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List of works by Albert J.R. Heck

16 kDa heat shock protein from heat-inactivated Mycobacterium tuberculosis is a homodimer - suitability for diagnostic applications with specific llama VHH monoclonals

scientific article

3-Hydroxybenzoate 6-Hydroxylase from Rhodococcus jostii RHA1 Contains a Phosphatidylinositol Cofactor

scientific article

A CDK-mediated phosphorylation switch of disordered protein condensation

A Molecular Basis for the Presentation of Phosphorylated Peptides by HLA-B Antigens

scientific article published on 05 December 2016

A Novel Platform for the Potentiation of Therapeutic Antibodies Based on Antigen-Dependent Formation of IgG Hexamers at the Cell Surface

scientific article published on 6 January 2016

A Protein-Based Encapsulation System with Calcium-Controlled Cargo Loading and Detachment

scientific article published on 30 July 2018

A Proteomics Approach to Identify New Putative Cardiac Intercalated Disk Proteins

scientific article

A Protocol on the Use of Titanium Dioxide Chromatography for Phosphoproteomics

scientific article published on 01 January 2011

A System-wide Approach to Monitor Responses to Synergistic BRAF and EGFR Inhibition in Colorectal Cancer Cells

article

A Web Resource for Improved Analysis of AP-MS Protein Interaction Data

scientific article published in May 2013

A case series exploring the human milk polyclonal IgA1 response to repeated SARS-CoV-2 vaccinations by LC–MS based fab profiling

scholarly article published on 15 January 2024

A central role for TFIID in the pluripotent transcription circuitry

scientific article published on 17 March 2013

A chemical proteomics based enrichment technique targeting the interactome of the PDE5 inhibitor PF-4540124.

scientific article published on 13 March 2009

A common origin for the bacterial toxin-antitoxin systems parD and ccd, suggested by analyses of toxin/target and toxin/antitoxin interactions

scientific article published in 2012

A community proposal to integrate proteomics activities in ELIXIR

scientific article

A high-quality catalog of the Drosophila melanogaster proteome

scientific article

A large fraction of HLA class I ligands are proteasome-generated spliced peptides.

scientific article published on 20 October 2016

A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics

scientific article

A mutagenic analysis of the RNase mechanism of the bacterial Kid toxin by mass spectrometry

scientific article

A new perspective on fungal metabolites: identification of bioactive compounds from fungi using zebrafish embryogenesis as read-out

scientific article published on 26 November 2019

A new tool to reveal bacterial signaling mechanisms in antibiotic treatment and resistance

scholarly article by Miao-Hsia Lin published in September 2018

A perspective toward mass spectrometry-based de novo sequencing of endogenous antibodies

A practical guide for the identification of membrane and plasma membrane proteins in human embryonic stem cells and human embryonal carcinoma cells

scientific article published on October 2008

A quest for human and mouse embryonic stem cell-specific proteins.

scientific article published on 6 April 2006

A search for ceramide binding proteins using bifunctional lipid analogs yields CERT-related protein StarD7.

scientific article

A small novel A-kinase anchoring protein (AKAP) that localizes specifically protein kinase A-regulatory subunit I (PKA-RI) to the plasma membrane.

scientific article

A systematic evaluation of protein kinase A-A-kinase anchoring protein interaction motifs.

scientific article

A systems-wide screen identifies substrates of the SCF TrCP ubiquitin ligase

scientific article published on 16 December 2014

A three-way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions

scientific article published in October 2009

A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large.

scientific article

A unique residue in rab3c determines the interaction with novel binding protein Zwint-1.

scientific article

A universal GlycoDesign for lysosomal replacement enzymes to improve circulation time and biodistribution

A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing.

scientific article

A wealth of genotype-specific proteoforms fine-tunes hemoglobin scavenging by haptoglobin

scientific article published on 19 June 2020

ADP competes with FAD binding in putrescine oxidase

scientific article published on 4 August 2008

Accurate molecular weight analysis of histones using FFE and RP-HPLC on monolithic capillary columns

scientific article published in August 2009

Actin from the apicomplexan Neospora caninum (NcACT) has different isoforms in 2D electrophoresis

scientific article published on 06 June 2018

Activation of FoxM1 during G2 requires cyclin A/Cdk-dependent relief of autorepression by the FoxM1 N-terminal domain

scientific article

Activation of Human Monocytes by Colloidal Aluminum Salts

scientific article published on 23 August 2019

Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics

scientific article

Adipocyte p53 coordinates the response to intermittent fasting by regulating adipose tissue immune cell landscape

scientific article published in 2024

Allotype-Specific Glycosylation and Cellular Localization of Human Leukocyte Antigen Class I Proteins

scientific article published on 20 August 2021

Alterations in the cerebellar (Phospho)proteome of a cyclic guanosine monophosphate (cGMP)-dependent protein kinase knockout mouse

scientific article

Aluminum Hydroxide And Aluminum Phosphate Adjuvants Elicit A Different Innate Immune Response

Amyloid-beta-stimulated plasminogen activation by tissue-type plasminogen activator results in processing of neuroendocrine factors

scientific article published in January 2005

An AC-5 cathepsin B-like protease purified from Haemonchus contortus excretory secretory products shows protective antigen potential for lambs

scientific article published on 30 April 2009

An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas.

scientific article

An Integrated Global Analysis of Compartmentalized HRAS Signaling

scientific article published on 01 March 2019

An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics

scientific article published on 01 September 2007

Analysis of Nisin A and Some of Its Variants Using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

article

Analysis of a common cold virus and its subviral particles by gas-phase electrophoretic mobility molecular analysis and native mass spectrometry

scientific article

Analysis of protein-carbohydrate interaction at the lower size limit of the protein part (15-mer peptide) by NMR spectroscopy, electrospray ionization mass spectrometry, and molecular modeling

scientific article published in July 2002

Analysis of protein-protein interaction surfaces using a combination of efficient lysine acetylation and nanoLC-MALDI-MS/MS applied to the E9:Im9 bacteriotoxin--immunity protein complex.

scientific article published on 19 May 2006

Analysis of the cGMP/cAMP interactome using a chemical proteomics approach in mammalian heart tissue validates sphingosine kinase type 1-interacting protein as a genuine and highly abundant AKAP.

scientific article published on June 2006

Analytical approaches for size and mass analysis of large protein assemblies.

scientific article published on January 2014

Analytical utility of mass spectral binning in proteomic experiments by SPectral Immonium Ion Detection (SPIID).

scientific article published on 3 June 2014

Analyzing protein micro-heterogeneity in chicken ovalbumin by high-resolution native mass spectrometry exposes qualitatively and semi-quantitatively 59 proteoforms

scientific article

Applications of stable isotope dimethyl labeling in quantitative proteomics

scientific article published on 27 May 2012

Architecture of a dsDNA viral capsid in complex with its maturation protease

scientific article published on 19 December 2013

Architecture of the Complex Formed by Large and Small Terminase Subunits from Bacteriophage P22.

scientific article

Arginine (Di)methylated Human Leukocyte Antigen Class I Peptides Are Favorably Presented by HLA-B*07.

scientific article published on 8 August 2016

Aspergillus niger Prolyl Endoprotease for Hydrogen-Deuterium Exchange Mass Spectrometry and Protein Structural Studies.

scientific article published on 28 June 2017

Assembly and Mechanical Properties of the Cargo-Free and Cargo-Loaded Bacterial Nanocompartment Encapsulin.

scientific article published on 29 June 2016

Assessing biological variation and protein processing in primary human leukocytes by automated multiplex stable isotope labeling coupled to 2 dimensional peptide separation

scientific article published on 06 May 2009

Assessment of SRM, MRM(3) , and DIA for the targeted analysis of phosphorylation dynamics in non-small cell lung cancer.

scientific article

Assessment of differences in the conformational flexibility of hepatitis B virus core-antigen and e-antigen by hydrogen deuterium exchange-mass spectrometry.

scientific article

Assessment of genome packaging in AAVs using Orbitrap-based charge-detection mass spectrometry

Association of Cell Adhesion Molecules Contactin-6 and Latrophilin-1 Regulates Neuronal Apoptosis

scientific article published on 15 December 2016

At the interface of interaction proteomics and structural biology

scientific article published on 3 June 2010

Atypical behavior in the electron capture induced dissociation of biologically relevant transition metal ion complexes of the peptide hormone oxytocin

Aurora A, MCAK, and Kif18b promote Eg5-independent spindle formation.

scientific article published on 29 June 2016

Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity

scientific article published on 4 June 2008

Axin cancer mutants form nanoaggregates to rewire the Wnt signaling network

scientific article

Bacterial encapsulins as orthogonal compartments for mammalian cell engineering.

scientific article

Benchmarking multiple fragmentation methods on an orbitrap fusion for top-down phospho-proteoform characterization

scientific article published on 08 April 2015

Benchmarking stable isotope labeling based quantitative proteomics

scientific article published on 22 October 2012

Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry

scientific article published on 21 July 2020

Binding of a diphosphorylated-ITAM peptide to spleen tyrosine kinase (Syk) induces distal conformational changes: a hydrogen exchange mass spectrometry study.

scientific article published in July 2005

Biomolecular mass spectrometry related to drug research

Biophysical Characterization and Stability of Modified IgG1 Antibodies with Different Hexamerization Propensities

Boundaries of mass resolution in native mass spectrometry

scientific article published on 04 April 2014

CAMSAPs and nucleation-promoting factors control microtubule release from γ-TuRC

scientific article published in 2024

CD24 tracks divergent pluripotent states in mouse and human cells

scientific article published on 16 June 2015

CTGF/VEGFA-activated fibroblasts promote tumor migration through micro-environmental modulation.

