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List of works by Anne-Mieke Vandamme

1,1,3-Trioxo-2H,4H-thieno[3,4-e][1,2,4]thiadiazine (TTD) derivatives: a new class of nonnucleoside human immunodeficiency virus type 1 (HIV-1) reverse transcriptase inhibitors with anti-HIV-1 activity

scientific article

2',5'-Bis-O-(tert-butyldimethylsilyl)-3'-spiro-5''-(4''-amino-1'',2''- oxathiole-2'',2'-dioxide)pyrimidine (TSAO) nucleoside analogues: highlyselective inhibitors of human immunodeficiency virus type 1 that are targeted at the viral reverse transcri

scientific article (publication date: 15 May 1992)

A Bayesian network approach to study host and viral genetic correlates of HIV-1 disease progression.

scientific article published on 3 October 2011

A Bayesian statistical analysis of human T-cell lymphotropic virus evolutionary rates

scientific article published on 30 November 2004

A Fashi Lymphoproliferative Phenotype Reveals Non-Apoptotic Fas Signaling in HTLV-1-Associated Neuroinflammation

scientific article published on 14 February 2017

A collaborative environment allowing clinical investigations on integrated biomedical databases

scientific article published on January 2009

A combination of poor adherence and a low baseline susceptibility score is highly predictive for HAART failure.

scientific article published in July 2002

A genetic IFN/STAT1/FAS axis determines CD4 T stem cell memory levels and apoptosis in healthy controls and Adult T-cell Leukemia patients.

scientific article published on 13 February 2018

A genotypic assay for the amplification and sequencing of gag and protease from diverse human immunodeficiency virus type 1 group M subtypes.

scientific article

A genotypic assay for the amplification and sequencing of integrase from diverse HIV-1 group M subtypes.

scientific article

A genotypic drug resistance interpretation algorithm that significantly predicts therapy response in HIV-1-infected patients.

scientific article

A genotypic resistance assay for the detection of drug resistance in the human immunodeficiency virus type 1 envelope gene

scientific article published in January 2005

A near-full length genotypic assay for HCV1b.

scientific article published on 22 September 2014

A new ensemble coevolution system for detecting HIV-1 protein coevolution.

scientific article

A primate T-lymphotropic virus, PTLV-L, different from human T-lymphotropic viruses types I and II, in a wild-caught baboon (Papio hamadryas).

scientific article

A proline-to-histidine substitution at position 225 of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) sensitizes HIV-1 RT to BHAP U-90152.

scientific article published on June 1998

A public HTLV-1 molecular epidemiology database for sequence management and data mining

scientific article

A quantitative GFP-based bioassay for the detection of HIV-1 Tat transactivation inhibitors

scientific article published in August 2001

A rapid and convenient variant of fusion-PCR to construct chimeric flaviviruses

scientific article published on March 2003

A rapid phenotypic assay for detecting multiple nucleoside analogue reverse transcriptase inhibitor-resistant HIV-1 in plasma.

scientific article

A second target for the peptoid Tat/transactivation response element inhibitor CGP64222: inhibition of human immunodeficiency virus replication by blocking CXC-chemokine receptor 4-mediated virus entry

scientific article published in January 2000

A selective defect in Fas-mediated apoptosis in HAM/TSP: An ex vivo, in vitro and in silico study.

scientific article published on 7 January 2014

A stably expressed llama single-domain intrabody targeting Rev displays broad-spectrum anti-HIV activity

scientific article

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences

scientific article (publication date: July 2009)

A synthetic HIV-1 Rev inhibitor interfering with the CRM1-mediated nuclear export

scientific article

A18 Random amplification with next-generation sequencing to cover HIV and HCV full-length genomes.

scientific article

A21 HIV-1 sub-subtype F1 outbreak among MSM in Belgium

scientific article published on 5 March 2017

A36 Prevalence of HIV-1 subtypes in Slovenia with an emphasis on molecular and phylogenetic investigation of subtype A.

scientific article published on 05 March 2017

Abstracts from the 8th European and the 1st Brazilian workshops on virus evolution and molecular epidemiology

article

Activity of non-nucleoside reverse transcriptase inhibitors against HIV-2 and SIV

scientific article

Adult T-Cell Leukemia/Lymphoma With a Mixed CD4+ and CD8+ Phenotype and Indolent Course

article published in 2007

African origin of human T-lymphotropic virus type 2 (HTLV-2) supported by a potential new HTLV-2d subtype in Congolese Bambuti Efe Pygmies.

scientific article published on May 1998

Algorithms for the interpretation of HIV-1 genotypic drug resistance information

scientific article published on 30 May 2006

An automated genotyping system for analysis of HIV-1 and other microbial sequences

scientific article published on 2 August 2005

An integrated map of HIV genome-wide variation from a population perspective.

scientific article

Analysis of HIV-1 pol sequences using Bayesian Networks: implications for drug resistance

scientific article published on 4 October 2006

Analysis of complex HIV-1 intersubtype recombinants using a Bayesian scanning method

article

Analysis of the evolutionary relationships of HIV-1 and SIVcpz sequences using bayesian inference: implications for the origin of HIV-1.

scientific article published on 29 August 2003

Analysis of the serotype and genotype correlation of VP1 and the 5' noncoding region in an epidemiological survey of the human enterovirus B species

scientific article published on March 2004

Anti-human immunodeficiency virus drug combination strategies

scientific article published in May 1998

Antiretroviral drug resistance in HIV-1 therapy-naive patients in Cuba

scientific article

Antiretroviral resistance in different HIV-1 subtypes: impact on therapy outcomes and resistance testing interpretation

scientific article published on March 2007

Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models

scientific article

Antiviral activity of the bicyclam derivative JM3100 against drug-resistant strains of human immunodeficiency virus type 1.

