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List of works by Pamela S. Soltis

'Living stones' reveal alternative petal identity programs within the core eudicots

scientific article published on 23 November 2011

10KP: A phylodiverse genome sequencing plan.

scientific article

250 years of hybridization between two biennial herb species without speciation ⬇️

scientific article

<i>Tragopogon dubius</i>: Multiple introductions to North America and the formation of the New World tetraploids

scientific article published in 2022

<i>Tragopogon pratensis</i>: Multiple introductions to North America, circumscription, and the formation of the allotetraploid <i>T. miscellus</i>

scientific article published in 2023

A 567‐Taxon Data Set for Angiosperms: The Challenges Posed by Bayesian Analyses of Large Data Sets

article

A Computational- and Storage-Cloud for Integration of Biodiversity Collections

A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids

scientific article published on 13 September 2018

A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering.

scientific article published in July 2019

A case of mistaken identity, Opuntia abjecta, long-lost in synonymy under the Caribbean species, O. triacantha, and a reassessment of the enigmatic O. cubensis ⬇️

scientific article published in 2013

A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways

article

A conifer genome spruces up plant phylogenomics

scientific article published on 27 June 2013

A cryptic taxon rather than a hybrid species of Tragopogon (Asteraceae) from the Czech Republic ⬇️

scholarly article by Evgeny V. Mavrodiev et al published 2 February 2013 in Kew Bulletin

A genome triplication associated with early diversification of the core eudicots

scientific article (publication date: 26 January 2012)

A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins ⬇️

scientific article published in 2023

A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes

scientific article

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

scientific article

A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes

scientific article

A two-tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae

scientific article published on 09 May 2020

Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering

scientific article published on 14 December 2017

Advances in plant imaging across scales

scientific article published in 2023

Advances in the study of polyploidy since Plant speciation

article

Allozymic Differentiation Between Clarkia nitens and C. speciosa (Onagraceae)

scientific article published in 1991

Allozymic Divergence in North American Polystichum (Dryopteridaceae)

scientific article published in 1990

Allozymic and Chloroplast DNA Analyses of Polyploidy in Polystichum (Dryopteridaceae). I. The Origins of P. californicum and P. scopulinum

scientific article published in 1991

Amborella not a “basal angiosperm”? Not so fast ⬇️

scientific article published on June 1, 2004

An Exploration into Fern Genome Space.

scientific article published on 26 August 2015

An assessment of karyotype restructuring in the neoallotetraploid Tragopogon miscellus (Asteraceae) ⬇️

scientific article published on February 21, 2013

An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): characterization and microsatellite markers

scientific article

Anatomy of a mega‐radiation: Biogeography and niche evolution in <i>Astragalus</i>

scientific article published on 28 February 2024

Ancestral polyploidy in seed plants and angiosperms

scientific article (publication date: 5 May 2011)

Anchored Phylogenomics of Angiosperms I: Assessing the Robustness of Phylogenetic Estimates

article

Ancient DNA: Prospects and limitations

scientific article published in 1993

Ancient WGD events as drivers of key innovations in angiosperms

scientific article

Ancient and recent polyploidy in angiosperms

scientific article published in April 2005

Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data

scholarly article by Vitor Hugo Maia et al published July 2014 in International Journal of Plant Sciences

Angiosperm Phylogeny Inferred From 18S Ribosomal Dna Sequences

scientific article

Angiosperm Phylogeny: A Framework for Studies of Genome Evolution

scholarly article published 23 August 2012

Angiosperm phylogeny based on matK sequence information

scientific article published in December 2003

Angiosperm phylogeny: 17 genes, 640 taxa

scientific article

Another look at the root of the angiosperms reveals a familiar tale

scientific article

Anthocyanin Content in Diploid and Tetraploid Cytotypes of Tolmiea menziesii (Saxifragaceae)

scientific article published in 1986

Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidy

scientific article published on 11 September 2018

Are microsatellite fragment lengths useful for population-level studies? The case of Polygala lewtonii (Polygalaceae).

scientific article

Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayrose et al. ()

scientific article published on 22 April 2014

Areas of endemism in the Nearctic: a case study of 1339 species of Miridae (Insecta: Hemiptera) and their plant hosts

article

Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1

scholarly article by Thomas J. Givnish et al published 27 December 2010 in Annals of the Missouri Botanical Garden

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella

scientific article published in December 2013

Autopolyploidy in Angiosperms: Have We Grossly Underestimated the Number of Species?