scientific article published on 18 April 2018

Capillary electrophoretic bioanalysis of therapeutically active peptides with UV and mass spectrometric detection after on-capillary preconcentration

scientific article

Carbohydrate chain of ganglioside GM1 as a ligand: identification of the binding strategies of three 15 mer peptides and their divergence from the binding modes of growth-regulatory galectin-1 and cholera toxin

scientific article published in December 2005

Chaperonin CCT checkpoint function in basal transcription factor TFIID assembly

scientific article published on 03 December 2018

Chaperonin complexes monitored by ion mobility mass spectrometry

scientific article published in February 2009

Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF

Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF

Characterization and usage of the EASY-spray technology as part of an online 2D SCX-RP ultra-high pressure system

scientific article published in December 2014

Characterization of a phosphorylated peptide and peptoid and peptoid-peptide hybrids by mass spectrometry.

scientific article published on January 2002

Characterization of biases in phosphopeptide enrichment by Ti(4+)-immobilized metal affinity chromatography and TiO2 using a massive synthetic library and human cell digests

scientific article

Characterization of electron transfer dissociation in the Orbitrap Velos HCD cell

scientific article published on 20 April 2013

Characterization of glyoxalase I (E. coli)-inhibitor interactions by electrospray time-of-flight mass spectrometry and enzyme kinetic analysis.

scientific article

Characterization of high-molecular weight by-products in the production of a trivalent bispecific 2+1 heterodimeric antibody

Charting the Proteoform Landscape of Serum Proteins in Individual Donors by High-Resolution Native Mass Spectrometry

scientific article published in 2022

Charting the interactome of PDE3A in human cells using an IBMX based chemical proteomics approach.

scientific article published on 24 July 2015

Chemical behavior of the gas-phase pentacoordinated carbonium ion, C2H+7

Chemoenzymatic Approach for the Preparation of Asymmetric Bi-, Tri-, and Tetra-Antennary N-Glycans from a Common Precursor

scientific article published on 21 December 2016

Chip-Based Enrichment and NanoLC-MS/MS Analysis of Phosphopeptides from Whole Lysates.

scientific article

Cleavage specificities of the brother and sister proteases Lys-C and Lys-N.

scientific article published on 18 October 2010

Coenzyme binding during catalysis is beneficial for the stability of 4-hydroxyacetophenone monooxygenase

scientific article published on 27 July 2005

Cofactor binding protects flavodoxin against oxidative stress

scientific article

Cofactor-dependent assembly of the flavoenzyme vanillyl-alcohol oxidase.

scientific article published on 9 July 2002

Collagen stimulation of platelets induces a rapid spatial response of cAMP and cGMP signaling scaffolds.

scientific article

Combined infrared multiphoton dissociation and electron-capture dissociation using co-linear and overlapping beams in Fourier transform ion cyclotron resonance mass spectrometry

scientific article published on 01 January 2006

Combining Deep Sequencing, Proteomics, Phosphoproteomics, and Functional Screens To Discover Novel Regulators of Sphingolipid Homeostasis

scientific article published on 29 November 2016

Comparative assessment of site assignments in CID and electron transfer dissociation spectra of phosphopeptides discloses limited relocation of phosphate groups

scientific article

Comparative gas-phase activation of two similar non-covalent heptameric protein complexes: gp31 and GroES

article

Comparative multiplexed mass spectrometric analyses of endogenously expressed yeast nuclear and cytoplasmic exosomes.

scientific article

Comparative phosphoproteomic analysis of checkpoint recovery identifies new regulators of the DNA damage response.

scientific article published on 23 April 2013

Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos

scientific article published on 11 June 2008

Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes

scientific article published on October 2008

Comparative proteome analysis of Saccharomyces cerevisiae grown in chemostat cultures limited for glucose or ethanol

scientific article published on 23 October 2004

Comparative proteome analysis to explore p53 pathway disruption in head and neck carcinogenesis

scientific article published on 13 May 2009

Complement is activated by IgG hexamers assembled at the cell surface

scientific article

Complex mixtures of antibodies generated from a single production qualitatively and quantitatively evaluated by native Orbitrap mass spectrometry

scientific article published on January 2014

Comprehensive Proteoform Characterization of Plasma Complement Component C8αβγ by Hybrid Mass Spectrometry Approaches.

scientific article published on 12 March 2018

Comprehensive analysis of the secreted proteins of the parasite Haemonchus contortus reveals extensive sequence variation and differential immune recognition

scientific article

Conformational isomers of calcineurin follow distinct dissociation pathways

scientific article

Conformational landscape and pathway of disulfide bond reduction of human alpha defensin.

scientific article published on 27 May 2015

Connecting color with assembly in the fluorescent B-phycoerythrin protein complex.

scientific article

Control of epithelial cell migration and invasion by the IKKβ- and CK1α-mediated degradation of RAPGEF2.

scientific article published on 27 November 2013

Cooperative induction of apoptosis in NRAS mutant melanoma by inhibition of MEK and ROCK.

scientific article

Copper and iron interactions with angiotensin-converting enzyme inhibitors. A study by fast-atom bombardment tandem mass spectrometry

scientific article published on 01 June 1999

Correction: The Leukemia-Associated Mllt10/Af10-Dot1l Are Tcf4/β-Catenin Coactivators Essential for Intestinal Homeostasis

scientific article published on 7 February 2017

Coupled activation and degradation of eEF2K regulates protein synthesis in response to genotoxic stress

scientific article published on 05 June 2012

Covalent and non-covalent dissociations of gas-phase complexes of avoparcin and bacterial receptor mimicking precursor peptides studied by collisionally activated decomposition mass spectrometry

scientific article published on 01 August 1999

Covalent flavinylation of vanillyl-alcohol oxidase is an autocatalytic process

scientific article

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

scientific article

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

scientific article published on 28 February 2012

Crosstalk between phosphorylation and O-GlcNAcylation: friend or foe

scientific article published on 13 May 2018

Crystal Structure of Bovine CD1b3 with Endogenously Bound Ligands

scientific article

Crystal structure of human CD1e reveals a groove suited for lipid-exchange processes

scientific article

Cultivation of Podospora anserina on soybean hulls results in an efficient enzyme cocktail for plant biomass hydrolysis

scientific article

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

scientific article

DAZL limits pluripotency, differentiation, and apoptosis in developing primordial germ cells

scientific article

DAZL regulates Tet1 translation in murine embryonic stem cells

scientific article published on 15 June 2015

Daily rhythms in the cyanobacterium synechococcus elongatus probed by high-resolution mass spectrometry-based proteomics reveals a small defined set of cyclic proteins.

scientific article published on 27 March 2014

Database independent proteomics analysis of the ostrich and human proteome.

scientific article published on 22 December 2011

Datasets from an interaction proteomics screen for substrates of the SCF(βTrCP) ubiquitin ligase

scientific article published on 10 June 2015

De novo discovery of phenotypic intratumour heterogeneity using imaging mass spectrometry.

scientific article

Decharging of globular proteins and protein complexes in electrospray

scientific article published in January 2005

Deciphering the Interplay among Multisite Phosphorylation, Interaction Dynamics, and Conformational Transitions in a Tripartite Protein System.

scientific article published on 10 June 2016

Deciphering the molecular mechanisms underlying sea urchin reversible adhesion: A quantitative proteomics approach

scientific article published on 26 February 2016

Deconvolution of overlapping isotopic clusters improves quantification of stable isotope-labeled peptides.

scientific article published on 15 May 2011

Deep Proteome Profiling of Circulating Granulocytes Reveals Bactericidal/Permeability-Increasing Protein as a Biomarker for Severe Atherosclerotic Coronary Stenosis

Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity.

scientific article

Defeating major contaminants in Fe3+-IMAC phosphopeptide enrichment.

scientific article published on 15 February 2018

Defining the stoichiometry and cargo load of viral and bacterial nanoparticles by Orbitrap mass spectrometry

scientific article published on 7 May 2014

Degradation of Tiam1 by casein kinase 1 and the SCFβTrCP ubiquitin ligase controls the duration of mTOR-S6K signaling

scientific article published on 14 August 2014

Deletion of flbA results in increased secretome complexity and reduced secretion heterogeneity in colonies of Aspergillus niger

scientific article published on 22 March 2013

Detailed mass analysis of structural heterogeneity in monoclonal antibodies using native mass spectrometry

article

Determination of stoichiometry and conformational changes in the first step of the P22 tail assembly

scientific article published on 15 February 2008

Determination of structural and functional overlap/divergence of five proto-type galectins by analysis of the growth-regulatory interaction with ganglioside GM1 in silico and in vitro on human neuroblastoma cells

scientific article published on March 2005

Determination of the Stability of the Noncovalent Phospholipid Transfer Protein−Lipid Complex by Electrospray Time-of-Flight Mass Spectrometry

scientific article published on 01 June 2002

Determining protein concentrations of the human ventricular proteome

scientific article published in January 2013

Development of a novel chemical probe for the selective enrichment of phosphorylated serine- and threonine-containing peptides

scientific article published in December 2005

Diet-induced neuropeptide expression: feasibility of quantifying extended and highly charged endogenous peptide sequences by selected reaction monitoring

scientific article published on 16 September 2015

Differential Proteomics Identifies Protein Biomarkers That Predict Local Relapse of Head and Neck Squamous Cell Carcinomas

scientific article published on 01 December 2009

Differential oxidation of protein-tyrosine phosphatases.