scientific article published on March 1996

Appearance of a single amino acid insertion at position 33 in HIV type 1 protease under a lopinavir-containing regimen, associated with reduced protease inhibitor susceptibility

scientific article published on 13 May 2011

Ascorbic acid has superior antiviral and antiproliferative effects over IFN-alpha in HAM/TSP PBMC ex vivo.

scientific article published on 6 June 2011

Ascorbic acid has superior ex vivo antiproliferative, cell death-inducing and immunomodulatory effects over IFN-α in HTLV-1-associated myelopathy

scientific article

Asparagine 42 of the conserved endo-inulinase INU2 motif WMNDPN from Aspergillus ficuum plays a role in activity specificity.

scientific article published on November 2013

Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals

scientific article

Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversity

scientific article published in July 2006

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools

scientific article published on 7 May 2013

B cell costimulatory molecules as potential biomarkers in HAM/TSP.

scientific article published on 6 June 2011

BaEV is a relic from an ancient retrovirus that crossed species barriers.

scientific article published in December 1996

Baseline HIV Type 1 Genotypic Resistance to a Newly Added Nucleoside Analog Is Predictive of Virologic Failure of the New Therapy

article

Bayesian network analyses of resistance pathways against efavirenz and nevirapine

scientific article published on October 2008

Bayesian network analysis of resistance pathways against HIV-1 protease inhibitors

scientific article published on 28 November 2006

Bioinformatics in virus research

scientific article published in 2007

Bioinformatics tools for the investigation of emerging and re-emerging infectious diseases

scientific article published on 17 April 2009

Bioinformatics tools for the investigation of viral evolution and molecular epidemiology

scientific article published in December 2014

Bioinformatics tools for the investigation of viral evolution and molecular epidemiology

scholarly article by Anne-Mieke Vandamme published April 2010 in Infection, Genetics and Evolution

Blinded, multicenter quality control study for the quantification of human immunodeficiency virus type 1 RNA in plasma by the Belgian AIDS reference laboratories

scientific article published in April 2000

Brazilian HTLV type 2a strains from intravenous drug users (IDUs) appear to have originated from two sources: Brazilian Amerindians and European/North American IDUs

scientific article published on June 2003

Bridging epidemiology with population genetics in a low incidence MSM-driven HIV-1 subtype B epidemic in Central Europe

scientific article

Broad-spectrum antiviral activity and mechanism of antiviral action of the fluoroquinolone derivative K-12.

scientific article published on September 1998

CD64 as a biomarker and therapeutic target in HAM/TSP and HTLV-1-associated Infective Dermatitis.

scientific article published on 6 June 2011

CD80+ and CD86+ B cells as biomarkers and possible therapeutic targets in HTLV-1 associated myelopathy/tropical spastic paraparesis and multiple sclerosis

scientific article published on 29 January 2014

CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba

scientific article published on 28 January 2015

Cell type-dependent effect of sodium valproate on human immunodeficiency virus type 1 replication in vitro.

scientific article published on January 1997

Cellular HIV-1 DNA levels in drug sensitive strains are equivalent to those in drug resistant strains in newly-diagnosed patients in Europe

scientific article

Change in hepatitis C virus genotype in hemodialysis patients after end-of-treatment response to interferon monotherapy--relapse or re-infection?

scientific article published in January 2008

Characteristics of the Pro225His mutation in human immunodeficiency virus type 1 (HIV-1) reverse transcriptase that appears under selective pressure of dose-escalating quinoxaline treatment of HIV-1

scientific article

Characterization of HIV-1 strains isolated from patients treated with TIBO R82913.

scientific article published on January 1994

Characterization of a novel simian immunodeficiency virus with a vpu gene from greater spot-nosed monkeys (Cercopithecus nictitans) provides new insights into simian/human immunodeficiency virus phylogeny

scientific article

Characterization of a recombinant chimeric plasminogen activator composed of a fibrin fragment-d-dimer-specific humanized monoclonal antibody and a truncated single-chain urokinase

scientific article published on 01 April 1992

Characterization of amino acids Arg, Ser and Thr at position 70 within HIV-1 reverse transcriptase.

scientific article published on 7 August 2014

Circulation of genetically distinct contemporary human coronavirus OC43 strains

Clinical Implications of Reverse Transcriptase Inhibitor Resistance

Clinical and virological response to antiretroviral drugs among HIV patients on first-line treatment in Dar-es-Salaam, Tanzania

scientific article published on 14 July 2014

Clinical characteristics of patients in Peru with human T cell lymphotropic virus type 1-associated tropical spastic paraparesis.

scientific article published on September 2004

Clinical evaluation of Rega 8: an updated genotypic interpretation system that significantly predicts HIV-therapy response

scientific article

Comparative rates of nucleotide sequence variation in the hypervariable region of E1/E2 and the NS5b region of hepatitis C virus in patients with a spectrum of liver disease resulting from a common source of infection

scientific article published in September 2002

Comparison of CREB- and NF-kappaB-mediated transactivation by human T lymphotropic virus type II (HTLV-II) and type I (HTLV-I) tax proteins

scientific article

Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time

scientific article

Comparison of the LiPA HIV-1 RT test, selective PCR and direct solid phase sequencing for the detection of HIV-1 drug resistance mutations

scientific article

Comparison of three ELISAs for the routine diagnosis of human T-lymphotropic virus infection in a high-prevalence setting in Peru

scientific article published on 19 January 2009

Complete genome sequence of Montana Myotis leukoencephalitis virus, phylogenetic analysis and comparative study of the 3' untranslated region of flaviviruses with no known vector

scientific article published in August 2002

Complete genome sequence, taxonomic assignment, and comparative analysis of the untranslated regions of the Modoc virus, a flavivirus with no known vector

scientific article published on February 2002

Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event

scientific article

Complete nucleotide sequence of the Italian human T-cell lymphotropic virus type II isolate Gu and phylogenetic identification of a possible origin of South European epidemics

scientific article published in June 1996

Complete nucleotide sequence of the new simian T-lymphotropic virus, STLV-PH969 from a Hamadryas baboon, and unusual features of its long terminal repeat

scientific article published in July 1997

Consensus statement of the European guidelines on clinical management of HIV-1 tropism testing.

