List of works - Cédric Feschotte

A Field Guide to Eukaryotic Transposable Elements

scientific article published on 21 September 2020

A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors

scientific article published on 27 May 2020

A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors

scientific article published on 03 September 2020

A call for benchmarking transposable element annotation methods

scientific article published on 4 August 2015

A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements

scientific article

A cornucopia of Helitrons shapes the maize genome

scientific article

A resurrected mammalian hAT transposable element and a closely related insect element are highly active in human cell culture

scientific article published on 22 October 2012

A role for host-parasite interactions in the horizontal transfer of transposons across phyla

scientific article

A single-cell RNA expression map of human coronavirus entry factors

scientific article published on 09 May 2020

A study of the repetitive structure and distribution of short motifs in human genomic sequences

scientific article published in January 2007

An Ac -like Transposable Element Family With Transcriptionally Active Y-Linked Copies in the White Campion, Silene latifolia ⬇️

scientific article published on October 1, 2003

An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes

scientific article

Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

article

Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy.

scientific article published on 29 January 2015

Birth of a chimeric primate gene by capture of the transposase gene from a mobile element

scientific article

Co-option of endogenous viral sequences for host cell function

scientific article

Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila

scientific article published on January 2007

Contribution of unfixed transposable element insertions to human regulatory variation

scientific article published on 10 February 2020

Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals

scientific article (publication date: 2008)

Correction to 'Contribution of unfixed transposable element insertions to human regulatory variation'

scientific article published on 21 September 2020

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail

scientific article published on 23 August 2017

Cross-Species Transmission and Differential Fate of an Endogenous Retrovirus in Three Mammal Lineages

scientific article

DNA transposons have colonized the genome of the giant virus Pandoravirus salinus

scientific article

DNA-binding specificity of rice mariner-like transposases and interactions with Stowaway MITEs

scientific article

Discovery of highly divergent repeat landscapes in snake genomes using high-throughput sequencing

scientific article (publication date: 2011)

Dynamics of genome size evolution in birds and mammals

scientific article published on 08 February 2017

Dynamics of transposable elements: towards a community ecology of the genome

scientific article

Ecological networks to unravel the routes to horizontal transposon transfers

scientific article published on 15 February 2017

Endogenous viral elements: evolution and impact

scientific article published on 01 June 2016

Endogenous viruses: insights into viral evolution and impact on host biology

scientific article (publication date: 16 March 2012)

Evolution of mouse circadian enhancers from transposable elements

scientific article published on 29 June 2021

Evolution. Transposons up the dosage.

scientific article published in November 2013

Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes

scientific article published on 10 May 2016

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

scientific article

Faculty of 1000 evaluation for Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

Faculty of 1000 evaluation for The evolution of lncRNA repertoires and expression patterns in tetrapods

article published in 2014

Fighting fire with fire: endogenous retrovirus envelopes as restriction factors

scientific article

First international workshop on human endogenous retroviruses and diseases, HERVs & disease 2015

scientific article

Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon

scientific article (publication date: 2 January 2013)

Genome-Wide Characterization of Endogenous Retroviruses in the Bat Myotis lucifugus Reveals Recent and Diverse Infections ⬇️

scientific article (publication date: August 2013)

Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs)

scientific article (publication date: February 2003)

Genomic DNA transposition induced by human PGBD5

scientific article

Genomic fossils calibrate the long-term evolution of hepadnaviruses

scientific article

Genomic impact of eukaryotic transposable elements

scientific article published on 21 November 2012

Genomic landscape of human, bat, and ex vivo DNA transposon integrations

scientific article

Genomics of ecological adaptation in cactophilic Drosophila.

scientific article

Horizontal SPINning of transposons

scientific article published on January 2009

Horizontal acquisition of transposable elements and viral sequences: patterns and consequences

scientific article published on 2 March 2018

Horizontal transfer of OC1 transposons in the Tasmanian devil ⬇️

scientific article (publication date: 27 February 2013)