scientific article

Differential targeting of two distinct SWI/SNF-related Drosophila chromatin-remodeling complexes

scientific article

Dimethyl isotope labeling assisted de novo peptide sequencing ⬇️

scientific article published on August 21, 2010

Direct Monitoring of Protein O-GlcNAcylation by High-Resolution Native Mass Spectrometry

scientific article published on 13 June 2017

Direct quality control of glycoengineered erythropoietin variants

scientific article published in Nature Communications

Dis3-like 1: a novel exoribonuclease associated with the human exosome

scientific article

Discovery and quantification of non-human proteins in human milk

scientific article published on 12 December 2018

Discrepancies between High-Resolution Native and Glycopeptide-Centric Mass Spectrometric Approaches: A Case Study into the Glycosylation of Erythropoietin Variants

scientific article published on 4 August 2021

Dissecting ribosomal particles throughout the kingdoms of life using advanced hybrid mass spectrometry methods.

scientific article published on 27 June 2018

Distinct Stabilities of the Structurally Homologous Heptameric Co-Chaperonins GroES and gp31

scientific article published on 07 May 2018

Distinct conformational stability and functional activity of four highly homologous endonuclease colicins

scientific article published on May 2004

Disulfide bond cleavages observed in SORI-CID of three nonapeptides complexed with divalent transition-metal cations.

scientific article published in April 2007

Diversity of cAMP-Dependent Protein Kinase Isoforms and Their Anchoring Proteins in Mouse Ventricular Tissue

scientific article published on 14 April 2007

Does double electron capture lead to the formation of biradicals? An ECD-SORI-CID study on lacticin 481.

scientific article published in October 2005

Double standards in quantitative proteomics: direct comparative assessment of difference in gel electrophoresis and metabolic stable isotope labeling.

scientific article

Doxorubicin-induced DNA damage causes extensive ubiquitination of ribosomal proteins associated with a decrease in protein translation.

scientific article published on 8 February 2018

Dynamic remodelling of the human host cell proteome and phosphoproteome upon enterovirus infection

scientific article published on 28 August 2020

EGFR Dynamics Change during Activation in Native Membranes as Revealed by NMR.

scientific article published on 9 November 2016

Editorial and Review: 31st ASMS Asilomar Conference on Native Mass Spectrometry-Based Structural Biology

scientific article published on 28 November 2016

Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation.

scientific article

Effects of acetylation and phosphorylation on subunit interactions in three large eukaryotic complexes

scientific article published on 04 September 2018

Efficient IgM assembly and secretion require the plasma cell induced endoplasmic reticulum protein pERp1

scientific journal article

Efficient and robust proteome-wide approaches for cross-linking mass spectrometry

scientific article published on 01 December 2018

Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice

scientific article

Electron Capture Dissociation as Structural Probe for Noncovalent Gas-Phase Protein Assemblies

scientific article published on 01 October 2006

Electron capture dissociation at low temperatures reveals selective dissociations

scientific article published on 01 December 2004

Electron-capture-induced decomposition of the supposed ethane dication

Electrospray ionization mass spectrometry as a tool to analyze hydrogen/deuterium exchange kinetics of transmembrane peptides in lipid bilayers.

scholarly article

Elevated levels of fibrinogen-derived endogenous citrullinated peptides in synovial fluid of rheumatoid arthritis patients

scientific article

Elucidating Fibroblast Growth Factor-induced kinome dynamics using targeted mass spectrometry and dynamic modeling

Elucidating crosstalk mechanisms between phosphorylation and O-GlcNAcylation

scientific article published on 14 August 2017

Embryonic stem cell proteomics

scientific article published on August 2006

Encapsulation of phthalocyanine supramolecular stacks into virus-like particles.

scientific article published on 20 April 2011

Endogenous phosphatidylcholine and a long spacer ligand stabilize the lipid-binding groove of CD1b

scientific article

Endogenous phosphotyrosine signaling in zebrafish embryos

scientific article published on 14 August 2007

Enhanced luminescence of Ag nanoclusters via surface modification

scientific article published on 28 January 2013

Enhancing Accuracy in Molecular Weight Determination of Highly Heterogeneously Glycosylated Proteins by Native Tandem Mass Spectrometry

scientific article published on 6 April 2017

Enhancing Top-Down Analysis Using Chromophore-Assisted Infrared Multiphoton Dissociation from (Phospho)peptides to Protein Assemblies

scientific article published on 12 November 2020

Enhancing the Identification of Phosphopeptides from Putative Basophilic Kinase Substrates Using Ti (IV) Based IMAC Enrichment.

scientific article published in September 2013

Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment

scientific article

Epitope-distal effects accompany the binding of two distinct antibodies to hepatitis B virus capsids.

scientific article published on 18 April 2013

Erratum: Corrigendum: Genome-wide characterization of the routes to pluripotency

scientific article published in Nature

Erratum: Interrogating viral capsid assembly with ion mobility–mass spectrometry

article

Erratum: Microtubule minus-end regulation at spindle poles by an ASPM-katanin complex

scientific article published in June 2017

Essential enrichment strategies in phosphoproteomics

scientific article published on January 2006

Evaluating experimental bias and completeness in comparative phosphoproteomics analysis.

scientific article

Evaluating the promiscuous nature of tyrosine kinase inhibitors assessed in A431 epidermoid carcinoma cells by both chemical- and phosphoproteomics.

scientific article published on 14 May 2014

Evaluation and Optimization of ZIC-HILIC-RP as an Alternative MudPIT Strategy

article by Paul J. Boersema et al published March 2007 in Journal of Proteome Research

Evaluation of cornulin, keratin 4, keratin 13 expression and grade of dysplasia for predicting malignant progression of oral leukoplakia

article

Evaluation of metalloendopeptidase Lys-N protease performance under different sample handling conditions

scientific article published in August 2010

Evaluation of the Deuterium Isotope Effect in Zwitterionic Hydrophilic Interaction Liquid Chromatography Separations for Implementation in a Quantitative Proteomic Approach

scientific article published on 30 September 2011

Evidence of noncovalent dimerization of calmodulin

article

Examining the Heterogeneous Genome Content of Multipartite Viruses BMV and CCMV by Native Mass Spectrometry.

scientific article

Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD).

scientific article published on 10 March 2014

Expanding the mass range for UVPD-based native top-down mass spectrometry

scientific article published on 01 July 2019

Expanding the structural analysis capabilities on an Orbitrap-based mass spectrometer for large macromolecular complexes.

scientific article published on 15 November 2017

Exploring ECD on a Benchtop Q Exactive Orbitrap Mass Spectrometer.

scientific article published on 18 December 2017

Exploring an Orbitrap Analyzer for the Characterization of Intact Antibodies by Native Mass Spectrometry

scientific article published on 22 November 2012

Exploring new proteome space: combining Lys-N proteolytic digestion and strong cation exchange (SCX) separation in peptide-centric MS-driven proteomics

scientific article published in January 2011

Exploring the human leukocyte phosphoproteome using a microfluidic reversed-phase-TiO2-reversed-phase high-performance liquid chromatography phosphochip coupled to a quadrupole time-of-flight mass spectrometer

scientific article

Exploring the membrane proteome--challenges and analytical strategies.

scientific article published on 21 January 2010

Expression clustering reveals detailed co-expression patterns of functionally related proteins during B cell differentiation: a proteomic study using a combination of one-dimensional gel electrophoresis, LC-MS/MS, and stable isotope labeling by amin

scientific article published on 15 June 2005

Extended O-GlcNAc on HLA Class-I-Bound Peptides.

scientific article

F-actin asymmetry and the endoplasmic reticulum-associated TCC-1 protein contribute to stereotypic spindle movements in the Caenorhabditis elegans embryo

scientific article

Facilitating identification of minimal protein binding domains by cross-linking mass spectrometry

scientific article published on 18 October 2017

Facilitating protein disulfide mapping by a combination of pepsin digestion, electron transfer higher energy dissociation (EThcD), and a dedicated search algorithm SlinkS.

scientific article published on 30 June 2014

Fasting improves therapeutic response in hepatocellular carcinoma through p53-dependent metabolic synergism

scientific article published on 21 January 2022

Feeder-Free Monolayer Cultures of Human Embryonic Stem Cells Express an Epithelial Plasma Membrane Protein Profile

article

Finding the same needles in the haystack? A comparison of phosphotyrosine peptides enriched by immuno-affinity precipitation and metal-based affinity chromatography

scientific article published on 3 August 2013

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

scientific article published on 22 May 2019

Fishing for newly synthesized proteins with phosphonate-handles

scientific article published on 26 June 2020

Flexibility in crosstalk between H2B ubiquitination and H3 methylation in vivo

scientific article published on 20 August 2014

Fluctuations in histone H4 isoforms during cellular reprogramming monitored by middle-down proteomics.

scientific article published on 17 June 2015

Formation and efficacy of vancomycin group glycopeptide antibiotic stereoisomers studied by capillary electrophoresis and bioaffinity mass spectrometry.

scientific article

Frequency chasing of individual megadalton ions in an Orbitrap analyser improves precision of analysis in single-molecule mass spectrometry

From the Human Genome to the Human Proteome

scientific article published on 30 July 2014

Fully automated isotopic dimethyl labeling and phosphopeptide enrichment using a microfluidic HPLC phosphochip

scientific article published on 14 September 2012

Functional Impact of the N-terminal Arm of Proline Dehydrogenase from Thermus thermophilus.

scientific article published on 16 January 2018

Functional diversification of hybridoma-produced antibodies by CRISPR/HDR genomic engineering

scientific article published on 28 August 2019

GATA-1 forms distinct activating and repressive complexes in erythroid cells

scientific article

GMP synthetase stimulates histone H2B deubiquitylation by the epigenetic silencer USP7

scientific article (publication date: 4 March 2005)

Gaining Confidence in the Elusive Histidine Phosphoproteome

scientific article published on 23 April 2019

Gaining efficiency by parallel quantification and identification of iTRAQ-labeled peptides using HCD and decision tree guided CID/ETD on an LTQ Orbitrap.