scientific article published on February 2007

Basal Lineages Of Angiosperms: Relationships And Implications For Floral Evolution

scientific article

Between two fern genomes

scientific article

Biodiversity Science and the Twenty-First Century Workforce

scientific article published on 18 December 2019

Biodiversity and productivity in eastern US forests

scientific article published on 25 March 2024

Biodiversity synthesis across the green branches of the tree of life

scientific article published on 31 December 2018

Biogeography and ecological niche evolution in Diapensiaceae inferred from phylogenetic analysis ⬇️

scientific article published on 17 July 2020

Biogeography of Nymphaeales: Extant Patterns and Historical Events

scientific article published on November 2008

Biosystematic relationships and the formation of polyploids

scientific article published on April 2011

Bridging the Research Gap between Live Collections in Zoos and Preserved Collections in Natural History Museums

scientific article published on 24 February 2022

Build international biorepository capacity

scientific article published on 01 November 2020

Building a feral future: Open questions in crop ferality

scientific article published in 2023

Building an inclusive botany: The “radicle” dream

article published in January 2024

Buxus and Tetracentron genomes help resolve eudicot genome history

scientific article published on 02 February 2022

CHLOROPLAST-DNA AND ALLOZYMIC VARIATION IN DIPLOID AND AUTOTETRAPLOID HEUCHERA GROSSULARIIFOLIA (SAXIFRAGACEAE)

scientific article published on 01 February 1990

CHLOROPLAST-DNA VARIATION AND MULTIPLE ORIGINS OF AUTOPOLYPLOIDY IN HEUCHERA MICRANTHA (SAXIFRAGACEAE)

scientific article published on 01 May 1989

Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids

scientific article published on 01 March 2018

Character evolution and missing (morphological) data across Asteridae

scientific article published on 14 April 2018

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

scientific article

Characterization of polymorphic microsatellite loci in Haageocereus (Trichocereeae, Cactaceae)

scientific article published on 19 February 2010

Chloranthus genome provides insights into the early diversification of angiosperms

scientific article published on 26 November 2021

Chloroplast DNA Evidence for the Origins of the Monotypic Bensoniella and Conimitella (Saxifragaceae)

scientific article published in 1990

Chloroplast DNA Variation in Lithophragma (Saxifragaceae)

scientific article published in 1992

Climate change, collections and the classroom: using big data to tackle big problems

Climatic niche comparison among ploidal levels in the classic autopolyploid system, Galax urceolata

scientific article published on 21 September 2018

Climatic niche comparisons of eastern North American and eastern Asian disjunct plant genera

scientific article published in 2022

Comparative phylogeographic analyses illustrate the complex evolutionary history of threatened cloud forests of northern Mesoamerica.

scientific article

Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in Florida: Testing the maritime discontinuity in coastal plants

scientific article

Comparative phylogeography of unglaciated eastern North America

scientific article

Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents ⬇️

scientific article published on 03 August 2012

Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae).

scientific article

Comparison of next generation sequencing technologies for transcriptome characterization

scientific article

Complete plastid genome sequencing of Trochodendraceae reveals a significant expansion of the inverted repeat and suggests a Paleogene divergence between the two extant species

scientific article (publication date: 2013)

Complex pigment evolution in the Caryophyllales

scientific article published on June 2011

Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression

scientific article

Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower

scientific article (publication date: 28 December 2010)

Considerations in adapting CRISPR/Cas9 in nongenetic model plant systems

scientific article published on 12 January 2020

Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology

scientific article published on August 2014

Corrigendum: Three keys to the radiation of angiosperms into freezing environments

scientific article published in Nature

Corrigendum: Three keys to the radiation of angiosperms into freezing environments

scholarly article published in Nature

Cytogeography of Callisia section Cuthbertia (Commelinaceae).

scientific article published in September 2017

Cytogeography of the Humifusa clade of Opuntia s.s. Mill. 1754 (Cactaceae, Opuntioideae, Opuntieae): correlations with pleistocene refugia and morphological traits in a polyploid complex

scientific article

Cytonuclear Coordination Is Not Immediate upon Allopolyploid Formation in Tragopogon miscellus (Asteraceae) Allopolyploids

scientific article published on 8 December 2015

DEF- and GLO-like proteins may have lost most of their interaction partners during angiosperm evolution

scientific article

DNA sequences from Miocene fossils: an ndhF sequence of Magnolia latahensis (Magnoliaceae) and an rbcL sequence of Persea pseudocarolinensis (Lauraceae) ⬇️

scientific article published on April 1, 2004

Darwin review: angiosperm phylogeny and evolutionary radiations

article

Darwin's abominable mystery: Insights from a supertree of the angiosperms

scientific article

Darwinian genomics and diversity in the tree of life

scientific article published on 18 January 2022

Data Attribution from Download to Publication

scientific article published in 2018

Data access for the 1,000 Plants (1KP) project

scientific article

Deep phylogenetic incongruence in the angiosperm clade Rosidae

scientific article

Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae).

scientific article

Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome

scientific article

Development of Multilocus PCR Assays for Raffaelea lauricola, Causal Agent of Laurel Wilt Disease

scientific article published on 01 March 2014

Digitization of Biodiversity Collections Reveals Biggest Data on Biodiversity

scientific article

Digitization of herbaria enables novel research

scientific article published on 01 September 2017

Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants.

scientific article

Digitization workflows for flat sheets and packets of plants, algae, and fungi ⬇️

scientific article published on 10 September 2015

Divergence Times and Historical Biogeography of Nymphaeales

scholarly article by Mi-Jeong Yoo et al published 1 October 2005 in Systematic Botany

Divergent gene expression levels between diploid and autotetraploid Tolmiea relative to the total transcriptome, the cell, and biomass

scientific article published on 19 February 2019

Do global diversity patterns of vertebrates reflect those of monocots?

scientific article

Does hybridization between divergent progenitors drive whole-genome duplication?