scientific article published on 8 November 2010

Construction and characterization of a functional chimeric murine-human antibody directed against human fibrin fragment-D dimer

scientific article

Construction and characterization of a recombinant murine monoclonal antibody directed against human fibrin fragment-D dimer

scientific article

Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models.

scientific article published on 26 April 2011

Correction: Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis

scientific article

Current levels of drug resistance among therapy-naive HIV-infected patients have significant impact on treatment response

scientific article published in December 2004

DEB025 (Alisporivir) inhibits hepatitis C virus replication by preventing a cyclophilin A induced cis-trans isomerisation in domain II of NS5A

scientific article (publication date: 27 October 2010)

Dating the common ancestor of SIVcpz and HIV-1 group M and the origin of HIV-1 subtypes using a new method to uncover clock-like molecular evolution

scientific article (publication date: February 2001)

Dating the origin of the African human T-cell lymphotropic virus type-i (HTLV-I) subtypes

scientific article published in April 2001

Declining Prevalence of HIV-1 Drug Resistance in Antiretroviral Treatment-exposed Individuals in Western Europe ⬇️

scientific article published on January 11, 2013

Decreasing population selection rates of resistance mutation K65R over time in HIV-1 patients receiving combination therapy including tenofovir.

scientific article published on 30 September 2012

Detection of HIV-1 RNA in plasma and serum samples using the NASBA amplification system compared to RNA-PCR.

scientific article published on March 1995

Detection of Natural Resistance-Associated Substitutions by Ion Semiconductor Technology in HCV1b Positive, Direct-Acting Antiviral Agents-Naïve Patients

scientific article published on 27 August 2016

Development and validation of a multiplex real-time PCR assay for simultaneous genotyping and human T-lymphotropic virus type 1, 2, and 3 proviral load determination

scientific article

Development of HTLV-1 Database for data management and datamining HTLV-1 sequences

scientific article published on 6 June 2011

Development of resistance of human immunodeficiency virus type 1 to dextran sulfate associated with the emergence of specific mutations in the envelope gp120 glycoprotein.

scientific article published on July 1997

Diagnosis of human immunodeficiency virus infection by a polymerase chain reaction assay evaluated in patients harbouring strains of diverse geographical origin

scientific article published in February 1998

Diagnostic Value of Different Adherence Measures Using Electronic Monitoring and Virologic Failure as Reference Standards

scholarly article by Ann E. Deschamps et al published September 2008 in AIDS Patient Care and STDs

Different epidemic potentials of the HIV-1B and C subtypes

scientific article published in May 2005

Different population dynamics of human T cell lymphotropic virus type II in intravenous drug users compared with endemically infected tribes

scientific article published on November 1999

Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors of human immunodeficiency virus are subtype dependent

scientific article

Discordant genotypic interpretation and phenotypic role of protease mutations in HIV-1 subtypes B and G.

scientific article published on 10 January 2009

Discovery and characterization of auxiliary proteins encoded by type 3 simian T-cell lymphotropic viruses

scientific article

Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution

scientific article published on July 2015

Disulfide-containing macrolides that inhibit a late stage of the replicative cycle of human immunodeficiency virus

scientific article published in 1997

Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update

scientific article

Early sequential development of infective dermatitis, human T cell lymphotropic virus type 1-associated myelopathy, and adult T cell leukemia/lymphoma

scientific article published on February 2008

Effect of human immunodeficiency virus type 1 protease inhibitor therapy and subtype on development of resistance in subtypes B and G.

scientific article published on 2 July 2009

Efficacy of triple combination therapy with zidovudine (ZDV) plus zalcitabine (ddC) plus lamivudine (3TC) versus double (ZDV+3TC) combination therapy in patients previously treated with ZDV+ddC

scientific article published on 01 December 1996

Enhanced heterosexual transmission hypothesis for the origin of pandemic HIV-1

scientific article (publication date: 3 October 2012)

Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape

scientific article

Estimating the relative contribution of dNTP pool imbalance and APOBEC3G/3F editing to HIV evolution in vivo

scientific article published in October 2007

Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment

scientific article published on 17 November 2007

European recommendations for the clinical use of HIV drug resistance testing: 2011 update

scientific article published on April 1, 2011

Evaluating Clinical Isolates for Their Phenotypic and Genotypic Resistance Against Anti-HIV Drugs

scientific article

Evaluation of the automatic editing tool RECall for HIV-1 pol and V3 loop sequences

scientific article published on 5 June 2013

Evaluation of two commercial kits for the detection of genotypic drug resistance on a panel of HIV type 1 subtypes A through J.

scientific article

Evidence for a post-Columbian introduction of human T-cell lymphotropic virus [type I] [corrected] in Latin America

scientific article published in November 1998

Evidence for a second simian T-cell lymphotropic virus type 3 in Cercopithecus nictitans from Cameroon.

scientific article published on December 2001

Evolution of genotypic resistance to enfuvirtide in HIV-1 isolates from different group M subtypes

scientific article published on 23 February 2009

Evolutionary dynamics of human retroviruses investigated through full-genome scanning

scientific article published on 5 January 2005

Evolutionary rate and genetic heterogeneity of human T-cell lymphotropic virus type II (HTLV-II) using isolates from European injecting drug users

scientific article published in May 1998

Evolutionary strategies of human T-cell lymphotropic virus type II.