scientific article

Gaining weight in structural biology: Applications of mass spectrometry in protein science.

scientific article published on August 2015

Galactonolactone dehydrogenase requires a redox-sensitive thiol for optimal production of vitamin C.

scientific article published on 15 April 2009

Game-theory-based search engine to automate the mass assignment in complex native electrospray mass spectra.

scientific article published on 18 November 2013

Gas phase bimolecular chemistry of isomeric C3H6Br+ cations

scientific article published on 01 January 1995

Gas-phase dissociation of hemoglobin

article

Genome-wide characterization of the routes to pluripotency.

scientific article published on December 2014

Getting closer to the real bacterial cell wall target: biomolecular interactions of water-soluble lipid II with glycopeptide antibiotics

scientific article published in April 2003

Glycoproteoform Profiles of Individual Patients' Plasma Alpha-1-Antichymotrypsin are Unique and Extensively Remodeled Following a Septic Episode

scientific article published on 14 January 2021

Glycoproteogenomics: a frequent gene polymorphism affects the glycosylation pattern of the human serum fetuin/α-2-HS-glycoprotein

article

Glycoproteomics: A Balance between High-Throughput and In-Depth Analysis.

scientific article published on 17 May 2017

Guest encapsulation and self-assembly of molecular capsules in polar solvents via multiple ionic interactions

scientific article published in June 2002

HAP40 orchestrates huntingtin structure for differential interaction with polyglutamine expanded exon 1

preprint

HLA Class II Presentation Is Specifically Altered at Elevated Temperatures in the B-Lymphoblastic Cell Line JY

scientific article published on 29 April 2021

HLA-B and cysteinylated ligands distinguish the antigen presentation landscape of extracellular vesicles

scientific article published on 01 July 2021

Heterologous expression reveals distinct enzymatic activities of two DOT1 histone methyltransferases of Trypanosoma brucei

scientific article published on December 2010

High precision platelet releasate definition by quantitative reversed protein profiling--brief report

scientific article published on 2 May 2013

High-Resolution Native Mass Spectrometry

High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells

scientific article published on 01 August 2020

High-Throughput Assessment of Kinome-wide Activation States

scientific article published on 11 September 2019

High-fidelity mass analysis unveils heterogeneity in intact ribosomal particles

scientific article published on 23 January 2017

High-resolution mapping of prostaglandin E2-dependent signaling networks identifies a constitutively active PKA signaling node in CD8+CD45RO+ T cells

scientific article published on 17 June 2010

High-resolution mass spectrometry of viral assemblies: molecular composition and stability of dimorphic hepatitis B virus capsids.

scholarly article

High-sensitivity Orbitrap mass analysis of intact macromolecular assemblies

article

Higher-Order Assembly of BRCC36-KIAA0157 Is Required for DUB Activity and Biological Function. ⬇️

scientific article

Highly Efficient Depletion Strategy for the Two Most Abundant Erythrocyte Soluble Proteins Improves Proteome Coverage Dramatically

scientific article published on 22 May 2008

Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

scientific article published on 23 November 2007

Histidine phosphorylation in human cells; a needle or phantom in the haystack?

Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei

scientific article published on 18 July 2018

Human CD62Ldim neutrophils identified as a separate subset by proteome profiling and in vivo pulse-chase labeling.

scientific article published on 17 May 2017

Human Ccr4-Not complexes contain variable deadenylase subunits

scientific article

Human plasma IgG1 repertoires are simple, unique, and dynamic

Huntingtin structure is orchestrated by HAP40 and shows a polyglutamine expansion-specific interaction with exon 1

scientific article published on 08 December 2021

Huntingtin-associated protein 1 (HAP1) is a cGMP-dependent kinase anchoring protein (GKAP) specific for the cGMP-dependent protein kinase Iβ isoform.

scientific article

Hybrid mass spectrometry approaches in glycoprotein analysis and their usage in scoring biosimilarity

scientific article published on 8 November 2016

Hydrophilic interaction liquid chromatography (HILIC) in proteomics.

scientific article published on 09 February 2008

Hydroquinone dioxygenase from pseudomonas fluorescens ACB: a novel member of the family of nonheme-iron(II)-dependent dioxygenases

scientific article

Identification of CMTM6 and CMTM4 as PD-L1 protein regulators.

scientific article

Identification of Pep4p as the protease responsible for formation of the SAGA-related SLIK protein complex

scientific article published on 24 May 2010

Identification of a tumor-specific allo-HLA-restricted γδTCR

scientific article published on 01 October 2019

Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes

scientific article published in March 2010

Identification of common and distinct origins of human serum and breastmilk IgA1 by mass spectrometry-based clonal profiling

Identification of differentially expressed peptides in high-throughput proteomics data.

scientific article

Identification of enriched PTM crosstalk motifs from large-scale experimental data sets.

scientific article

Identification of host factors involved in coronavirus replication by quantitative proteomics analysis

scientific article published on 6 December 2010

Identification of proteins in activated human neutrophils susceptible to tyrosyl radical attack. A proteomic study using a tyrosylating fluorophore

scientific article

Identification of putative substrates for the periplasmic chaperone YfgM in Escherichia coli using quantitative proteomics

scientific article published on 17 November 2014

Identification of secreted cysteine proteases from the parasitic nematode Haemonchus contortus detected by biotinylated inhibitors.

scientific article published on March 2006

Identifying glycation hot-spots in bovine milk proteins during production and storage of skim milk powder

Imaging mass spectrometry-based molecular histology differentiates microscopically identical and heterogeneous tumors

scientific article

Imatinib-dependent tyrosine phosphorylation profiling of Bcr-Abl-positive chronic myeloid leukemia cells.

scientific article published on 27 August 2012

Implementation of Ultraviolet Photodissociation on a Benchtop Q Exactive Mass Spectrometer and Its Application to Phosphoproteomics

scientific article published on 29 January 2016

Improved identification of endogenous peptides from murine nervous tissue by multiplexed peptide extraction methods and multiplexed mass spectrometric analysis

scientific article published in February 2009

Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.

scientific article published on April 2011

Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.

scientific article

Improving the Performance of a Quadrupole Time-of-Flight Instrument for Macromolecular Mass Spectrometry

article

In vivo phosphoproteomics reveals kinase activity profiles that predict treatment outcome in triple-negative breast cancer

scientific article published in Nature Communications

In vivo profiling and visualization of cellular protein-lipid interactions using bifunctional fatty acids.

scientific article published on 28 February 2013

In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition

scientific article

In-depth profiling of post-translational modifications on the related transcription factor complexes TFIID and SAGA.

scientific article

In-depth qualitative and quantitative analysis of composite glycosylation profiles and other micro-heterogeneity on intact monoclonal antibodies by high-resolution native mass spectrometry using a modified Orbitrap

scientific article published on 28 August 2013

In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling

scientific article

In-gel isoelectric focusing of peptides as a tool for improved protein identification

scientific article published in July 2006

In-house construction of a UHPLC system enabling the identification of over 4000 protein groups in a single analysis

scientific article published on 25 June 2012

Inheritance of the Golgi Apparatus and Cytokinesis Are Controlled by Degradation of GBF1

scientific article published on 01 June 2018

Inhibition of the integrated stress response by viral proteins that block p-eIF2-eIF2B association

scientific article published on 20 July 2020

Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction.

scientific article published on 13 January 2014

Integrated Proteomics Unveils Nuclear PDE3A2 as a Regulator of Cardiac Myocyte Hypertrophy

Inter-ring communication allows the GroEL chaperonin complex to distinguish between different substrates.

scientific article published on May 2007

Interaction of the K+ channel KcsA with membrane phospholipids as studied by ESI mass spectrometry

scientific article published in April 2003

Interactions between the toxin Kid of the bacterial parD system and the antitoxins Kis and MazE.

scientific article published in April 2007

Interactions of Kid-Kis toxin-antitoxin complexes with the parD operator-promoter region of plasmid R1 are piloted by the Kis antitoxin and tuned by the stoichiometry of Kid-Kis oligomers.

scientific article published on 21 February 2007

Interactions of α- and β-avoparcin with bacterial cell-wall receptor-mimicking peptides studied by electrospray ionization mass spectrometry

scientific article published on 01 November 1999

Interfacial positioning and stability of transmembrane peptides in lipid bilayers studied by combining hydrogen/deuterium exchange and mass spectrometry

scientific article published on 2 July 2001

Interpreting the charge state assignment in electrospray mass spectra of bioparticles

scientific article

Interrogating cAMP-dependent kinase signaling in Jurkat T cells via a protein kinase A targeted immune-precipitation phosphoproteomics approach.

scientific article

Interrogating the architecture of protein assemblies and protein interaction networks by cross-linking mass spectrometry.

scientific article

Interrogating viral capsid assembly with ion mobility-mass spectrometry

scientific article

Investigating the dynamic nature of the interactions between nuclear proteins and histones upon DNA damage using an immobilized peptide chemical proteomics approach

scientific article published on September 2006

Investigating the role of FGF-2 in stem cell maintenance by global phosphoproteomics profiling.

scientific article published on 23 August 2011

Investigation of intact protein complexes by mass spectrometry.

scientific article published in September 2004

Investigation of the ligand spectrum of human sterol carrier protein 2 using a direct mass spectrometry assay

scientific article

Ion mobility mass spectrometry of proteins and protein assemblies.

scientific article

Juxtaposition of Bub1 and Cdc20 on phosphorylated Mad1 during catalytic mitotic checkpoint complex assembly

Juxtaposition of Bub1 and Cdc20 on phosphorylated Mad1 during catalytic mitotic checkpoint complex assembly