scientific article published on 14 July 2009

Doubling down on polyploidy

scientific article published in 2023

Dynamics of polyploid formation in Tragopogon (Asteraceae): recurrent formation, gene flow, and population structure

scientific article

Earth BioGenome Project: Sequencing life for the future of life

scientific article published on 23 April 2018

Editorial overview: Genomes and evolution: "Seq-ing" answers in life's genomes

scientific article published on 9 December 2015

Editorial: Recent advances in museomics: revolutionizing biodiversity research

scientific article published in 2023

Effects of taxon sampling and tree reconstruction methods on phylodiversity metrics

scientific article published on 21 August 2019

Electrophoretic Evidence for Interspecific Hybridization in Polystichum

article

Electrophoretic and Morphological Confirmation of Interspecific Hybridization between Polystichum kruckebergii and P. munitum

Endemism, projected climate change, and identifying species of critical concern in the Scrub Mint clade (Lamiaceae)

scientific article published in 2022

Erratum: The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

scientific article published in Nature

Estimates of Intragametophytic Selfing and Interpopulational Gene Flow in Homosporous Ferns

scientific article published in 1988

Estimating rates and patterns of diversification with incomplete sampling: a case study in the rosids

scientific article published on 09 June 2020

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

scientific article

Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid

scientific article

Evolution of Inbreeding and Outcrossing in Ferns and Fern-Allies

scientific article published on 03 February 2005

Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land

article

Evolution of floral diversity: genomics, genes and gamma

scientific article

Evolution of floral traits and impact of reproductive mode on diversification in the phlox family (Polemoniaceae)

scientific article published on 27 June 2018

Evolution of genome size in the angiosperms

scientific article

Evolution of rapid blue-light response linked to explosive diversification of ferns in Angiosperm forests

scientific article published on 06 December 2020

Evolutionary Conservation of ABA Signaling for Stomatal Closure.

scientific article

Evolutionary Patterns and Processes in Salix Sect. Longifoliae: Evidence from Chloroplast DNA

scientific article published in 1992

Evolutionary Patterns in Apiaceae: Inferences Based on matK Sequence Data

article

Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci

scientific article

Evolutionary biology for the 21st century

scientific article

Evolutionary genetics of genome merger and doubling in plants

scientific article published on January 2008

Evolutionary history of the Arctic flora

scientific article published in 2023

Evolutionary history of the angiosperm flora of China

scientific article published on 31 January 2018

Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum

scientific article published in 2018

Evolutionary trends in the floral transcriptome: insights from one of the basalmost angiosperms, the water lily Nuphar advena (Nymphaeaceae).

scientific article published on 8 October 2010

Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era.

scientific article

Examination of Reticulate Evolution Involving Haageocereus and Espostoa

scientific article published in 2021

Exploring Diversification and Genome Size Evolution in Extant Gymnosperms through Phylogenetic Synthesis

article

Expression of floral MADS-box genes in basal angiosperms: implications for the evolution of floral regulators

scientific article published in September 2005

Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae).

scientific article published on 6 January 2012

Floral Developmental Morphology of Amborella trichopoda (Amborellaceae)

article

Floral gene resources from basal angiosperms for comparative genomics research

scientific article

Floral variation and floral genetics in basal angiosperms

scientific article

Flower diversity and angiosperm diversification

scientific article

For common community phylogenetic analyses, go ahead and use synthesis phylogenies

scientific article published on 09 July 2019

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

scientific article (publication date: 17 February 2014)

GENETIC CONSEQUENCES OF AUTOPOLYPLOIDY IN TOLMIEA (SAXIFRAGACEAE)

scientific article published on 01 May 1989

GENETIC DIVERSITY IN RARE AND WIDESPREAD SPECIES OF LOMATIUM (APIACEAE)

scientific article published in 1997

GENETIC UNIFORMITY OF EL ARBOL DEL TULE (THE TULE TREE)

scientific article published in 1990

Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms

scientific article published on 19 July 2021

Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms

scientific article published in 2021

Gene silencing via DNA methylation in naturally occurring Tragopogon miscellus (Asteraceae) allopolyploids

scientific article

Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana

scientific article published on 01 September 2020

Generic classification of Amaryllidaceae tribe Hippeastreae

scientific article

Genetic Evidence for Allopolyploidy in the Neotropical Fern Hemionitis pinnatifida (Adiantaceae) and the Reconstruction of an Ancestral Genome

scientific article published in 1989

Genetic Variation in Helianthus annuus and H. bolanderi

scientific article published in 1988

Genetic and Cytological Investigations in Sexual Erigeron compositus (Asteraceae)

scientific article published in 1995

Genetic insights into the evolution of genera with the eastern Asia-eastern North America floristic disjunction: a transcriptomics analysis

scientific article published on 06 December 2020

Genetic relationships and polyploid origins in the Lippia alba complex

scientific article published on 01 March 2020

Genetic variability of an unusual apomictic triploid cactus--Haageocereus tenuis Ritter--from the Coast of Central Peru

scientific article published in October 2012

Genetic variation in <i>Bromus tectorum</i> (Poaceae): introduction dynamics in North America

scientific article published in 1993

Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics

scientific article

Genome‐wide <scp>DNA</scp> methylation dynamics following recent polyploidy in the allotetraploid <i>Tragopogon miscellus</i> (Asteraceae)

scientific article published on 7 March 2024

Geographic And Taxonomic Occurrence R‐based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data

scientific article published in March 2024

Geographic Divergence in Leptodactylon californicum (Polemoniaceae): Insights from Morphology, Enzyme Electrophoresis, and Restriction Site Analysis of rDNA

scientific article published in 2001

Geographic Range Dynamics Drove Ancient Hybridization in a Lineage of Angiosperms

article

Global versus Chinese perspectives on the phylogeny of the N-fixing clade

article

Green digitization: Online botanical collections data answering real‐world questions.

