

scientific article published on 15 June 2019

Utilizing the gut microbiome in decompensated cirrhosis and acute-on-chronic liver failure

scientific article published on 30 November 2020

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