Kinesin-4 KIF21B is a potent microtubule pausing factor.

scientific article published on 14 March 2017

Label-free targeted LC-ESI-MS2 analysis of human milk oligosaccharides (HMOS) and related human milk groups with enhanced structural selectivity

scientific article published on 16 November 2018

Label-free visual proteomics: Coupling MS- and EM-based approaches in structural biology

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

Ligand-induced changes in the conformational dynamics of a bacterial cytotoxic endonuclease

scientific article published in April 2004

Lipase active-site-directed anchoring of organometallics: metallopincer/protein hybrids

scientific article

Lipid II is an intrinsic component of the pore induced by nisin in bacterial membranes

scientific article published on 26 March 2003

Localization of intramolecular monosulfide bridges in lantibiotics determined with electron capture induced dissociation

scientific article published in July 2003

Loss of CRMP2 O-GlcNAcylation leads to reduced novel object recognition performance in mice

scientific article published on 27 November 2019

Loss of Protein Phosphatase 1 Regulatory Subunit PPP1R3A Promotes Atrial Fibrillation

scientific article published on 12 June 2019

Low pH-induced conformational change and dimerization of sortilin triggers endocytosed ligand release.

scientific article published on 22 November 2017

Low pressure ion/molecule clustering reactions towards cationic dimers

article

Lung proteome alterations in a mouse model for nonallergic asthma.

scientific article

Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach

scientific article

LysNDeNovo: an algorithm enabling de novo sequencing of Lys-N generated peptides fragmented by electron transfer dissociation

scientific article published in March 2010

Lysine conjugation properties in human IgGs studied by integrating high-resolution native mass spectrometry and bottom-up proteomics

scientific article published on 29 April 2015

MAP3K1 functionally interacts with Axin1 in the canonical Wnt signalling pathway.

scientific article

MICAL3 Flavoprotein Monooxygenase Forms a Complex with Centralspindlin and Regulates Cytokinesis

scientific article

MRPS36 provides a missing link in the eukaryotic 2-oxoglutarate dehydrogenase complex for recruitment of E3 to the E2 core

MRPS36 provides a structural link in the eukaryotic 2-oxoglutarate dehydrogenase complex

scientific article published in 2023

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics

scientific article published on January 2010

Macromolecular assembly of Helicobacter pylori urease investigated by mass spectrometry.

scientific article published in March 2003

Macromolecular mass spectrometry and electron microscopy as complementary tools for investigation of the heterogeneity of bacteriophage portal assemblies

scientific article published on 19 September 2006

Malignant tissues produce divergent antibody glycosylation of relevance for cancer gene therapy effectiveness

scientific article published on 09 July 2020

Mapping of citrullinated fibrinogen B-cell epitopes in rheumatoid arthritis by imaging surface plasmon resonance

scientific article published on 23 December 2010

Mass Spectrometric Analysis of theSchistosomamansoniTegumental Sub-proteome

article

Mass Spectrometry-Based Structural Virology

scientific article published on 04 December 2020

Mass spectrometric analysis of intact human monoclonal antibody aggregates fractionated by size-exclusion chromatography.

scientific article

Mass spectrometric analysis of intact macromolecular chaperone complexes

scholarly article by Esther van Duijn & Albert J.R. Heck published March 2006 in Drug discovery today. Technologies

Mass spectrometry-based quantitative proteomics.

scientific article

Meeting Report on the 7th World Congress of the Human Proteome Organization (HUPO) in Amsterdam

article

Meta-heterogeneity: evaluating and describing the diversity in glycosylation between sites on the same glycoprotein

scientific article published on 31 July 2020

Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics

scientific article published on 13 July 2003

Metal binding of Lissoclinum patella metabolites. Part 1: Patellamides A, C and ulithiacyclamide A

Metal binding of Lissoclinum patella metabolites. Part 2: Lissoclinamides 9 and 10

Metal induced selectivity in phosphate ion binding in E9 DNase.

scientific article

Metastable ion formation and disparate charge separation in the gas-phase dissection of protein assemblies studied by orthogonal time-of-flight mass spectrometry

scientific article

Microtubule minus-end regulation at spindle poles by an ASPM-katanin complex

scientific article

Microtubule minus-end stabilization by polymerization-driven CAMSAP deposition

scientific article published on 30 January 2014

Mild Acid Elution and MHC Immunoaffinity Chromatography Reveal Similar Albeit Not Identical Profiles of the HLA Class I Immunopeptidome

scientific article published on 03 November 2020

Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE).

scientific article published in June 2018

Missing regions within the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative structural modeling

scientific article published on 10 January 2020

Mitochondrial CaMKII causes adverse metabolic reprogramming and dilated cardiomyopathy

scientific article published on 04 September 2020

Mix and match of the tumor metastasis suppressor Nm23 protein isoforms in vitro and in vivo.

scientific article

Mixed-bed ion exchange chromatography employing a salt-free pH gradient for improved sensitivity and compatibility in MudPIT.

scientific article published on 2 July 2013

Mode of action of cGMP-dependent protein kinase-specific inhibitors probed by photoaffinity cross-linking mass spectrometry.

scientific article published on 15 April 2009

Modern biomolecular mass spectrometry and its role in studying virus structure, dynamics, and assembly.

scientific article published on 26 July 2011

Modification and inhibition of vancomycin group antibiotics by formaldehyde and acetaldehyde

scientific article published in January 2001

Molecular Basis of Assembly and Activation of Complement Component C1 in Complex with Immunoglobulin G1 and Antigen

scientific article published on 15 June 2016

Molecular Basis of Transcription-Coupled Pre-mRNA Capping

scientific article published on 7 May 2015

Molecular Reaction Dynamics Using Ion Imaging and Mass Spectrometry*

article

Molecular basis of Rrn3-regulated RNA polymerase I initiation and cell growth

scientific article

Monitoring light/dark association dynamics of multi-protein complexes in cyanobacteria using size exclusion chromatography-based proteomics.

scientific article published on 29 April 2016

Monitoring macromolecular complexes involved in the chaperonin-assisted protein folding cycle by mass spectrometry

article

Monitoring the interaction between β2-microglobulin and the molecular chaperone αB-crystallin by NMR and mass spectrometry: αB-crystallin dissociates β2-microglobulin oligomers.

scientific article published on 03 May 2013

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

scientific article published in January 2009

Multiplexed proteomics mapping of yeast RNA polymerase II and III allows near-complete sequence coverage and reveals several novel phosphorylation sites

scientific article published on 17 April 2008

Multisite Phosphorylation of NuMA-Related LIN-5 Controls Mitotic Spindle Positioning in C. elegans

scientific article

Munc13-4 is an effector of rab27a and controls secretion of lysosomes in hematopoietic cells

scientific article

NF-κB-Independent Role of IKKα/IKKβ in Preventing RIPK1 Kinase-Dependent Apoptotic and Necroptotic Cell Death during TNF Signaling.

scientific article published on 2 September 2015

NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods

scientific article published on 07 October 2019

Native Mass Spectrometry: What is in the Name?

scientific article published on December 2016

Native Structural and Functional Proteoform Characterization of the Prolyl-Alanyl-Specific Endoprotease EndoPro from <i>Aspergillus niger</i>

scientific article published on 13 September 2021

Native mass spectrometry provides direct evidence for DNA mismatch-induced regulation of asymmetric nucleotide binding in mismatch repair protein MutS.

scientific article

Native protein mass spectrometry: from intact oligomers to functional machineries.

scientific article published in October 2004

Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in clustered-regularly-interspaced shot-palindromic-repeats (CRISPR)-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa

scientific article

Natural products triptolide, celastrol, and withaferin A inhibit the chaperone activity of peroxiredoxin I.

scientific article published on 19 May 2015

Neuron specific Rab4 effector GRASP-1 coordinates membrane specialization and maturation of recycling endosomes

scientific journal article

Neutrophil myeloperoxidase harbors distinct site-specific peculiarities in its glycosylation

scientific article published on 12 November 2019

Next-generation proteomics: towards an integrative view of proteome dynamics.

scientific article

Non-covalent synthesis of calix[4]arene-capped porphyrins in polar solvents via ionic interactions

article published in 2002

Normal Alpha-1-Antitrypsin Variants Display in Serum Allele-Specific Protein Levels

Norwalk virus assembly and stability monitored by mass spectrometry.

scientific article

Novel identified aluminum hydroxide-induced pathways prove monocyte activation and pro-inflammatory preparedness.

scientific article published on 6 January 2018

Nuclear PtdIns5P as a transducer of stress signaling: an in vivo role for PIP4Kbeta

scientific article

Nucleotide-dependent conformational changes of the AAA+ ATPase p97 revisited

scientific journal article

On Terminal Alkynes That Can React with Active-Site Cysteine Nucleophiles in Proteases

scientific article

On the structure and unimolecular chemistry of protonated halomethanes

On the structure of protonated methane

article

On-the-fly targeted selection of labeled peptides in liquid chromatography/mass spectrometry based quantitative proteomics

scientific article published on 01 January 2010

Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo

scientific article

Opposite Electron-Transfer Dissociation and Higher-Energy Collisional Dissociation Fragmentation Characteristics of Proteolytic K/R(X)n and (X)nK/R Peptides Provide Benefits for Peptide Sequencing in Proteomics and Phosphoproteomics

scientific article published on 2 December 2016

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

scientific article

Optimizing identification and quantitation of 15N-labeled proteins in comparative proteomics

scientific article

Optimizing macromolecular tandem mass spectrometry of large non-covalent complexes using heavy collision gases

article

Orthogonal separation techniques for the characterization of the yeast nuclear proteome.