scientific article

Green plant genomes: What we know in an era of rapidly expanding opportunities

scientific article published on 18 January 2022

Gunnerales are sister to other core eudicots: implications for the evolution of pentamery

scientific article published in March 2003

Habitat Shape Affects Polyploid Establishment in a Spatial, Stochastic Model

scientific article published on 16 November 2020

Herbarium data: Global biodiversity and societal botanical needs for novel research.

scientific article

Higher Level Relationships of Apiales (Apiaceae and Araliaceae) Based on Phylogenetic Analysis of rbcL Sequences

scholarly article by Gregory M. Plunkett et al published April 1996 in American Journal of Botany

High‐throughput methods for efficiently building massive phylogenies from natural history collections

scientific article published on 27 February 2021

Hindcast‐validated species distribution models reveal future vulnerabilities of mangroves and salt marsh species

scientific article published in 2022

Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae)

scientific article (publication date: 8 February 2010)

Hybridization, speciation and novelty ⬇️

scientific article published on February 1, 2013

ITS and ETS Sequence Data and Phylogeny Reconstruction in Allopolyploids and Hybrids

scientific article

Identifying Climatic Drivers of Hybridization with a New Ancestral Niche Reconstruction Method

scientific article published in 2023

Idiosyncratic responses of evergreen broad-leaved forest constituents in China to the late Quaternary climate changes

scientific article

Impact of whole-genome duplication events on diversification rates in angiosperms

scientific article published on 01 March 2018

Impacts of Nitrogen and Phosphorus: From Genomes to Natural Ecosystems and Agriculture

scientific article published in 2017

Informal multimedia biodiversity awareness event as a digital ecology for promoting culture of science

scientific article published in 2020

Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome

scientific article published on 02 September 2021

Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family

scientific article

Integrating Biodiversity Infrastructure into Pathogen Discovery and Mitigation of Emerging Infectious Diseases

scientific article published on 24 June 2020

Intergeneric Hybridization between Conimitella williamsii and Mitella stauropetala (Saxifragaceae)

scientific article published in 1986

Interpopulation hybridization generates meiotically stable rDNA epigenetic variants in allotetraploid Tragopogon mirus

scientific article published on 29 December 2015

Intraspecific Phylogeny Analysis Using ITS Sequences: Insights from Studies of the Streptanthus glandulosus Complex (Cruciferae)

scholarly article by Michael S. Mayer et al published January 1999 in Systematic Botany

Introduction

scientific article published on 26 February 2019

Isolation and characterization of novel microsatellite markers for Arctium minus (Compositae).

scientific article

Isozyme Evidence for Ancient Polyploidy in Primitive Angiosperms

scientific article published in 1990

Isozymes in Plant Biology.

scientific article published in 1991

Karyotypic variation and pollen stainability in resynthesized allopolyploids Tragopogon miscellus and T. mirus

scientific article published on 01 October 2017

Keep the DNA Rolling: Multiple Displacement Amplification of Archival Plant DNA Extracts

scientific article published on August 2008

Linking Heterogeneous Data in Biodiversity Research

scientific article published in 2017

Linking genome signatures of selection and adaptation in non-model plants: exploring potential and limitations in the angiosperm Amborella

scientific article

Linnaeus lives on

scientific article published in Nature

Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research

scientific article published on 13 May 2020

MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes

scientific article

Menispermaceae and the diversification of tropical rainforests near the Cretaceous-Paleogene boundary

scientific article

Microsatellite marker development for Galax urceolata (Diapensiaceae) ⬇️

scientific article published on February 25, 2011

Microsatellite marker development for the federally listed Prunus geniculata (Rosaceae)

scientific article published on 25 February 2011

Missing links: the genetic architecture of flowers [correction of flower] and floral diversification

scientific article

Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity

scientific article published on 24 December 2016

Molecular Markers and Concepts of Plant Evolutionary Relationships: Progress, Promise, and Future Prospects

scientific article published on 27 February 2009

Molecular Phylogenetic Analysis of the Hawaiian Endemics Schiedea and Alsinidendron (Caryophyllaceae)

scientific article published in July 1996

Molecular Phylogeny of Conradina and Other Scrub Mints (Lamiaceae) from the Southeastern USA: Evidence for Hybridization in Pleistocene Refugia?

scientific article published in January 2006

Molecular Phylogeny of the Tree‐of‐Heaven Family (Simaroubaceae) Based on Chloroplast and Nuclear Markers

scholarly article by Joshua W. Clayton et al published November 2007 in International Journal of Plant Sciences