Host-transposon interactions: conflict, cooperation, and cooption

scientific article published on 01 September 2019

Human Endogenous Retrovirus K Rec forms a Regulatory Loop with MITF that Opposes the Progression of Melanoma to an Invasive Stage

scientific article published on 13 November 2020

LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders

scientific article (publication date: 2012)

Mariner -like transposases are widespread and diverse in flowering plants ⬇️

scientific article published on December 26, 2001

Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus

scholarly article

Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses

scientific article

Meeting report for mobile DNA 2010

scientific article

Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences

scientific article published on 9 June 2004

Mobile DNA: genomes under the influence

scientific article published on January 2006

Mobile elements jump between parasites and vertebrate hosts

scientific article published in December 2010

Mobile genetic elements and genome evolution 2014

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

scientific article (publication date: May 2008)

Non-mammalian c-integrases are encoded by giant transposable elements.

scientific article

On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain ⬇️

scientific article (publication date: September 2012)

PIF- and Pong-like transposable elements: distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements

scientific article

PIF-like transposons are common in drosophila and have been repeatedly domesticated to generate new host genes

scientific article published on 7 June 2007

Parallel Germline Infiltration of a Lentivirus in Two Malagasy Lemurs

scientific article

Plant transposable elements: where genetics meets genomics

scientific article

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

scientific article (publication date: September 2010)

RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena

scientific article published on 26 February 2019

Rampant horizontal transfer of SPIN transposons in squamate reptiles

scientific article (publication date: February 2012)

Recurrent horizontal transfers of Chapaev transposons in diverse invertebrate and vertebrate animals

scientific article

Regulatory activities of transposable elements: from conflicts to benefits

scientific article

Regulatory evolution of innate immunity through co-option of endogenous retroviruses ⬇️

scientific article

Repair-mediated duplication by capture of proximal chromosomal DNA has shaped vertebrate genome evolution

scientific article published on 08 May 2009

RepeatModeler2 for automated genomic discovery of transposable element families

scientific article published on 16 April 2020

Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods

scientific article (publication date: 4 November 2008)

Review of Mobile DNA - finding treasure in junk by Haig H Kazazian.

scientific article published on 3 October 2012

Reviewer acknowledgement 2014.

scientific article published on 25 February 2014

Reviewer acknowledgement 2015

Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics

scientific article

Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes

scientific article published on 28 July 2011

Spy: a new group of eukaryotic DNA transposons without target site duplications

scientific article

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

scientific article

Structures of virus-like capsids formed by the Drosophila neuronal Arc proteins

scientific article published on 06 January 2020

Ten things you should know about transposable elements

scientific article published on 19 November 2018

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

scientific article

The Neuronal Gene Arc Encodes a Repurposed Retrotransposon Gag Protein that Mediates Intercellular RNA Transfer

scientific article published in January 2018

The Neuronal Gene Arc Encodes a Repurposed Retrotransposon Gag Protein that Mediates Intercellular RNA Transfer.

scientific article published in March 2018

The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage

scientific article (publication date: April 2007)

The hidden elasticity of avian and mammalian genomes

The piggyBac transposon holds promise for human gene therapy

scholarly article

Transposable Element Domestication As an Adaptation to Evolutionary Conflicts

scientific article

Transposable elements and the evolution of regulatory networks

scientific article (publication date: May 2008)

Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs

scientific article

Transposase-derived transcription factors regulate light signaling in Arabidopsis

scientific article

Transposons take remote control

scientific article published on 26 September 2018

Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE.

scientific article

TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data

scientific article published on 01 April 2020

Unexpected diversity and differential success of DNA transposons in four species of entamoeba protozoans.

scientific article

Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs).

scientific article published on April 2004

Variation in proviral content among human genomes mediated by LTR recombination

scholarly article by Jainy Thomas published in January 2018

Virology: Bornavirus enters the genome

scientific article (publication date: 7 January 2010)

Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications

scientific article

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

scientific article published on 16 May 2017

List of works by Cédric Feschotte

A Field Guide to Eukaryotic Transposable Elements

A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors

A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors

A call for benchmarking transposable element annotation methods

A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements

A cornucopia of Helitrons shapes the maize genome

A resurrected mammalian hAT transposable element and a closely related insect element are highly active in human cell culture

A role for host-parasite interactions in the horizontal transfer of transposons across phyla

A single-cell RNA expression map of human coronavirus entry factors

A study of the repetitive structure and distribution of short motifs in human genomic sequences

An Ac -like Transposable Element Family With Transcriptionally Active Y-Linked Copies in the White Campion, Silene latifolia ⬇️

An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes

Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy.