scientific article

Oxidation of recombinant human interleukin-2 by potassium peroxodisulfate

scientific article published in October 2001

Oxidative stress-induced modifications of histidyl-tRNA synthetase affect its tRNA aminoacylation activity but not its immunoreactivity

scientific article published in 2011

Oxonium Ion-Guided Ion Mobility-Assisted Glycoproteomics on the timsTOF Pro

Oxonium Ion-Guided Optimization of Ion Mobility-Assisted Glycoproteomics on the timsTOF Pro

PRIME-XS, a European infrastructure for proteomics

scientific article published on 23 June 2014

PZR coordinates Shp2 Noonan and LEOPARD syndrome signaling in zebrafish and mice

scientific article

PaDuA: A Python Library for High-Throughput (Phospho)proteomics Data Analysis

scientific article published on 21 December 2018

Parsimonious Charge Deconvolution for Native Mass Spectrometry ⬇️

scientific article published on 29 January 2018

Peptidyl-Lys Metalloendopeptidase

article

Performing native mass spectrometry analysis on therapeutic antibodies

scientific article published on 18 May 2013

Personalized Profiling Reveals Donor- and Lactation-Specific Trends in the Human Milk Proteome and Peptidome

scientific article published on 01 April 2021

Personalized Proteome Profiles of Healthy and Tumor Human Colon Organoids Reveal Both Individual Diversity and Basic Features of Colorectal Cancer

scientific article published on January 2017

Perspectives in stem cell proteomics.

scientific article published on 28 April 2009

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels

scientific article

PhoX - an IMAC-enrichable Crosslinking Reagent

PhoX: An IMAC-Enrichable Cross-Linking Reagent

scientific article published on 19 August 2019

Phosphate Transfer in Activated Protein Complexes Reveals Interaction Sites.

scientific article published on 4 September 2017

Phosphatidylethanolamine-binding proteins, including RKIP, exhibit affinity for phosphodiesterase-5 inhibitors

scientific article published in November 2009

PhosphoPath: Visualization of Phosphosite-centric Dynamics in Temporal Molecular Networks.

scientific article published on 28 August 2015

Phosphopeptide Fragmentation and Site Localization by Mass Spectrometry: An Update

scientific article published on 05 December 2018

Phosphopeptide fragmentation and analysis by mass spectrometry

scientific article published on June 2009

Phosphoproteome dynamics in onset and maintenance of oncogene-induced senescence

scientific article

Phosphoproteomics

scientific article published on 15 January 2014

Phosphoproteomics Reveals Regulatory T Cell-Mediated DEF6 Dephosphorylation That Affects Cytokine Expression in Human Conventional T Cells.

scientific article published on 25 September 2017

Phosphoproteomics study based on in vivo inhibition reveals sites of calmodulin-dependent protein kinase II regulation in the heart

scientific article published on 7 August 2013

Phosphoproteomics-mediated identification of Fer kinase as a target of mutant Shp2 in Noonan and LEOPARD syndrome

scientific article

Phosphorylation dependence and stoichiometry of the complex formed by tyrosine hydroxylase and 14-3-3γ.

scientific article

Phosphorylation dynamics during early differentiation of human embryonic stem cells.

scientific article published in August 2009

Phosphorylation of Not4p functions parallel to BUR2 to regulate resistance to cellular stresses in Saccharomyces cerevisiae

scientific article

Photo-crosslinking analysis of preferential interactions between a transmembrane peptide and matching lipids

scientific article published in April 2004

Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells

scientific article published on 20 May 2008

Pre-fractionation Extends but also Creates a Bias in the Detectable HLA Class Ι Ligandome

article

Precursor of ether phospholipids is synthesized by a flavoenzyme through covalent catalysis

scientific article

Preparation and topology of the Mediator middle module

scientific article

Prestress strengthens the shell of Norwalk virus nanoparticles.

scientific article

Probing genuine strong interactions and post-translational modifications in the heterogeneous yeast exosome protein complex.

scientific article

Probing metal ion binding and conformational properties of the colicin E9 endonuclease by electrospray ionization time-of-flight mass spectrometry.

scientific article

Probing noncovalent protein-ligand interactions of the cGMP-dependent protein kinase using electrospray ionization time of flight mass spectrometry

scientific article published in October 2004

Probing the Proteome Response to Toluene Exposure in the Solvent Tolerant Pseudomonas putida S12

article

Probing the biophysical interplay between a viral genome and its capsid

scientific article

Probing the specificity of protein-protein interactions by quantitative chemical proteomics

scientific article published in January 2012

Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome

scientific article

Profiling of diet-induced neuropeptide changes in rat brain by quantitative mass spectrometry

scientific article published on 26 April 2013

Progressive methylation of ageing histones by Dot1 functions as a timer.

scientific article published on September 2011

Promoting Fc-Fc interactions between anti-capsular antibodies provides strong immune protection against Streptococcus pneumoniae

Protease bias in absolute protein quantitation

scientific article published on 30 May 2012

Proteasome Activation by Small Molecules.

scientific article

Proteasome-dependent degradation of transcription factor activating enhancer-binding protein 4 (TFAP4) controls mitotic division

scientific article

Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli

scientific article

Protein expression dynamics during replicative senescence of endothelial cells studied by 2-D difference in-gel electrophoresis.

scientific article published on April 2006

Protein flexibility and ligand rigidity: a thermodynamic and kinetic study of ITAM-based ligand binding to Syk tandem SH2.

scientific article

Protein signatures associated with tumor cell dissemination in head and neck cancer

scientific article published on 22 January 2011

Protein-tyrosine kinase activity profiling in knock down zebrafish embryos ⬇️

scientific article

Proteoform Profile Mapping of the Human Serum Complement Component C9 Revealing Unexpected New Features of N-, O-, and C-Glycosylation.

scientific article published on 21 February 2017

Proteoform Profiles Reveal That Alpha-1-Antitrypsin in Human Serum and Milk Is Derived From a Common Source

Proteogenomic Features of the Highly Polymorphic Histidine-rich Glycoprotein (HRG) Arose Late in Evolution

Proteome Adaptation of Saccharomyces cerevisiae to Severe Calorie Restriction in Retentostat Cultures

article

Proteome Biology of Stem Cells

scientific article published on 01 January 2008

Proteome adaptation in cell reprogramming proceeds via distinct transcriptional networks

scientific article published on 10 December 2014

Proteome analysis of yeast response to various nutrient limitations

scientific article published on 16 May 2006

Proteome biology of stem cells

Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry.

scientific article

Proteome-wide protein concentrations in the human heart.

scientific article

Proteomic Profiling of Mouse Helper T Cell Differentiation

scientific article published on 18 March 2019

Proteomic analyses uncover a new function and mode of action for mouse homolog of Diaphanous 2 (mDia2)

scientific article

Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive

scientific article

Proteomics and human embryonic stem cells

scientific article published on 29 May 2008

Proteomics beyond trypsin.

scientific article published on 14 April 2015

Proteomics reveals reduced expression of transketolase in pyrimidine 5'-nucleotidase deficient patients

scientific article published on 5 July 2016

Publication Committee meeting. HUPO 5th annual World Congress. Long Beach, CA, USA 30 October 2006.

scientific article published in April 2007

Qualitative and semiquantitative analysis of composite mixtures of antibodies by native mass spectrometry

scientific article published on 10 August 2012

Quantitative Analysis of the Interaction Strength and Dynamics of Human IgG4 Half Molecules by Native Mass Spectrometry

article

Quantitative Longitudinal Inventory of the N-Glycoproteome of Human Milk from a Single Donor Reveals the Highly Variable Repertoire and Dynamic Site-Specific Changes

scientific article published on 27 March 2020

Quantitative Map of Proteome Dynamics during Neuronal Differentiation.

scientific article published on February 2017

Quantitative Phosphoproteomics of Early Elicitor Signaling inArabidopsis

scientific article published on 21 February 2007

Quantitative Proteome and Phosphoproteome Analysis of Human Pluripotent Stem Cells

article

Quantitative analysis of the novel anticancer drug ABT-518, a matrix metalloproteinase inhibitor, plus the screening of six metabolites in human plasma using high-performance liquid chromatography coupled with electrospray tandem mass spectrometry

scientific article published in March 2004

Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis.

scientific article published on 27 November 2013

Quantitative determination of the novel anticancer drug E7070 (indisulam) and its metabolite (1,4-benzenedisulphonamide) in human plasma, urine and faeces by high-performance liquid chromatography coupled with electrospray ionization tandem mass spe

scientific article published on January 2004

Quantitative erythrocyte membrane proteome analysis with Blue-native/SDS PAGE.

scientific article published on 21 September 2009

Quantitative global phosphoproteomics of human umbilical vein endothelial cells after activation of the Rap signaling pathway

scientific article published in April 2013

Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle

scientific article published on 24 December 2009

Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth

scientific article published on 17 January 2013

Quantitative proteomic identification of host factors involved in the Salmonella typhimurium infection cycle

scientific article

Quantitative proteomics analysis reveals similar release profiles following specific PAR-1 or PAR-4 stimulation of platelets

article

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes

scientific article published in November 2007

Quantitative proteomics by metabolic labeling of model organisms

scientific article

Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes

scientific article published on 17 December 2007

RNA polymerase I contains a TFIIF-related DNA-binding subcomplex

scientific article

RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus

scientific article

RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions ⬇️

scientific article published on May 2, 2011

ROCK1 is a potential combinatorial drug target for BRAF mutant melanoma

scientific article

Rapid analyses of proteomes and interactomes using an integrated solid-phase extraction-liquid chromatography-MS/MS system

scientific article published on 8 December 2014

Rb and FZR1/Cdh1 determine CDK4/6-cyclin D requirement in C. elegans and human cancer cells

scientific article

Real-time monitoring of enzymatic DNA hydrolysis by electrospray ionization mass spectrometry.