scientific article

Expert consensus statement on the science of HIV in the context of criminal law

article

Exploring full-genome sequences for phylogenetic support of HIV-1 transmission events

article

Exploring resistance pathways for first-generation NS3/4A protease inhibitors boceprevir and telaprevir using Bayesian network learning

scientific article published on 09 May 2017

Failure to quantify viral load with two of the three commercial methods in a pregnant woman harboring an HIV type 1 subtype G strain.

scientific article published in March 1998

Familial transmission and minimal sequence variability of human T-lymphotropic virus type I (HTLV-I) in Zaire

scientific article published on September 1994

Family Aggregation of Human T-Lymphotropic Virus 1-Associated Diseases: A Systematic Review

scientific article

Fas 670 promoter polymorphism is associated to susceptibility, clinical presentation, and survival in adult T cell leukemia.

scientific article

Fatal brain necrosis in primary HIV infection

scientific article

Frequent HTLV-1 infection in the offspring of Peruvian women with HTLV-1-associated myelopathy/tropical spastic paraparesis or strongyloidiasis

scientific article published on October 2007

Full-Length HIV Type 1 Genome Analysis Showing Evidence for HIV Type 1 Transmission from a Nonprogressor to Two Recipients Who Progressed to AIDS

article

Full-genome analysis of a highly divergent simian T-cell lymphotropic virus type 1 strain in Macaca arctoides

scientific article published on July 2005

Full-length genomic sequence of an HIV type 1 subtype G from Kinshasa.

scientific article published in April 1999

Functional conservation of HIV-1 Gag: implications for rational drug design

scientific article published on 31 October 2013

Gender differences in HIV disease progression and treatment outcomes among HIV patients one year after starting antiretroviral treatment (ART) in Dar es Salaam, Tanzania

scientific article

Genetic Diversity and Selective Pressure in Hepatitis C Virus Genotypes 1-6: Significance for Direct-Acting Antiviral Treatment and Drug Resistance

scientific article

Genetic analyses reveal structured HIV-1 populations in serially sampled T lymphocytes of patients receiving HAART

article

Genetic variability and molecular evolution of the human respiratory syncytial virus subgroup B attachment G protein

scientific article

Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal

scientific article published in 2022

Genotypic drug resistance interpretation algorithms display high levels of discordance when applied to non-B strains from HIV-1 naive and treated patients

scientific article

Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis

scientific article

Global Dispersal Pattern of HIV Type 1 Subtype CRF01_AE: A Genetic Trace of Human Mobility Related to Heterosexual Sexual Activities Centralized in Southeast Asia

scientific article published on 15 December 2014

Globin haplotypes of human T-cell lymphotropic virus type I-infected individuals in Salvador, Bahia, Brazil, suggest a post-Columbian African origin of this virus.

scientific article published in August 2003

Growing divergence inside primate T cell lymphotropic viruses

scientific article

HAM/TSP in relatives of HAM/TSP cases and in relatives of asymptomatic HTLV-1 carriers.

scientific article published on 7 January 2014

HCV1b genome evolution under selective pressure of the cyclophilin inhibitor alisporivir during the DEB-025-HCV-203 phase II clinical trial.

scientific article published on 30 June 2016

HIV forensics: pitfalls and acceptable standards in the use of phylogenetic analysis as evidence in criminal investigations of HIV transmission

article

HIV-1 Gag C-terminal amino acid substitutions emerging under selective pressure of protease inhibitors in patient populations infected with different HIV-1 subtypes

scientific article

HIV-1 compartmentalization in diverse leukocyte populations during antiretroviral therapy

scientific article

HIV-1 drug resistance: where do polymorphisms fit in?

scientific article

HIV-1 drug-resistance patterns among patients on failing treatment in a large number of European countries.

scientific article

HIV-1 fitness landscape models for indinavir treatment pressure using observed evolution in longitudinal sequence data are predictive for treatment failure

scientific article

HIV-1 genetic variants circulation in the North of Angola

article

HIV-1 genotypic drug resistance testing: digging deep, reaching wide?

scientific article published on 23 June 2015

HIV-1 gp120 N-linked glycosylation differs between plasma and leukocyte compartments

scientific article

HIV-1 protease and reverse transcriptase mutation patterns responsible for discordances between genotypic drug resistance interpretation algorithms

scientific article published on May 2003

HIV-1 protease mutation 82M contributes to phenotypic resistance to protease inhibitors in subtype G

article

HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics

scientific article published on 14 January 2013

HIV-1 subtype is an independent predictor of reverse transcriptase mutation K65R in HIV-1 patients treated with combination antiretroviral therapy including tenofovir

scientific article published on 26 November 2012

HIV-1 transmitted drug resistance in Latin America and the Caribbean: what do we know?

scientific article published on October 2012

HIV-1-specific reverse transcriptase inhibitors show differential activity against HIV-1 mutant strains containing different amino acid substitutions in the reverse transcriptase

scientific article published on January 1993

HTLV-II seroprevalence in pygmies across Africa since 1970.

scientific article published in August 1993

HTLV-negative and HTLV type I-positive tropical spastic paraparesis in northeastern Brazil

scientific article published on February 1995

Hepatitis C virus evolutionary patterns studied through analysis of full-genome sequences

scientific article

High GUD incidence in the early 20 century created a particularly permissive time window for the origin and initial spread of epidemic HIV strains

scientific article

High frequency of antiviral drug resistance and non-B subtypes in HIV-1 patients failing antiviral therapy in Cuba.