Birth of a chimeric primate gene by capture of the transposase gene from a mobile element

Co-option of endogenous viral sequences for host cell function

Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila

Contribution of unfixed transposable element insertions to human regulatory variation

Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals

Correction to 'Contribution of unfixed transposable element insertions to human regulatory variation'

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail

Cross-Species Transmission and Differential Fate of an Endogenous Retrovirus in Three Mammal Lineages

DNA transposons have colonized the genome of the giant virus Pandoravirus salinus

DNA-binding specificity of rice mariner-like transposases and interactions with Stowaway MITEs

Discovery of highly divergent repeat landscapes in snake genomes using high-throughput sequencing

Dynamics of genome size evolution in birds and mammals

Dynamics of transposable elements: towards a community ecology of the genome

Ecological networks to unravel the routes to horizontal transposon transfers

Endogenous viral elements: evolution and impact

Endogenous viruses: insights into viral evolution and impact on host biology

Evolution of mouse circadian enhancers from transposable elements

Evolution. Transposons up the dosage.

Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

Faculty of 1000 evaluation for Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

Faculty of 1000 evaluation for The evolution of lncRNA repertoires and expression patterns in tetrapods

Fighting fire with fire: endogenous retrovirus envelopes as restriction factors

First international workshop on human endogenous retroviruses and diseases, HERVs & disease 2015

Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon

Genome-Wide Characterization of Endogenous Retroviruses in the Bat Myotis lucifugus Reveals Recent and Diverse Infections ⬇️

Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs)

Genomic DNA transposition induced by human PGBD5

Genomic fossils calibrate the long-term evolution of hepadnaviruses

Genomic impact of eukaryotic transposable elements

Genomic landscape of human, bat, and ex vivo DNA transposon integrations

Genomics of ecological adaptation in cactophilic Drosophila.

Horizontal SPINning of transposons

Horizontal acquisition of transposable elements and viral sequences: patterns and consequences

Horizontal transfer of OC1 transposons in the Tasmanian devil ⬇️

Host-transposon interactions: conflict, cooperation, and cooption

Human Endogenous Retrovirus K Rec forms a Regulatory Loop with MITF that Opposes the Progression of Melanoma to an Invasive Stage

LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders

Mariner -like transposases are widespread and diverse in flowering plants ⬇️

Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus

Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses

Meeting report for mobile DNA 2010

Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences

Mobile DNA: genomes under the influence

Mobile elements jump between parasites and vertebrate hosts

Mobile genetic elements and genome evolution 2014

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

Non-mammalian c-integrases are encoded by giant transposable elements.

On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain ⬇️

PIF- and Pong-like transposable elements: distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements

PIF-like transposons are common in drosophila and have been repeatedly domesticated to generate new host genes

Parallel Germline Infiltration of a Lentivirus in Two Malagasy Lemurs

Plant transposable elements: where genetics meets genomics

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena

Rampant horizontal transfer of SPIN transposons in squamate reptiles

Recurrent horizontal transfers of Chapaev transposons in diverse invertebrate and vertebrate animals

Regulatory activities of transposable elements: from conflicts to benefits

Regulatory evolution of innate immunity through co-option of endogenous retroviruses ⬇️

Repair-mediated duplication by capture of proximal chromosomal DNA has shaped vertebrate genome evolution

RepeatModeler2 for automated genomic discovery of transposable element families

Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods

Review of Mobile DNA - finding treasure in junk by Haig H Kazazian.

Reviewer acknowledgement 2014.

Reviewer acknowledgement 2015