scientific article

Rearrangement of the Protein Phosphatase 1 Interactome During Heart Failure Progression

scientific article published on 18 April 2018

Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis.

scientific article published on 04 May 2012

Recent liquid chromatographic-(tandem) mass spectrometric applications in proteomics

scientific article

Recombinant Expression of the Full-length Ectodomain of LDL Receptor-related Protein 1 (LRP1) Unravels pH-dependent Conformational Changes and the Stoichiometry of Binding with Receptor-associated Protein (RAP).

scientific article

Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments

scientific article published on 27 June 2019

Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles

scientific article (publication date: July 2009)

Reconciling proteomics with next generation sequencing.

scientific article

Recovery from a DNA-damage-induced G2 arrest requires Cdk-dependent activation of FoxM1.

scientific article published on 9 April 2010

Regulated increase in folding capacity prevents unfolded protein stress in the ER.

scientific article

Regulating the regulator: Insights into the cardiac protein phosphatase 1 interactome

scientific article published on 20 September 2016

Regulation of retromer recruitment to endosomes by sequential action of Rab5 and Rab7.

scientific article

Releasing Nonperipheral Subunits from Protein Complexes in the Gas Phase

scientific article published on 19 November 2020

Reorganized PKA-AKAP associations in the failing human heart.

scientific article

Resolving heterogeneous macromolecular assemblies by Orbitrap-based single-particle charge detection mass spectrometry

scientific article published on 09 March 2020

Resolving stoichiometries and oligomeric states of glutamate synthase protein complexes with curve fitting and simulation of electrospray mass spectra

article

Resolving the micro-heterogeneity and structural integrity of monoclonal antibodies by hybrid mass spectrometric approaches

scientific article

Revealing promiscuous drug-target interactions by chemical proteomics.

scientific article published on 23 July 2009

Robust and cost-effective capillary electrophoresis-mass spectrometry interfaces suitable for combination with on-line analyte preconcentration

scientific article

Robust phosphoproteome enrichment using monodisperse microsphere-based immobilized titanium (IV) ion affinity chromatography

scientific article

Robust, Sensitive, and Automated Phosphopeptide Enrichment Optimized for Low Sample Amounts Applied to Primary Hippocampal Neurons.

scientific article published on 6 December 2016

RockerBox: analysis and filtering of massive proteomics search results.

scientific article

Sampling From the Proteome to the Human Leukocyte Antigen-DR (HLA-DR) Ligandome Proceeds Via High Specificity

scientific article published on 13 January 2016

Sbk2, a Newly Discovered Atrium-Enriched Regulator of Sarcomere Integrity

Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

scientific article published on 01 July 2004

Selective cross-linking of coinciding protein assemblies by in-gel cross-linking mass spectrometry

scientific article published on 18 January 2021

Selective enrichment of Ser-/Thr-phosphorylated peptides in the presence of Ser-/Thr-glycosylated peptides

scientific article published on 01 December 2006

Selectivity in enrichment of cAMP-dependent protein kinase regulatory subunits type I and type II and their interactors using modified cAMP affinity resins.

scientific article published on 31 December 2008

Self-assembly and characterization of small and monodisperse dye nanospheres in a protein cage

Self-sorting of foreign proteins in a bacterial nanocompartment

scientific article published on 27 February 2014

Separation and identification of enzymatic sucrose hydrolysis products by high-performance anion-exchange chromatography with pulsed amperometric detection

scientific article published in June 2001

Separation of PKA and PKG signaling nodes by chemical proteomics.

scientific article published on January 2015

Sequence-specific conformational flexibility of SNARE transmembrane helices probed by hydrogen/deuterium exchange

scientific article

Sequential waves of functionally related proteins are expressed when B cells prepare for antibody secretion

scientific article published on February 2003

Serine 25 phosphorylation inhibits RIPK1 kinase-dependent cell death in models of infection and inflammation

scientific article published on 15 April 2019

Severe acute respiratory syndrome coronavirus (SARS-CoV) infection inhibition using spike protein heptad repeat-derived peptides.

scholarly article

Signal Transduction Reaction Monitoring Deciphers Site-Specific PI3K-mTOR/MAPK Pathway Dynamics in Oncogene-Induced Senescence.

scientific article published on 2 June 2015

Similar Albeit Not the Same: In-Depth Analysis of Proteoforms of Human Serum, Bovine Serum, and Recombinant Human Fetuin

scientific article published on 13 July 2018

Similar is not the same: differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi.

scientific article

Simply Extending the Mass Range in Electron Transfer Higher Energy Collisional Dissociation Increases Confidence in N-Glycopeptide Identification

scientific article published on 31 July 2019

Simultaneous assessment of kinetic, site-specific, and structural aspects of enzymatic protein phosphorylation.

scientific article published on 9 July 2014

Single-cell derived tumor organoids display diversity in HLA class I peptide presentation

scientific article published on 21 October 2020

Single-step enrichment by Ti4+-IMAC and label-free quantitation enables in-depth monitoring of phosphorylation dynamics with high reproducibility and temporal resolution.

scientific article published on 21 May 2014

Site-Specific Activity-Based Protein Profiling Using Phosphonate Handles

Site-specific functionality and tryptophan mimicry of lipidation in tetraspanin CD9

scientific article published on 17 March 2020

Site-specific methionine oxidation in calmodulin affects structural integrity and interaction with Ca2+/calmodulin-dependent protein kinase II

Six alternative proteases for mass spectrometry-based proteomics beyond trypsin.

scientific article

Sizing up large protein complexes by electrospray ionisation-based electrophoretic mobility and native mass spectrometry: morphology selective binding of Fabs to hepatitis B virus capsids

scientific article

Small RNA changes en route to distinct cellular states of induced pluripotency.

scientific article published on 10 December 2014

Snapshots of kinase activities.

scientific article

Soluble MAC is primarily released from MAC-resistant bacteria that potently convert complement component C5

Soluble MAC is primarily released from MAC-resistant bacteria that potently convert complement component C5

Spacer capture and integration by a type I-F Cas1-Cas2-3 CRISPR adaptation complex.

scientific article published on 13 June 2017

Spatial Organization in Protein Kinase A Signaling Emerged at the Base of Animal Evolution.

scientific article

Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization.

scientific article published on 28 August 2015

Spatially Resolving the Secretome within the Mycelium of the Cell Factory Aspergillus niger

scientific article published on 09 April 2012

Spatio-temporal analysis of molecular determinants of neuronal degeneration in the aging mouse cerebellum

scientific article published on 11 February 2013

Species-Specific Determinants in the IgG CH3 Domain Enable Fab-Arm Exchange by Affecting the Noncovalent CH3-CH3 Interaction Strength

article

Spectral Interferences Impede the High-Resolution Mass Analysis of Recombinant Adeno-Associated Viruses

Sphingosine kinase interacting protein is an A-kinase anchoring protein specific for type I cAMP-dependent protein kinase

scientific article

Squeezing protein shells: how continuum elastic models, molecular dynamics simulations, and experiments coalesce at the nanoscale.

scientific article

Stability and shape of hepatitis B virus capsids in vacuo

scientific article published on January 2008

Stability of thioTEPA and its metabolites, TEPA, monochloroTEPA and thioTEPA-mercapturate, in plasma and urine

scientific article published in May 2000

Stable isotope tagging of epitopes: a highly selective strategy for the identification of major histocompatibility complex class I-associated peptides induced upon viral infection

scientific article published on 23 January 2006

StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry

scientific article

Stochastic palmitoylation of accessible cysteines in membrane proteins revealed by native mass spectrometry

scientific article published on 3 November 2017

Straightforward and de novo peptide sequencing by MALDI-MS/MS using a Lys-N metalloendopeptidase.

scientific article

Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase.

scientific article

Strong cation exchange (SCX) based analytical methods for the targeted analysis of protein post-translational modifications ⬇️

scientific article published on October 12, 2010

Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications

scientific article published on 29 September 2008

Structural Analysis of a Temperature-Induced Transition in a Viral Capsid Probed by HDX-MS.

scientific article published on March 2017

Structural analysis of high affinity divalent phosphopeptide hybrids of spleen tyrosine kinase

Structural basis for CRISPR RNA-guided DNA recognition by Cascade

scientific article

Structural basis of myelin-associated glycoprotein adhesion and signalling

scientific journal article

Structural basis of soluble membrane attack complex packaging for clearance

scientific article published on 19 October 2021

Structural biology of RNA polymerase III: mass spectrometry elucidates subcomplex architecture

scientific article published on October 2007

Structural reorganization of the antigen-binding groove of human CD1b for presentation of mycobacterial sulfoglycolipids

scientific article

Structural studies on flavin reductase PheA2 reveal binding of NAD in an unusual folded conformation and support novel mechanism of action

scientific article

Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus

scientific article published in October 2013

Structure and assembly of scalable porous protein cages.

scientific article published on 10 March 2017

Structure elucidation of aplidine metabolites formed in vitro by human liver microsomes using triple quadrupole mass spectrometry

scientific article published in June 2005

Structure of smAKAP and its regulation by PKA-mediated phosphorylation.

scientific article published on 30 March 2016

Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome

scientific article published on 02 October 2019

Structure of the ribosome associating GTPase HflX.

scientific article published in February 2010

Structure of the yeast vacuolar ATPase

scientific article

Structure, stability and dynamics of norovirus P domain derived protein complexes studied by native mass spectrometry

scientific article published on 12 January 2012

Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state.

scientific article

Studying 18 MDa virus assemblies with native mass spectrometry

scientific article (publication date: 2 April 2013)

Substrate occupancy at the onset of oligomeric transitions of DegP.