scientific article published on 13 September 2012

High frequency of antiviral drug resistance and non-b subtypes in HIV-1 patients failing antiviral therapy in Cuba

scientific article published on 2 November 2014

High prevalence of CRF02_AG and many minor resistance-related mutations at the protease gene among HIV-infected treatment-naive immigrants in Madrid

article

Horizontal gene transfer from human host to HIV-1 reverse transcriptase confers drug resistance and partly compensates for replication deficits

scientific article published on 25 April 2014

Human T-lymphotropic virus 1: recent knowledge about an ancient infection

scientific article

Human immunodeficiency virus gene regulation as a target for antiviral chemotherapy.

scientific article

Human retroviruses (HIV and HTLV) in Brazilian Indians: seroepidemiological study and molecular epidemiology of HTLV type 2 isolates

scientific article published on January 2002

IFN-beta pro-apoptotic and antiproliferative activity is superior to IFN-alpha in adult T-cell leukemia: Ex vivo response predicts survival

IFN-β induces greater antiproliferative and proapoptotic effects and increased p53 signaling compared with IFN-α in PBMCs of Adult T-cell Leukemia/Lymphoma patients

scientific article published on 27 January 2017

Identification in gelada baboons (Theropithecus gelada) of a distinct simian T-cell lymphotropic virus type 3 with a broad range of Western blot reactivity

scientific article published on February 2004

Identifying pre-existing NS3 and NS5A resistance-associated variants and transmission chains in the Polish HIV/HCV genotype 1 epidemic: impact on prevention and treatment.

scientific article published on 15 January 2018

Impact of HCV genotype on treatment regimens and drug resistance: a snapshot in time

scientific article

Impact of HIV-1 protease mutations A71V/T and T74S on M89I/V-mediated protease inhibitor resistance in subtype G isolates

scientific article

Impact of HIV-1 subtype and antiretroviral therapy on protease and reverse transcriptase genotype: results of a global collaboration

scientific article

Impact of genetic variation of HIV-1 on drug resistance development

article

Impact on replicative fitness of the G48E substitution in the protease of HIV-1: an in vitro and in silico evaluation

scientific article published in July 2008

Implications of hepatitis C virus subtype 1a migration patterns for virus genetic sequencing policies in Italy

scientific article

In vivo characteristics of human immunodeficiency virus type 1 intersubtype recombination: determination of hot spots and correlation with sequence similarity

scientific article published in October 2003

Increasing Prevalence of HIV-1 Transmitted Drug Resistance in Portugal: Implications for First Line Treatment Recommendations

scientific article published on 30 October 2020

Increasing prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences

scientific article

Inhibition of HIV type 1 Tat-mediated trans-activation by oncostatin M in HLtat cells.

scientific article published on November 1995

Initiation of HAART in drug-naive HIV type 1 patients prevents viral breakthrough for a median period of 35.5 months in 60% of the patients

scientific article

International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology

scientific article published in October 2013

Interpreting resistance data for HIV-1 therapy management--know the limitations

scientific article

Investigation of baseline susceptibility to protease inhibitors in HIV-1 subtypes C, F, G and CRF02_AG.

scientific article published in January 2006

Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment.

scientific article

Isolation of mRNA from membrane-bound polysomes synthesizing Sepia officinalis haemocyanin in Xenopus laevis oocytes

scientific article published on 01 January 1987

Isolation, cloning, and complete nucleotide sequence of a phenotypically distinct Brazilian isolate of human T-lymphotropic virus type II (HTLV-II).

scientific article published in May 2000

Laboratory guidelines for the practical use of HIV drug resistance tests in patient follow-up.

scientific article

Lack of evidence for infection with simian immunodeficiency virus in bonobos

scientific article published in February 2002

Large cluster outbreaks sustain the HIV epidemic among men having sex with men (MSM) in Quebec from 2002 to 2015.

scientific article

Limitations to contact tracing and phylogenetic analysis in establishing HIV type 1 transmission networks in Cuba

scientific article

Limited cross-border infections in patients newly diagnosed with HIV in Europe

scientific article published on 3 April 2013

Long-term stability of human immunodeficiency virus viral load and infectivity in whole blood.

scientific article published in May 1999

Male Circumcision and the Epidemic Emergence of HIV-2 in West Africa.

scientific article

Managing resistance to anti-HIV drugs: an important consideration for effective disease management.

scientific article

Mapping sites of positive selection and amino acid diversification in the HIV genome: an alternative approach to vaccine design?

scientific article

Mapping the genomic diversity of HCV subtypes 1a and 1b: Implications of structural and immunological constraints for vaccine and drug development

scientific article published on July 2016

Modelled in vivo HIV fitness under drug selective pressure and estimated genetic barrier towards resistance are predictive for virological response.

scientific article published in January 2008

Molecular Epidemiology of HIV-1 Infected Migrants Followed up in Portugal: Trends between 2001-2017

scientific article published on 28 February 2020

Molecular characterization of a complex, recombinant human immunodeficiency virus type 1 (HIV-1) isolate (A/G/J/K/?): evidence to support the existence of a novel HIV-1 subtype

scientific article published in October 2001

Molecular epidemiology of antiretroviral resistance in therapy-experienced HIV-1 patients in Cuba (2009).

scientific article published on 8 November 2010

Molecular evolution and circulation patterns of human respiratory syncytial virus subgroup a: positively selected sites in the attachment g glycoprotein

scientific article

Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain

scientific article published on September 2005

Molecular testing of multiple HIV-1 transmissions in a criminal case

scientific article published in October 2005

Mosaic genomes of the six major primate lentivirus lineages revealed by phylogenetic analyses

scientific article published on July 2003

Multi-science decision support for HIV drug resistance treatment

scientific article published in January 2008

Multiple dideoxynucleoside analogue-resistant (MddNR) HIV-1 strains isolated from patients from different European countries

scientific article published on October 1998

Multiple drug resistance to nucleoside analogues and nonnucleoside reverse transcriptase inhibitors in an efficiently replicating human immunodeficiency virus type 1 patient strain

scientific article

Mutations at 65 and 70 within the context of a Q151M cluster in human immunodeficiency virus type 1 reverse transcriptase impact the susceptibility to the different nucleoside reverse transcriptase inhibitors in distinct ways

scientific article

Mutations in both env and gag genes are required for HIV-1 resistance to the polysulfonic dendrimer SPL2923, as corroborated by chimeric virus technology

scientific article published on January 2005

Mutations in the non-nucleoside binding-pocket interfere with the multi-nucleoside resistance phenotype

scientific article published in March 2001

Mutations selected in HIV-2-infected patients failing a regimen including atazanavir.

