Search filters

List of works by Tomas Marques-Bonet

<i>Salmonella enterica</i> from a soldier from the 1652 siege of Barcelona (Spain) supports historical transatlantic epidemic contacts

scientific article published on 24 August 2021

A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).

scientific article published on 30 October 2017

A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures ⬇️

scientific article

A Draft Sequence of the Neandertal Genome

scientific article

A burst of segmental duplications in the genome of the African great ape ancestor

scientific article published on February 2009

A comparison of gene expression and DNA methylation patterns across tissues and species

scientific article published on 17 January 2020

A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives

scientific article published in 2021

A global catalog of whole-genome diversity from 233 primate species

A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk

scientific article

A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics.

scientific article published on 23 June 2015

A roadmap for high-throughput sequencing studies of wild animal populations using noninvasive samples and hybridization capture

scientific article published on 01 May 2019

Accelerated exon evolution within primate segmental duplications.

scientific article published on 29 January 2013

Admixture in Mammals and How to Understand Its Functional Implications: On the Abundance of Gene Flow in Mammalian Species, Its Impact on the Genome, and Roads into a Functional Understanding

scientific article published on 30 October 2019

An evolutionary medicine perspective on Neandertal extinction

scientific article published on 16 May 2017

Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability

scientific article published on 29 July 2022

Analysis of structural diversity in wolf-like canids reveals post-domestication variants

scientific article

Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution

scientific article published on 7 October 2007

Ancient admixture from an extinct ape lineage into bonobos

scientific article published on 29 April 2019

Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

scientific article

Ancient gene flow from early modern humans into Eastern Neanderthals

scientific article

Ancient genomic changes associated with domestication of the horse

scientific article

Annotated features of domestic cat - Felis catus genome

scientific article

Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

scientific article published on 01 June 2020

Association Cluster Detector: a tool for heuristic detection of significance clusters in whole-genome scans.

scientific article published in September 2005

Author Correction: Ancient admixture from an extinct ape lineage into bonobos

scientific article published on 01 June 2019

Author Correction: Comparative and demographic analysis of orang-utan genomes

correction of a scholarly article

Author Correction: Direct estimation of mutations in great apes reconciles phylogenetic dating

scientific article published on 01 May 2019

Author Correction: Elephant shark genome provides unique insights into gnathostome evolution

scientific article published on 19 November 2020

Author Correction: Potential damaging mutation in LRP5 from genome sequencing of the first reported chimpanzee with the Chiari malformation.

scientific article

Author Correction: The dental proteome of Homo antecessor

scientific article published on 29 July 2020

Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs

scientific article

Branching out: what omics can tell us about primate evolution

scientific article published on 04 July 2020

Characterization of nuclear mitochondrial insertions in the whole genomes of primates

scientific article published on 16 November 2020

Characterization of six human disease-associated inversion polymorphisms

scientific article published on 21 April 2009

Chimpanzee genomic diversity reveals ancient admixture with bonobos

scientific article published on 27 October 2016

Chromosomal rearrangements and the genomic distribution of gene-expression divergence in humans and chimpanzees

scientific article published in November 2004

Chromosomal rearrangements are associated with higher rates of molecular evolution in mammals

article

Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly

scientific article published on 12 February 2018

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

scientific article

Comparative and demographic analysis of orang-utan genomes

scientific article

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs ⬇️

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

scientific article

Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta)

scientific article published on 11 May 2020

Copy number variation analysis in the great apes reveals species-specific patterns of structural variation

scientific article

Copy number variation and evolution in humans and chimpanzees

scientific article published on 04 September 2008

Copy number variation underlies complex phenotypes in domestic dog breeds and other canids

scientific article

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2.

scientific article published on September 2017

Current advances in primate genomics: novel approaches for understanding evolution and disease

scientific article published in 2023

DNA Methylation: Insights into Human Evolution

scientific article

DNA methylation contributes to natural human variation

scientific article published on August 2013

Death and resurrection of the human IRGM gene

scientific article published in March 2009

Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions

scientific article published on 26 June 2016

Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs

scientific article

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

scientific article

Differential DNA methylation of vocal and facial anatomy genes in modern humans

scientific article published on 04 March 2020

Differential Gene Expression in the Human Brain Is Associated with Conserved, but Not Accelerated, Noncoding Sequences

scientific article

Direct estimation of mutations in great apes reconciles phylogenetic dating

scientific article published on 21 January 2019

Direct estimation of mutations in great apes reveals significant recent human slowdown in the yearly mutation rate

Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories

scientific article published in 2023

Dynamics of DNA methylation in recent human and great ape evolution

scientific article

Elephant shark genome provides unique insights into gnathostome evolution

scientific article (publication date: 9 January 2014)

Enamel proteome shows that Gigantopithecus was an early diverging pongine

scientific article published on 13 November 2019

Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

scholarly article published in GigaScience

Erratum: A burst of segmental duplications in the genome of the African great ape ancestor

scientific article published in Nature

Erratum: Corrigendum: Elephant shark genome provides unique insights into gnathostome evolution

scientific article published in Nature

Evolution and demography of the great apes.