Molecular Systematics of Plants

scientific article (publication date: August 1992)

Molecular Systematics of Plants

article

Molecular Systematics: Assembling and Using the Tree of Life

scientific article (publication date: August 2001)

Molecular cytogenetic analysis of recently evolved Tragopogon (Asteraceae) allopolyploids reveal a karyotype that is additive of the diploid progenitors.

scientific article

Molecular data place Hydnoraceae with Aristolochiaceae ⬇️

scientific article (publication date: November 2002)

Molecular evidence for polyploid origins in Saxifraga (Saxifragaceae): the narrow arctic endemic S. svalbardensis and its widespread allies ⬇️

scientific article published on January 1, 1998

Molecular phylogeny, biogeography, and systematics of Dicerandra (Lamiaceae), a genus endemic to the southeastern United States

scientific article

Molecular systematics of Caryopteris (Lamiaceae) and its allies with reference to the molecular phylogeny of subfamily Ajugoideae

scholarly article by Chun-Lei Xiang et al published 9 May 2018 in Taxon

Monographs as a nexus for building extended specimen networks using persistent identifiers

scientific article published on 27 January 2022

Monophyly and Generic Relationships of Polemoniaceae Based on matK Sequences

scientific article published in 1996

Monophyly and Relationships of the Enigmatic Family Peridiscaceae

scientific article published on February 2007

Multiple Origins of the Allotetraploid Tragopogon mirus (Compositae): rDNA Evidence

scientific article published in 1991

Multiple origins and chromosomal novelty in the allotetraploid Tragopogon castellanus (Asteraceae).

scientific article published on 3 January 2015

Natural History Collections as Emerging Resources for Innovative Education

Natural hybrids between Tragopogon mirus and T. miscellus (Asteraceae): a new perspective on karyotypic changes following hybridization at the polyploid level

scientific article

Natural selection and repeated patterns of molecular evolution following allopatric divergence

scientific article published on 02 August 2019

Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications

scientific article published on 4 June 2015

New prospects in the detection and comparative analysis of hybridization in the tree of life

scientific article published on 14 February 2018

Next-generation sequencing and genome evolution in allopolyploids.

scientific article published on 20 January 2012

Niche divergence between diploid and autotetraploid Tolmiea

scientific article

Noise does not equal bias in assessing the evolutionary history of the angiosperm flora of China: A response to Qian (2019)

scientific article published on 28 September 2020

Nonadditive gene expression in polyploids

scientific article

Northern hemisphere biogeography of Cerastium (Caryophyllaceae): insights from phylogenetic analysis of noncoding plastidnucleotide sequences

scientific article

Nuclear genomes of two magnoliids

scientific article published on 01 January 2019

Nuclear phylogenomic analyses of asterids conflict with plastome trees and support novel relationships among major lineages

scientific article published on 13 May 2020

Nymphaeales—the First Globally Diverse Clade?

scientific article published on November 2008

Old Plants, New Tricks: Phenological Research Using Herbarium Specimens

scientific article (publication date: 29 April 2017)

On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae)

scientific article published on 27 June 2009

Optical sectioning and 3D reconstructions as an alternative to scanning electron microscopy for analysis of cell shape

scientific article published on 3 April 2015

Origin and early evolution of angiosperms

scientific article

Origin of angiosperms and the puzzle of the Jurassic gap

scientific article published on 06 May 2019

Out of the Water: Origin and Diversification of the LBD Gene Family

scientific article published on 2 April 2015

PHOSPHOGLUCOMUTASE GENE DUPLICATIONS IN CLARKIA (ONAGRACEAE) AND THEIR PHYLOGENETIC IMPLICATIONS.

scientific article

POLYPLOIDY AND SEGREGATION ANALYSES IN DELPHINIUM GYPSOPHILUM (RANUNCULACEAE)

scientific article published in 2001

POPULATION STRUCTURE AND ESTIMATES OF GENE FLOW IN THE HOMOSPOROUS FERN POLYSTICHUM MUNITUM

scientific article published on 01 May 1987

PUTATIVE MORPHOLOGICAL SYNAPOMORPHIES OF SAXIFRAGALES AND THEIR MAJOR SUBCLADES

scientific article published in 2011

Pandemic Policy in the Vaccine Era: The Long Haul Approach

scientific article published on 14 May 2021

Parental genomic compatibility model: only certain diploid genotype combinations form allopolyploids

scientific article published on 13 November 2023

Patterns of Embryological and Biochemical Evolution in the Asterids

scientific article published in 2001

Patterns of abiotic niche shifts in allopolyploids relative to their progenitors

scientific article

Persea americana (avocado): bringing ancient flowers to fruit in the genomics era.

scientific article published in April 2008

Phosphoglucomutase Gene Duplications in Clarkia (Onagraceae) and Their Phylogenetic Implications

article

Phylogenetic Analyses of Basal Angiosperms Based on Nine Plastid, Mitochondrial, and Nuclear Genes

article

Phylogenetic Analysis Of Asterids Based On Sequences Of Four Genes

scientific article

Phylogenetic Placement of the Enigmatic Angiosperm Hydrostachys

scientific article (publication date: August 2001)