scientific article

New 1,1,3-trioxo-2H,4H-thieno[3,4-e]thiadiazine derivatives are potent and highly selective HIV-1 inhibitors targeted at the reverse transcriptase

article

New retroviruses in human and simian T-lymphotropic viruses

scientific article published in July 1994

No response to first-line tenofovir+lamivudine+efavirenz despite optimization according to baseline resistance testing: Impact of resistant minority variants on efficacy of low genetic barrier drugs

article

Nonadherence to highly active antiretroviral therapy: clinically relevant patient categorization based on electronic event monitoring

scientific article published in March 2002

Novel recombinant virus assay for measuring susceptibility of human immunodeficiency virus type 1 group M subtypes to clinically approved drugs

scientific article published on 29 April 2009

On the contribution of Angola to the initial spread of HIV-1.

scientific article

Optimization of a genotypic assay applicable to all human immunodeficiency virus type 1 protease and reverse transcriptase subtypes

scientific article

Origins of HTLV-1 in South America

scientific article

Patient HIV-1 strains carrying the multiple nucleoside resistance mutations are cross-resistant to abacavir

article

Patterns of transmitted HIV drug resistance in Europe vary by risk group

scientific article (publication date: 2014)

Performance of ViroSeq HIV-1 Genotyping System in routine practice at a Belgian clinical laboratory

article

Performance of an in-house human immunodeficiency virus type 1 genotyping system for assessment of drug resistance in Cuba

scientific article

Performance of the VERSANT®HIV-1 Resistance Assays (LiPA) for detecting drug resistance in therapy-naive patients infected with different HIV-1 subtypes

article

Pharmacy refill adherence outperforms self-reported methods in predicting HIV therapy outcome in resource-limited settings

scientific article

Phenotypic Assays and Sequencing Are Less Sensitive Than Point Mutation Assays for Detection of Resistance in Mixed HIV-1 Genotypic Populations

article

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context.

scientific article published on 26 August 2017

Phylogenetic analysis as a forensic tool in HIV transmission investigations: a literature review.

scientific article published on 26 December 2017

Phylogenetic analysis of a simian T lymphotropic virus type I from a hamadryas baboon

scientific article published in November 1997

Phylogenetic analysis of the full-length SARS-CoV sequences: evidence for phylogenetic discordance in three genomic regions.

scientific article published in November 2004

Phylogenetic classification of TT virus groups based on the N22 region is unreliable

scientific article published on April 2002

Phylogenetic evidence for underreporting of male-to-male sex among human immunodeficiency virus-infected donors in the Netherlands and Flanders

scientific article published on 4 April 2017

Phylogenetic reconstruction of a known HIV-1 CRF04_cpx transmission network using maximum likelihood and Bayesian methods

scientific article published in November 2004

Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1.

scientific article

Phylogenetic techniques improve our understanding of virus evolution

scholarly article by Anne-Mieke Vandamme published April 2005 in Infection, Genetics and Evolution

Phylogeny of primate T lymphotropic virus type 1 (PTLV-1) including various new Asian and African non-human primate strains

scientific article published on 23 August 2006

Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A.

scientific article published on 21 December 2011

Polymerase chain reaction (PCR) as a diagnostic tool in HIV infection

scientific article

Potent and highly selective human immunodeficiency virus type 1 (HIV-1) inhibition by a series of alpha-anilinophenylacetamide derivatives targeted at HIV-1 reverse transcriptase

scientific article

Predicted residual activity of rilpivirine in HIV-1 infected patients failing therapy including NNRTIs efavirenz or nevirapine

scientific article published on 19 February 2015

Prediction of response to antiretroviral therapy by human experts and by the EuResist data-driven expert system (the EVE study).

scientific article

Predictive value of HIV-1 genotypic resistance test interpretation algorithms

scientific article published on August 2009

Presence of 2',5'-Bis-O-(tert-butyldimethylsilyl)-3'-spiro-5"-(4"-amino-1",2"-oxath iole-2",2"-dioxide) (TSAO)-resistant virus strains in TSAO-inexperienced HIV patients

scientific article published in June 2000

Prevalence and characteristics of multinucleoside-resistant human immunodeficiency virus type 1 among European patients receiving combinations of nucleoside analogues

scientific article published in August 2000

Prevalence and correlates of nonadherence to antiretroviral therapy in a population of HIV patients using Medication Event Monitoring System

scientific article published in November 2004

Prevalence and epidemiology of HIV type 1 drug resistance among newly diagnosed therapy-naive patients in Belgium from 2003 to 2006.

scientific article published in March 2008

Prevalence and origin of HIV-1 group M subtypes among patients attending a Belgian hospital in 1999.

scientific article

Prevalence of antiretroviral drug resistance mutations and HIV-1 non-B subtypes in newly diagnosed drug-naïve patients in Slovenia, 2000-2004.

scientific article

Prevalence of drug-resistant HIV-1 variants in untreated individuals in Europe: implications for clinical management

scientific article published on 15 August 2005

Prevalence of genotypic resistance among antiretroviral drug-naive HIV-1-infected patients in Belgium

scientific article published in March 2001

Primate T-lymphotropic virus type I LTR sequence variation and its phylogenetic analysis: compatibility with an African origin of PTLV-I.