scientific article

Evolution and diversity of copy number variation in the great ape lineage

scientific article published on 03 July 2013

Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse

scientific article published on 22 September 2015

Evolutionary constraint and innovation across hundreds of placental mammals

scientific article published on 28 April 2023

Evolutionary dynamism of the primate LRRC37 gene family

scientific article

Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach

scientific article

Extensive Regulatory Changes in Genes Affecting Vocal and Facial Anatomy Separate Modern from Archaic Humans

article

Extreme differences between human germline and tumor mutation densities are driven by ancestral human-specific deviations

scientific article published on 19 May 2020

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

scientific article

FOXP2 variation in great ape populations offers insight into the evolution of communication skills

scientific article

Frequent appearance of novel protein-coding sequences by frameshift translation

scientific article

Functional Implications of Human-Specific Changes in Great Ape microRNAs

scientific article

Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human

scientific article published on 01 September 2019

Genetic Variation in Pan Species Is Shaped by Demographic History and Harbors Lineage-Specific Functions

scientific article published on 01 April 2019

Genetic data from the extinct giant rat from Tenerife (Canary Islands) points to a recent divergence from mainland relatives

scientific article published in 2021

Genetic history of an archaic hominin group from Denisova Cave in Siberia

scientific article

Genetic variation in Pan species is shaped by demographic history and underlies lineage-specific functions

Genome sequencing highlights the dynamic early history of dogs

scientific article published in January 2014

Genomes reveal marked differences in the adaptive evolution between orangutan species

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

scientific article published on 09 October 2020

Genomic analysis of the blood attributed to Louis XVI (1754-1793), king of France

scientific article

Genomic legacy of the African cheetah, Acinonyx jubatus

scientific article

Genomics reveals introgression and purging of deleterious mutations in the Arabian leopard ( Panthera pardus nimr )

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

article

Giant tortoise genomes provide insights into longevity and age-related disease

scientific article published on 03 December 2018

Gibbon genome and the fast karyotype evolution of small apes

scientific article

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

scientific article

Great ape genetic diversity and population history

scientific article published on 03 July 2013

Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas

scientific article published in January 2019

How genomics can help biodiversity conservation

Human Oocyte-Derived Methylation Differences Persist in the Placenta Revealing Widespread Transient Imprinting.

scientific article

Human pseudogenes of the ABO family show a complex evolutionary dynamics and loss of function

scientific article

Illuminating the function of the orphan transporter, SLC22A10, in humans and other primates

scientific article published in 2024

Inference of natural selection from ancient DNA

scientific article published on 18 March 2020

Insights from the rescue and breeding management of Cuvier's gazelle (<i>Gazella cuvieri</i>) through whole-genome sequencing

scientific article published on 22 February 2022

Insights into hominid evolution from the gorilla genome sequence

scientific article

Insights into mammalian TE diversity through the curation of 248 genome assemblies ⬇️

Integrating gene annotation with orthology inference at scale ⬇️

scientific article published on 28 April 2023

Interrogating 11 Fast-Evolving Genes for Signatures of Recent Positive Selection in Worldwide Human Populations

article

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

article

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

scientific article published on 01 December 2019

Late-replicating CNVs as a source of new genes

scientific article published on 15 December 2013

Late-replicating CNVs as a source of new genes.

scientific article published on 15 March 2014

Limiting replication stress during somatic cell reprogramming reduces genomic instability in induced pluripotent stem cells

scientific article

Lineage-specific evolution of the vertebrate Otopetrin gene family revealed by comparative genomic analyses

scientific article

MHC class I diversity in chimpanzees and bonobos

scientific article published on 16 June 2017

Maximizing the acquisition of unique reads in non-invasive capture sequencing experiments

scientific article published on 20 November 2020

Molecular and cellular reorganization of neural circuits in the human lineage.

scientific article published in November 2017

Molecular dating of caprines using ancient DNA sequences of Myotragus balearicus, an extinct endemic Balearic mammal

scientific article

Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species

erratum

Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species.

scientific article

Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

scientific article

Multiple Genomic Events Altering Hominin SIGLEC Biology and Innate Immunity Predated the Common Ancestor of Humans and Archaic Hominins

scientific article published on 18 June 2020

Murine segmental duplications are hot spots for chromosome and gene evolution

article

Natural Selection in the Great Apes

scientific article

On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees

scientific article

On the path to extinction: Inbreeding and admixture in a declining grey wolf population

scientific article published on 04 September 2018

Origins of De Novo Genes in Human and Chimpanzee

scientific article published on 31 December 2015

Patterns and rates of intron divergence between humans and chimpanzees

scientific article published on January 2007

Personalized copy number and segmental duplication maps using next-generation sequencing.