Phylogenetic Relationships Among the Genera of Taxodiaceae and Cupressaceae: Evidence from rbcL Sequences

article

Phylogenetic Relationships Within Lithophragma (Saxifragaceae): Hybridization, Allopolyploidy, and Ovary Diversification

scientific article published in 1999

Phylogenetic Relationships in Cornus Based on Chloroplast DNA Restriction Sites: Implications for Biogeography and Character Evolution

scholarly article by Qiu-Yun Xiang et al published October 1996 in Systematic Botany

Phylogenetic Relationships in Fagales Based on DNA Sequences from Three Genomes

scholarly article by Rui‐Qi Li et al published March 2004 in International Journal of Plant Sciences

Phylogenetic Relationships in Subtribe Scorzonerinae (Asteraceae: Cichorioideae: Cichorieae) Based on ITS Sequence Data

scientific article (publication date: August 2004)

Phylogenetic Relationships in Tribe Cardueae (Asteraceae) Based on ITS Sequences

scholarly article by Alfonso Susanna et al published August 1995 in American Journal of Botany

Phylogenetic Significance of Chloroplast DNA Restriction Site Varition in the Ipomopsis aggregata Complex and Related Species (Polemoniaceae)

scientific article published in 1993

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

scientific article

Phylogenetic analysis of large molecular data sets

scholarly article

Phylogenetic diversification of glycogen synthase kinase 3/SHAGGY-like kinase genes in plants

scientific article (publication date: 21 February 2006)

Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China

article

Phylogenetic relationships among early-diverging eudicots based on four genes: were the eudicots ancestrally woody?

scientific article published in April 2004

Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach

scientific article

Phylogenetic relationships and evolution of Crassulaceae inferred from matK sequence data

scientific article

Phylogenetic relationships in Saxifragaceae sensu lato: A comparison of topologies based on 18S rDNA and rbcL sequences ⬇️

scientific article published on April 1, 1997

Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae

scientific article

Phylogenetics and Evolution of the Macaronesian Clade of Crassulaceae Inferred from Nuclear and Chloroplast Sequence Data

scientific article published in 2002

Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL

article

Phylogenomic analysis of <i>Tibouchina s.s.</i> (Melastomataceae) highlights the evolutionary complexity of Neotropical savannas

scientific article published in 2022

Phylogenomic and structural analyses of 18 complete plastomes across nearly all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution

scientific article published on 24 December 2015

Phylogenomic conflict resulting from ancient introgression following species diversification in Stewartia s.l. (Theaceae)

scientific article published on 23 February 2019

Phylogeny Reconstruction and Functional Constraints in Organellar Genomes: Plastid atpB and rbcL Sequences Versus Animal Mitochondrion

scholarly article by Vincent Savolainen et al published 1 July 2002 in Systematic Biology

Phylogeny and Biogeography of Erythronium (Liliaceae) Inferred from Chloroplast matK and Nuclear rDNA ITS Sequences

scientific article published in 2003

Phylogeny and Biogeography of Morus (Moraceae)

scientific article published in 2023

Phylogeny and Divergence Time Estimation in Illicium with Implications for New World Biogeography

scholarly article by Ashley B. Morris et al published 1 April 2007 in Systematic Botany

Phylogeny and diversification of B‐function MADS‐box genes in angiosperms: evolutionary and functional implications of a 260‐million‐year‐old duplication ⬇️

scientific article published on December 1, 2004

Phylogeny and domain evolution in the APETALA2-like gene family

scientific article published on 8 September 2005

Phylogeny and evolutionary history of glycogen synthase kinase 3/SHAGGY-like kinase genes in land plants

scientific article

Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia

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Phylogeny of ambrosia beetle symbionts in the genus Raffaelea

scientific article published on 22 September 2014

Phylogeny of extant and fossil Juglandaceae inferred from the integration of molecular and morphological data sets

scientific article

Phylogeny of seed plants based on evidence from eight genes ⬇️

scientific article (publication date: October 2002)

Phylogeny of the Polypodium vulgare Complex: Insights from Chloroplast DNA Restriction Site Data

scholarly article by Christopher H. Haufler et al published April 1995 in Systematic Botany

Phylogeny of theRosidae: A dense taxon sampling analysis

scholarly article by Miao Sun et al published July 2016 in Journal of Systematics and Evolution

Phylogeny, Classification and Floral Evolution of Water Lilies (Nymphaeaceae; Nymphaeales): A Synthesis of Non-molecular, rbcL, matK, and 18S rDNA Data

scholarly article by Donald H. Les et al published January 1999 in Systematic Botany

Phylogeny, divergence times, and historical biogeography of the angiosperm family Saxifragaceae

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Phylogeographical structure and temporal complexity in American sweetgum (Liquidambar styraciflua; Altingiaceae).

scientific article published on 24 July 2008

Phylotranscriptomic Analyses Reveal Asymmetrical Gene Duplication Dynamics and Signatures of Ancient Polyploidy in Mints

scientific article published on 01 December 2019

Phylotranscriptomic analysis of the origin and early diversification of land plants