scientific article published on July 1994

Profile of Resistance of Human Immunodeficiency Virus to Mannose-Specific Plant Lectins

article

Profile of resistance of human immunodeficiency virus to mannose-specific plant lectins

scientific article published on October 2004

Protease mutation M89I/V is linked to therapy failure in patients infected with the HIV-1 non-B subtypes C, F or G

article

Protease mutation M89I/V is linked to therapy failure in patients infected with the HIV-1 non-B subtypes C, F or G.

scientific article

Proviral HTLV-I and HTLV-II in the Efe pygmies of northeastern Zaire

scientific article

Quality Control of Next-Generation Sequencing-Based HIV-1 Drug Resistance Data in Clinical Laboratory Information Systems Framework

scientific article published on 14 June 2020

Quantification of HIV-1 RNA in Plasma: Comparable Results with the NASBA HIV-1 RNA QT and the AMPLICOR HIV Monitor Test

article

Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing

scientific article published on 7 January 2016

Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution

scientific article published on 30 September 2009

Questions on the evolution of primate T-lymphotropic viruses raised by molecular and epidemiological studies of divergent strains

scientific article published on January 1996

Rapid, phenotypic HIV-1 drug sensitivity assay for protease and reverse transcriptase inhibitors

scientific article

Re-analysis of 34 full-length HIV-1 intersubtype recombinant sequences

article

Re-analysis of human immunodeficiency virus type 1 isolates from Cyprus and Greece, initially designated 'subtype I', reveals a unique complex A/G/H/K/? mosaic pattern.

scientific article

Reanalysis of the HIV-1 Circulating Recombinant Form A/E (CRF01_AE): Evidence of A/E/G Recombination

scientific article published on 01 May 2002

Reanalysis of the HIV-1 Circulating Recombinant Form A/E (CRF01_AE): Evidence of A/E/G Recombination

article

Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022)

scientific article published in 2022

Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form

scientific article

RegaDB: community-driven data management and analysis for infectious diseases

scientific article

Relapse or reinfection after failing hepatitis C direct acting antiviral treatment: Unravelled by phylogenetic analysis

scientific article published in PLoS ONE

Relating increasing hantavirus incidences to the changing climate: the mast connection

scientific article published on 16 January 2009

Resistance pathways of human immunodeficiency virus type 1 against the combination of zidovudine and lamivudine

scientific article published on 21 April 2010

Resistance-related mutations in the HIV-1 protease gene of patients treated for 1 year with the protease inhibitor ritonavir (ABT-538).

scientific article published in August 1996

Rising prevalence of HIV-1 non-B subtypes in Belgium: 1983-2001.

scientific article

Role of viral evolutionary rate in HIV-1 disease progression in a linked cohort

scientific article

S-adenosylhomocysteine hydrolase inhibitors interfere with the replication of human immunodeficiency virus type 1 through inhibition of the LTR transactivation.

scientific article published in December 1997

Science in court: the myth of HIV fingerprinting

scientific article

Sequence analysis of the first HTLV-I infection in Germany without relations to endemic areas

scientific article

Sequence analysis of two HTLV type I infections imported to Germany

scientific article published in September 1997

Seroprevalence and risk factors for human T-cell lymphotropic virus (HTLV-I) infection among ethnically and geographically diverse Peruvian women

scientific article published in June 2003

Simian T cell leukemia virus type I from naturally infected feral monkeys from central and west Africa encodes a 91-amino acid p12 (ORF-I) protein as opposed to a 99-amino acid protein encoded by HTLV type I from humans

scientific article published in March 1997

Simian T-cell leukemia virus (STLV) infection in wild primate populations in Cameroon: evidence for dual STLV type 1 and type 3 infection in agile mangabeys (Cercocebus agilis).

scientific article published on May 2004

Simple algorithm derived from a geno-/phenotypic database to predict HIV-1 protease inhibitor resistance

scientific article published in August 2000

Simultaneous RNA quantification of human and retroviral genomes reveals intact interferon signaling in HTLV-1-infected CD4+ T cell lines

scientific article published on 23 August 2012

Site stripping based on likelihood ratio reduction is a useful tool to evaluate the impact of non-clock-like behavior on viral phylogenetic reconstructions

scientific article published on November 2003

Site-directed mutagenesis of human immunodeficiency virus type 1 reverse transcriptase at amino acid position 138.

scientific article

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference

scientific article published on 16 November 2004

Stabilisation of emulsions using hydrophobically modified inulin (polyfructose)

Standardisation of primers and an algorithm for HIV-1 diagnostic PCR evaluated in patients harbouring strains of diverse geographical origin. The Belgian AIDS Reference Laboratories

scientific article published in February 1995

Stereospecificity of 6'-C-neplanocin A analogues as inhibitors of S-adenosylhomocysteine hydrolase activity and human immunodeficiency virus replication

scientific article published on January 1998

Structural modifications induced by specific HIV-1 protease-compensatory mutations have an impact on the virological response to a first-line lopinavir/ritonavir-containing regimen

scientific article published on 17 May 2013

Sub-Epidemics Explain Localized High Prevalence of Reduced Susceptibility to Rilpivirine in Treatment-Naive HIV-1-Infected Patients: Subtype and Geographic Compartmentalization of Baseline Resistance Mutations

scientific article published on 13 December 2015

Superinfection with drug-resistant HIV is rare and does not contribute substantially to therapy failure in a large European cohort

scientific article

Superior antiviral and antiproliferative activity of IFN-beta vs. IFN-alpha in primary ATL cells occurs downstream of STAT1 signaling.

scientific article published on 7 January 2014

Tempo and mode of human and simian T-lymphotropic virus (HTLV/STLV) evolution revealed by analyses of full-genome sequences

scientific article

Tenofovir resistance and resensitization

scientific article published on November 2003

The 15th International Conference on Human Retroviruses: HTLV and Related Viruses.