scientific article

Population dynamics and genetic connectivity in recent chimpanzee history

scientific article published in 2022

Potential damaging mutation in LRP5 from genome sequencing of the first reported chimpanzee with the Chiari malformation

scientific article

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

scientific article

Rates and patterns of great ape retrotransposition

scientific article published on 24 July 2013

Real‐time genomics for One Health

scientific article published in 2023

Reconstructing Denisovan Anatomy Using DNA Methylation Maps

scientific article published on 01 February 2020

Reconstructing Denisovan Anatomy Using DNA Methylation Maps

scientific article published on 01 September 2019

Recovering the genomes hidden in museum wet collections

scientific article published in 2022

Reference genomes for conservation

scientific article published on 22 July 2022

Return to the Sea, Get Huge, Beat Cancer: An Analysis of Cetacean Genomes Including an Assembly for the Humpback Whale (Megaptera novaeangliae)

scientific article published on 01 August 2019

Schizophrenia-associated somatic copy-number variants from 12,834 cases reveal recurrent NRXN1 and ABCB11 disruptions

scientific article published in 2023

Selection in the Introgressed Regions of the Chimpanzee Genome

scientific article published on 4 April 2018

Selection upon genome architecture: conservation of functional neighborhoods with changing genes

scientific article

Selective single molecule sequencing and assembly of a human Y chromosome of African origin

Selective single molecule sequencing and assembly of a human Y chromosome of African origin

scientific article published in Nature Communications

Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

scientific article

Sequencing primate genomes: what have we learned?

scientific article published on January 2009

Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing

scientific article published on 19 December 2017

Somatic mosaicism reveals clonal distributions of neocortical development

scientific article published on 20 April 2022

Somatic mutations in Parkinson disease are enriched in synaptic and neuronal processes

Spatiotemporal transcriptomic divergence across human and macaque brain development

scientific article

Stably expressed APOBEC3H forms a barrier for cross-species transmission of simian immunodeficiency virus of chimpanzee to humans.

scientific article published on 21 December 2017

Standards recommendations for the Earth BioGenome Project

scientific article published on 18 January 2022

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

scientific article published on 19 August 2015

Targeted conservation genetics of the endangered chimpanzee

scientific article published on 28 April 2020

Temporal and spatial expression of CCN genes in zebrafish

scientific article

The Diversity of Primates: From Biomedicine to Conservation Genomics

scientific article published on 16 November 2020

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research

scientific article published on 13 October 2020

The Earth BioGenome Project 2020: Starting the clock

scientific article published on 25 January 2022

The Genomic Footprints of the Fall and Recovery of the Crested Ibis

scientific article published on 10 January 2019

The Novel Evolution of the Sperm Whale Genome

scientific article

The bonobo genome compared with the chimpanzee and human genomes

scientific article

The comparative genomics and complex population history of baboons

scientific article published on 30 January 2019

The contribution of historical processes to contemporary extinction risk in placental mammals ⬇️

The dental proteome of Homo antecessor

scientific article published on 01 April 2020

The era of reference genomes in conservation genomics

scientific article published in March 2022

The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2.

scientific article

The evolution of human segmental duplications and the core duplicon hypothesis

scientific article

The evolutionary history of extinct and living lions

scientific article published on 04 May 2020

The functional and evolutionary impacts of human-specific deletions in conserved elements ⬇️

The genetic impact of an Ebola outbreak on a wild gorilla population

scientific article published on 11 October 2021

The genetics of microdeletion and microduplication syndromes: an update.

scientific article published on 16 April 2014

The genome of melon (Cucumis melo L.).

scientific article

The genome of the vervet (Chlorocebus aethiops sabaeus)

scientific article published on 16 September 2015

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

scientific article

The genomic distribution of intraspecific and interspecific sequence divergence of human segmental duplications relative to human/chimpanzee chromosomal rearrangements

scientific article

The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS

scientific article published in 2021

The impact of endogenous content, replicates and pooling on genome capture from faecal samples

scientific article published on 23 October 2017

The impact of genetic adaptation on chimpanzee subspecies differentiation

scientific article published on 25 November 2019

The interplay between DNA methylation and sequence divergence in recent human evolution.

scientific article

The landscape of tolerated genetic variation in humans and primates

The origins and impact of primate segmental duplications

scientific article

The prion protein gene in humans revisited: lessons from a worldwide resequencing study

scientific article

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

scientific article

Three-dimensional genome rewiring in loci with human accelerated regions ⬇️

scientific article published on 28 April 2023

Towards complete and error-free genome assemblies of all vertebrate species

scientific article

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series.

scientific article published on 2 May 2019

Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

scientific article

Variation in predicted COVID-19 risk among lemurs and lorises

scholarly article by Christian Roos published in 2021

Variation in predicted COVID-19 risk among lemurs and lorises

scholarly article by Lukas Kuderna published in 2021

Whole genome sequencing in the search for genes associated with the control of SIV infection in the Mauritian macaque model.

scientific article

Whole mitochondrial genomes illuminate ancient intercontinental dispersals of grey wolves (Canis lupus )

article

Whole-genome sequence analysis of a Pan African set of samples reveals archaic gene flow from an extinct basal population of modern humans into sub-Saharan populations

article

Worldwide patterns of genomic variation and admixture in gray wolves ⬇️

scientific article

Paulina is supported by:

About Paulina

Help