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Physiological Evolution and Association between Physiology and Growth Form in Aeonium (Crassulaceae)

scientific article published on May 2007

Plant and fungal species interactions differ between aboveground and belowground habitats in mountain forests of eastern China

scientific article published in 2022

Plant reproductive genomics at the Plant and Animal Genome Conference

scientific article (publication date: 2005)

Plants meet machines: Prospects in machine learning for plant biology

publication published on 01 June 2020

Plants meet machines: Prospects in machine learning for plant biology

scientific article published on 01 July 2020

Plants, Biodiversity, and Climate Change

scientific article published in 2007

Plastid phylogenomic analysis of green plants: A billion years of evolutionary history

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Plastid phylogenomic insights into the evolution of Caryophyllales

scientific article published on 05 February 2019

Polyphyly of the Tuberous Lomatiums (Apiaceae): cpDNA Evidence for Morphological Convergence

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Polyploidy and genome evolution in plants

scientific article published on 2 December 2015

Polyploidy and novelty: Gottlieb's legacy

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Polyploidy and the proteome

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Polyploidy: A Biological Force From Cells to Ecosystems

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Polyploidy: Pitfalls and paths to a paradigm

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Polyploidy: an evolutionary and ecological force in stressful times

publication published on 01 March 2021

Population genetic structure, genetic diversity, and natural history of the South American species of Nothofagus subgenus Lophozonia (Nothofagaceae) inferred from nuclear microsatellite data

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Population genetic variation, geographic structure, and multiple origins of autopolyploidy in Galax urceolata

scientific article published on 12 June 2015

Potential distributional shifts in North America of allelopathic invasive plant species under climate change models ⬇️

scientific article published on 12 July 2021

Progress Out of a Pandemic: Global collections, data sharing, and changing standards of practice

scientific article published in 2020

Pure polyploidy: Closing the gaps in autopolyploid research ⬇️

scientific article published on 15 June 2017

Putative Parentage of Six Old World Polyploids in Tragopogon L. (Asteraceae: Scorzonerinae) Based on ITS, ETS, and Plastid Sequence Data

scientific article published on November 2008

Quantifying error in occurrence data: Comparing the data quality of iNaturalist and digitized herbarium specimen data in flowering plant families of the southeastern United States

scientific article published in 2023

Rapid <i>in situ</i> diversification rates in Rhamnaceae explain the parallel evolution of high diversity in temperate biomes from global to local scales

scientific article published on 16 January 2024

Rapid and accurate pyrosequencing of angiosperm plastid genomes

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Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae).

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Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin.

scientific article published on 19 January 2012

Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils

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Rates of niche and phenotype evolution lag behind diversification in a temperate radiation

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Reassessment of phylogeographical structure in an eastern North American tree using Monmonier’s algorithm and ecological niche modelling

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Recent accelerated diversification in rosids occurred outside the tropics

scientific article published on 03 July 2020

Recent long-distance dispersal overshadows ancient biogeographical patterns in a pantropical angiosperm family (Simaroubaceae, Sapindales).

scientific article published on 14 August 2009

Relationships within Cornales and circumscription of Cornaceae-matK and rbcL sequence data and effects of outgroups and long branches

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Repeated range expansions and inter-/postglacial recolonization routes of Sargentodoxa cuneata (Oliv.) Rehd. et Wils. (Lardizabalaceae) in subtropical China revealed by chloroplast phylogeography

scientific article published on 27 February 2015

Research applications of primary biodiversity databases in the digital age

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Resolving an ancient, rapid radiation in Saxifragales

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Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome-scale data set.

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Resolving the phylogenetic position of Ombrocharis (Lamiaceae), with reference to the molecular phylogeny of tribe Elsholtzieae

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Reticulate evolution in the Acrolophus subgroup (Centaurea L., Compositae) from the western Mediterranean: origin and diversification of section Willkommia Blanca.

scientific article published on 18 August 2006

Review of the Application of Modern Cytogenetic Methods (FISH/GISH) to the Study of Reticulation (Polyploidy/Hybridisation).

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Revisiting the phylogeny of Dipsacales: New insights from phylogenomic analyses of complete plastomic sequences ⬇️

scientific article published on 12 August 2019

Ribosomal RNA genes evolution in Tragopogon: A story of New and Old World allotetraploids and the synthetic lines

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Rosid radiation and the rapid rise of angiosperm-dominated forests

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SIX INDEPENDENT LOSSES OF THE CHLOROPLAST DNA rpl2 INTRON IN DICOTYLEDONS: MOLECULAR AND PHYLOGENETIC IMPLICATIONS.

scientific article published on August 1991

SYSTEMATIC STUDIES AND CONSERVATION STATUS OF CLAYTONIA LANCEOLATA VAR. FLAVA (PORTULACACEAE)

scientific article published in 1998

Seed Funds Leverage External Awards for Research in Natural Resources and Agricultural Systems

Similar patterns of rDNA evolution in synthetic and recently formed natural populations of Tragopogon (Asteraceae) allotetraploids

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Simple Phylogenetic Tree Searches Easily "Succeed" with Large Matrices of Single Genes

scientific article (publication date: August 2006)