scientific article published on 6 June 2011

The Calculated Genetic Barrier for Antiretroviral Drug Resistance Substitutions Is Largely Similar for Different HIV-1 Subtypes

article

The EuResist expert model for customised HAART optimisation: 2010 update and extension to newest compounds.

scientific article published on 8 November 2010

The Fifth European Workshop on Virus Evolution and Molecular Epidemiology, Leuven, Belgium, 30 August to 4 September 1999. Evolving viruses and virologists

scientific article published in January 2000

The characteristics of the HIV subtype B epidemic in Slovenia

article

The close relationship between South African and Latin American HTLV type 1 strains corroborated in a molecular epidemiological study of the HTLV type 1 isolates from a blood donor cohort

scientific article published in April 2007

The demise of multidrug-resistant HIV-1: the national time trend in Portugal

scientific article published on 9 December 2012

The discovery of two new divergent STLVs has implications for the evolution and epidemiology of HTLVs

scientific article

The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates

scientific article (publication date: April 2014)

The genomic structure of a new simian T-lymphotropic virus, STLV-PH969, differs from that of human T-lymphotropic virus types I and II.

scientific article published on February 1996

The global spread of HIV-1 subtype B epidemic

scientific article

The impact of HIV-1 within-host evolution on transmission dynamics

scientific article published on 21 December 2017

The impact of HIV-1 within-host evolution on transmission dynamics

article

The incidence of multidrug and full class resistance in HIV-1 infected patients is decreasing over time (2001-2006) in Portugal

scientific article published on February 2008

The low evolutionary rate of human T-cell lymphotropic virus type-1 confirmed by analysis of vertical transmission chains.

scientific article published on 22 January 2004

The molecular population genetics of HIV-1 group O

scientific article

The origin and evolution of human T-cell lymphotropic virus type II (HTLV-II) and the relationship with its replication strategy

scientific article

The presence of a divergent T-lymphotropic virus in a wild-caught pygmy chimpanzee (Pan paniscus) supports an African origin for the human T-lymphotropic/simian T-lymphotropic group of viruses

scientific article published on May 1996

The rare HIV-1 gp41 mutations 43T and 50V elevate enfuvirtide resistance levels of common enfuvirtide resistance mutations that did not impact susceptibility to sifuvirtide

scientific article published on 21 March 2010

The rise and fall of K65R in a Portuguese HIV-1 Drug Resistance database, despite continuously increasing use of tenofovir

scientific article published on 6 November 2008

The simian T-lymphotropic virus STLV-PP1664 from Pan paniscus is distinctly related to HTLV-2 but differs in genomic organization

scientific article published on April 1998

The simian origins of the pathogenic human T-cell lymphotropic virus type I.

scientific article

The three human T-lymphotropic virus type I subtypes arose from three geographically distinct simian reservoirs

scientific article published in February 1996

Thrombolytic and pharmacokinetic properties of a recombinant chimeric plasminogen activator consisting of a fibrin fragment D-dimer specific humanized monoclonal antibody and a truncated single-chain urokinase

scientific article published on August 3, 1992

Time to Harmonize Dengue Nomenclature and Classification

scientific article published on 18 October 2018

Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach

scientific article published on 20 May 2009

Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology

article

Tracing the origin and history of the HIV-2 epidemic

scientific article

Transmission of HIV Drug Resistance and the Predicted Effect on Current First-line Regimens in Europe

scientific article published on 29 November 2015

Transmission of drug-resistant HIV-1 is stabilizing in Europe

scientific article published in November 2009

Treatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients

scientific article

Trends and predictors of transmitted drug resistance (TDR) and clusters with TDR in a local Belgian HIV-1 epidemic

scientific article (publication date: 2014)

Two new human T-lymphotropic virus type I phylogenetic subtypes in seroindeterminates, a Mbuti pygmy and a Gabonese, have closest relatives among African STLV-I strains

scientific article published in July 1998

U.S. Human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains

scientific article

Understanding the changing prevalence of K65R

article

Updated European recommendations for the clinical use of HIV drug resistance testing

scientific article published in December 2004

Use of Electronic Monitoring Induces a 40-Day Intervention Effect in HIV Patients

article

Use of a generic polymerase chain reaction assay detecting human T-lymphotropic virus (HTLV) types I, II and divergent simian strains in the evaluation of individuals with indeterminate HTLV serology

scientific article published in May 1997

Viral evolution and molecular epidemiology â evolving viruses and evolving analysis techniques

scientific article published on 01 November 2003

Viral phylogeny in court: the unusual case of the Valencian anesthetist

scientific article

Virologic therapy response significantly correlates with the number of active drugs as evaluated using a LiPA HIV-1 resistance scoring system

scientific article published in December 2004

Virus evolution and molecular epidemiology

scholarly article by Anne-Mieke Vandamme published April 2002 in Virus Research

Virus genetic variability involvement in transmissibility of HIV-1 immune activation and disease progression

article

Western blot seroindeterminate individuals for human T-lymphotropic virus I/II (HTLV-I/II) in Fortaleza (Brazil): a serological and molecular diagnostic and epidemiological approach

scientific article published in June 2003

Women in the European Virus Bioinformatics Center

scientific article published on 13 July 2022

Zika genomics urgently need standardized and curated reference sequences

scientific article published on 7 September 2017

env Chimeric Virus Technology for Evaluating Human Immunodeficiency Virus Susceptibility to Entry Inhibitors.

scientific article

env chimeric virus technology for evaluating human immunodeficiency virus susceptibility to entry inhibitors

scientific article

Expertní prohlášení k vědeckým poznatkům o HIV v kontextu trestního práva

book edition published in 2019

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