scientific article published on 26 December 2013

Subunit exchange rates in Hepatitis B virus capsids are geometry- and temperature-dependent.

scientific article

Suction blister fluid as potential body fluid for biomarker proteins

scientific article published on 01 October 2007

Surface plasmon resonance mass spectrometry in proteomics.

scientific article

Surface-plasmon-resonance-based chemical proteomics: efficient specific extraction and semiquantitative identification of cyclic nucleotide-binding proteins from cellular lysates by using a combination of surface plasmon resonance, sequential elutio

scientific article published on February 2007

Symmetry of Charge Partitioning in Collisional and UV Photon-Induced Dissociation of Protein Assemblies.

scientific article published on 2 August 2016

Synthesis and electrospray mass spectrometric studies on a chiral, non-racemic, phosphoramide receptor molecule

TMEM59 potentiates Wnt signaling by promoting signalosome formation.

scientific article

TREM-1 multimerization is essential for its activation on monocytes and neutrophils

scientific article published on 22 March 2018

Talin-KANK1 interaction controls the recruitment of cortical microtubule stabilizing complexes to focal adhesions.

scientific article published on 13 July 2016

Tandem Native Mass-Spectrometry on Antibody-Drug Conjugates and Submillion Da Antibody-Antigen Protein Assemblies on an Orbitrap EMR Equipped with a High-Mass Quadrupole Mass Selector

scientific article published on 27 May 2015

Tandem mass spectrometry of intact GroEL-substrate complexes reveals substrate-specific conformational changes in the trans ring.

scientific article

Target profiling of a small library of phosphodiesterase 5 (PDE5) inhibitors using chemical proteomics.

scientific article

Targeted analysis of lysosomal directed proteins and their sites of mannose-6-phosphate modification

scientific article published on 20 September 2018

Targeted analysis of protein termini.

scientific article

Targeted analysis of tyrosine phosphorylation by immuno-affinity enrichment of tyrosine phosphorylated peptides prior to mass spectrometric analysis

article

Targeted large‐scale analysis of protein acetylation ⬇️

scientific article published on January 18, 2011

Targeted phosphotyrosine profiling of glycoprotein VI signaling implicates oligophrenin-1 in platelet filopodia formation

scientific article published on 25 April 2013

Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants

scientific article published on December 2011

Targeting proline in (phospho)proteomics

scientific article published on 20 December 2019

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data

scientific article

The Early Metazoan Trichoplax adhaerens Possesses a Functional O-GlcNAc System

scientific article

The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4' cell markers

scientific article published on 12 June 2012

The Orphan Immune Receptor LILRB3 Modulates Fc Receptor-Mediated Functions of Neutrophils

scientific article published on 08 January 2020

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

scientific article (publication date: December 2012)

The Soluble Periplasmic Domains of Escherichia coli Cell Division Proteins FtsQ/FtsB/FtsL Form a Trimeric Complex with Submicromolar Affinity

scientific article

The SysteMHC Atlas project

scientific article published on 29 July 2017

The Yeast Phospholipid N-Methyltransferases Catalyzing the Synthesis of Phosphatidylcholine Preferentially Convert Di-C16:1 Substrates Both in Vivo and in Vitro

scientific article published in Journal of Biological Chemistry

The atheroma plaque secretome stimulates the mobilization of endothelial progenitor cells ex vivo

scientific article published on 18 February 2017

The benefits of hybrid fragmentation methods for glycoproteomics

scholarly article by Karli R. Reiding et al published November 2018 in Trends in Analytical Chemistry

The cleaved N-terminus of pVI binds peripentonal hexons in mature adenovirus.

scientific article published on 5 March 2014

The diverse and expanding role of mass spectrometry in structural and molecular biology

scientific article

The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae

scientific article published on 10 October 2011

The early glycation products of the Maillard reaction: mass spectrometric characterization of novel imidazolidinones derived from an opioid pentapeptide and glucose

scientific article published in January 2001

The effect of oxytocin and an oxytocin antagonist on the human myometrial proteome

scientific article published on 18 September 2009

The effect of the source pressure on the abundance of ions of noncovalent protein assemblies in an electrospray ionization orthogonal time-of-flight instrument

scientific article published on 01 January 2001

The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels

scholarly article

The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search

scientific article

The hinge region operates as a stability switch in cGMP-dependent protein kinase I alpha.

scientific article published on 2 April 2007

The impact of mass spectrometry on the study of intact antibodies: from post-translational modifications to structural analysis.

scientific article

The influence of the acyl chain composition of cardiolipin on the stability of mitochondrial complexes; an unexpected effect of cardiolipin in alpha-ketoglutarate dehydrogenase and prohibitin complexes

scientific article published on 24 November 2009

The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for co-existing respiratory supercomplexes.

scientific article published on 8 December 2017

The kinase TNIK is an essential activator of Wnt target genes

scientific article

The leukemia-associated Mllt10/Af10-Dot1l are Tcf4/β-catenin coactivators essential for intestinal homeostasis

scientific article

The phosphoproteomics data explosion.

scientific article

The physiology of Agaricus bisporus in semi-commercial compost cultivation appears to be highly conserved among unrelated isolates.

scientific article published on 22 December 2017

The proteome of the insoluble Schistosoma mansoni eggshell skeleton

scientific article published on 12 January 2011

The selective utilization of substrates in vivo by the phosphatidylethanolamine and phosphatidylcholine biosynthetic enzymes Ept1p and Cpt1p in yeast

scientific article

The time is right: proteome biology of stem cells

scientific article published on March 2008

The toxin-antitoxin proteins relBE2Spn of Streptococcus pneumoniae: Characterization and association to their DNA target

scientific article published on 08 May 2012

The two biosynthetic routes leading to phosphatidylcholine in yeast produce different sets of molecular species. Evidence for lipid remodeling

scientific article published in March 2003

Thermal activation of the co-chaperonins GroES and gp31 probed by mass spectrometry.

scientific article published in November 2008

Thriving in the heat – Lysine acetylation stabilizes the quaternary structure of a Mega-Dalton hyperthermoactive PEP-synthase

To Cleave or Not To Cleave in XL-MS?

scientific article published on 27 December 2019

Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

scientific article published on 12 October 2020

Toward a comprehensive characterization of a human cancer cell phosphoproteome.

scientific article published on 18 December 2012

Toward an Optimized Workflow for Middle-Down Proteomics

scientific article published on 24 February 2017

Toward an efficient workflow for the analysis of the human milk peptidome

scientific article published on 02 February 2019

Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.

scientific article published on 31 October 2012

Transcriptional Activation by CprK1 Is Regulated by Protein Structural Changes Induced by Effector Binding and Redox State

scientific article published in Journal of Biological Chemistry

Trends in ultrasensitive proteomics ⬇️

scientific article published on 07 January 2012

Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates

scientific article

Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors

scientific article published on 30 August 2012

Tyrosine phosphorylation profiling in FGF-2 stimulated human embryonic stem cells.

scientific article

USP17- and SCFβTrCP--regulated degradation of DEC1 controls the DNA damage response

scientific article

Ubiquitylation of the ER-Shaping Protein Lunapark via the CRL3KLHL12 Ubiquitin Ligase Complex

scientific article published on 01 May 2020

Ultra acidic strong cation exchange enabling the efficient enrichment of basic phosphopeptides.

scientific article

Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD)

scientific article

Unbiased selective isolation of protein N-terminal peptides from complex proteome samples using phospho tagging (PTAG) and TiO(2)-based depletion

scientific article

Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle.

scientific article published on 28 June 2015

Universal quantitative kinase assay based on diagonal SCX chromatography and stable isotope dimethyl labeling provides high-definition kinase consensus motifs for PKA and human Mps1.

scientific article

Unraveling the Macromolecular Pathways of IgG Oligomerization and Complement Activation on Antigenic Surfaces

scientific article published on 11 June 2019

Unraveling the ubiquitin-regulated signaling networks by mass spectrometry-based proteomics.

scientific article

Unravelling the Neospora caninum secretome through the secreted fraction (ESA) and quantification of the discharged tachyzoite using high-resolution mass spectrometry-based proteomics

scientific article

Uptake and remodeling of exogenous phosphatidylethanolamine in E. coli.

scientific article

Use of Stable Isotope Dimethyl Labeling Coupled to Selected Reaction Monitoring to Enhance Throughput by Multiplexing Relative Quantitation of Targeted Proteins

scientific article published on 15 May 2012

Vaccine antigens modulate the innate response of monocytes to Al(OH)3.

scientific article published on 29 May 2018

Vancomycin in vacuo

Vertex-Specific Proteins pUL17 and pUL25 Mechanically Reinforce Herpes Simplex Virus Capsids.

scientific article

Widespread bacterial protein histidine phosphorylation revealed by mass spectrometry-based proteomics.

scientific article

Wnt signaling through inhibition of β-catenin degradation in an intact Axin1 complex

scientific article

Worms from venus and mars: proteomics profiling of sexual differences in Caenorhabditis elegans using in vivo 15N isotope labeling.

scientific article published on January 2010

ZIC-cHILIC as a fractionation method for sensitive and powerful shotgun proteomics

scientific article published on 25 October 2012

Zwitterionic hydrophilic interaction liquid chromatography (ZIC-HILIC and ZIC-cHILIC) provide high resolution separation and increase sensitivity in proteome analysis

scientific article published on 28 March 2011

aPKC phosphorylates NuMA-related LIN-5 to position the mitotic spindle during asymmetric division.

scientific article published on 21 August 2011

cGMP-binding prepares PKG for substrate binding by disclosing the C-terminal domain.

scientific article

qcML: an exchange format for quality control metrics from mass spectrometry experiments

scientific article published on 23 April 2014

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