Soil pH determines bacterial distribution and assembly processes in natural mountain forests of eastern China

scientific article published on 16 August 2021

Spatial Phylogenetics of Florida Vascular Plants: The Effects of Calibration and Uncertainty on Diversity Estimates

scholarly article published 8 December 2018

Spatial phylogenetics of butterflies in relation to environmental drivers and angiosperm diversity across North America

scientific article published on 23 March 2021

Spatial phylogenetics of the North American flora ⬇️

scientific article published on 12 May 2020

Species delimitation 4.0: integrative taxonomy meets artificial intelligence ⬇️

scientific article published in 2024

Standards recommendations for the Earth BioGenome Project

scientific article published on 18 January 2022

Subfamilial Phylogenetic Relationships of the Bromeliaceae: Evidence from Chloroplast DNA Restriction Site Variation

scientific article published in July 1990

Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 Years after Ownbey's discovery

scientific article

T<scp>he evolution of the</scp><i>S<scp>treptanthus glandulosus</scp></i><scp>complex</scp> (C<scp>ruciferae): genetic divergence and gene flow in serpentine endemics</scp>

scientific article published in 1994

TRY plant trait database - enhanced coverage and open access

scientific article published on 31 December 2019

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)

scientific article

Taxonomic revision of the Opuntia humifusa complex (Opuntieae: Cactaceae) of the eastern United States

scientific article (publication date: 4 January 2017)

Terrestrial species adapted to sea dispersal: differences in propagule dispersal of two Caribbean mangroves

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Testing Deep Reticulate Evolution in Amaryllidaceae Tribe Hippeastreae (Asparagales) with ITS and Chloroplast Sequence Data

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The ABC model and its applicability to basal angiosperms

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The Amborella genome: an evolutionary reference for plant biology

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The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly

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The Cycas genome and the early evolution of seed plants

scientific article published on 18 April 2022

The Earth BioGenome Project 2020: Starting the clock

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The Effects of Herbarium Specimen Characteristics on Short-Read NGS Sequencing Success in Nearly 8000 Specimens: Old, Degraded Samples Have Lower DNA Yields but Consistent Sequencing Success

scientific article published in 2021

The Evolution of Serpentine Endemics: A Chloroplast DNA Phylogeny of the Streptanthus glandulosus Complex (Cruciferae)

scientific article published in 1994

The Genomes of All Angiosperms: A Call for a Coordinated Global Census

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The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae

scientific article published in January 2015

The Tree of Life: China project ⬇️

scientific article published in July 2016

The age of the angiosperms: a molecular timescale without a clock

scientific article published in June 2005

The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history

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The evolutionary origins of the cat attractant nepetalactone in catnip

scientific article published on 13 May 2020

The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression

scientific article (publication date: August 2007)

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

scientific article published in 2011

The legacy of diploid progenitors in allopolyploid gene expression patterns

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The origin and diversification of angiosperms

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The polyploid series of Centaurea toletana: glacial migrations and introgression revealed by nrDNA and cpDNA sequence analyzes.

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The polyploidy revolution then…and now: Stebbins revisited

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The potential of genomics in plant systematics

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The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century.

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The role of hybridization in plant speciation

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The role of phylogenetics in comparative genetics

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The root of the angiosperms revisited

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Three keys to the radiation of angiosperms into freezing environments

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Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus

scientific article published on 01 April 2010

Tolmiea diplomenziesii: A new species from the Pacific Northwest and the diploid sister taxon of the autotetraploid T. menziesii (Saxifragaceae)

scientific article published in 2007

Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras

scientific article published on 20 March 2019

Towards a comprehensive integration of morphological and genetic studies of floral development

scientific article published in April 2004

Towards a global perspective for <i>Salvia</i> L.: Phylogeny, diversification and floral evolution

scientific article published in 2023

Towards a phylogenetic nomenclature of Tracheophyta ⬇️

scientific article (publication date: August 2007)

Tragopogon lainzii a New Species of Tragopogon (Asteraceae) Segregated from T. dubius: Evidence from Morphological and Molecular Data

scientific article published in 2011

Trajectories of Homoeolog-Specific Expression in Allotetraploid <i>Tragopogon castellanus</i> Populations of Independent Origins

scientific article published on 23 June 2021

Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae)

scientific article (publication date: 2 June 2009)

Transcriptome Dynamics of the Inflorescence in Reciprocally Formed Allopolyploid Tragopogon miscellus (Asteraceae)

scientific article published on 06 August 2020

Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant

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Tree of life for the genera of Chinese vascular plants

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Using Phylogeny Reconstruction to Test Hypotheses of Hybrid Origin in Delphinium Section Diedropetala (Ranunculaceae)

scholarly article by Jason A. Koontz et al published 1 April 2004 in Systematic Botany

Using and navigating the plant tree of life

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Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

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Utility of Amborella trichopoda and Nuphar advena Expressed Sequence Tags for Comparative Sequence Analysis

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Walter S. Judd — Recipient of the 2011 Asa Gray Award

article by Douglas E. Soltis et al published 1 March 2012 in Systematic Botany

What we still don't know about polyploidy

scientific article published on October 2010

Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences

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Why sequence all eukaryotes?

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Widespread genome duplications throughout the history of flowering plants

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Worldwide Engagement for Digitizing Biocollections (WeDigBio): The Biocollections Community's Citizen-Science Space on the Calendar ⬇️

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