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List of works by Oliver Fiehn

'Nothing of chemistry disappears in biology': the Top 30 damage-prone endogenous metabolites

scientific article

17-α estradiol ameliorates age-associated sarcopenia and improves late-life physical function in male mice but not in females or castrated males

A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors

scientific article published on 01 March 2020

A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium ⬇️

scientific article published on 22 May 2019

A Genetic Response Score for Hydrochlorothiazide Use: Insights From Genomics and Metabolomics Integration

scientific article published on 5 July 2016

A Mediation Approach to Discovering Causal Relationships between the Metabolome and DNA Methylation in Type 1 Diabetes

scientific article published in 2021

A comprehensive urinary metabolomic approach for identifying kidney cancerr

scientific article published on 26 January 2007

A family of metal-dependent phosphatases implicated in metabolite damage-control

scientific article

A lipidome atlas in MS-DIAL 4

scientific article published on 15 June 2020

A lipidome-wide association study of the lipoprotein insulin resistance index

scientific article published on 25 June 2020

A metabolome atlas of the aging mouse brain

scientific article published on 15 October 2021

A metabolomics approach using juvenile cystic mice to identify urinary biomarkers and altered pathways in polycystic kidney disease

scientific article

A new metabolomic workflow for early detection of Alzheimer's disease

scientific article

A novel amino acid and metabolomics signature in mice overexpressing muscle uncoupling protein 3.

scientific article published on 10 November 2016

A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis

scholarly article

A proposed framework for the description of plant metabolomics experiments and their results

article

A systems approach implicates nuclear receptor targeting in the Atp7b(-/-) mouse model of Wilson's disease

scientific article published on 08 May 2012

Abrogation of esophageal carcinoma development in miR-31 knockout rats

scientific article published on 02 March 2020

Acarbose has sex-dependent and independent effects on age-related physical function, cardiac health and lipid biology

scientific article published on 29 September 2020

Activation of Aryl Hydrocarbon Receptor Induces Vascular Inflammation and Promotes Atherosclerosis in Apolipoprotein E−/− Mice ⬇️

scientific article published on March 24, 2011

Acylcarnitines as markers of exercise-associated fuel partitioning, xenometabolism, and potential signals to muscle afferent neurons

scientific article published on 12 October 2016

Adipocyte-induced FABP4 expression in ovarian cancer cells promotes metastasis and mediates carboplatin resistance

scientific article published on 13 February 2020

Advances in structure elucidation of small molecules using mass spectrometry

scientific article (publication date: December 2010)

Alternative outlets for sustaining photosynthetic electron transport during dark-to-light transitions

scientific article published on 17 May 2019

An in silico MS/MS library for automatic annotation of novel FAHFA lipids

scientific article (publication date: 2015)

Analysis of Arabidopsis natural variation in biomass accumulation and metabolism

Analysis of early host responses for asymptomatic disease detection and management of specialty crops

scientific article published on January 2010

Analysis of highly polar compounds of plant origin: combination of hydrophilic interaction chromatography and electrospray ion trap mass spectrometry.

scientific article

Anesthetic induction with guaifenesin and propofol in adult horses ⬇️

scientific article published on December 1, 2011

Application of liquid chromatography-mass spectrometry analysis in metabolomics: reversed-phase monolithic capillary chromatography and hydrophilic chromatography coupled to electrospray ionization-mass spectrometry.

scientific article published in January 2007

Application of metabolomics to plant genotype discrimination using statistics and machine learning

scientific article published in January 2002

Applications of metabolomics in agriculture

scientific article published on November 2006

Applying in-silico retention index and mass spectra matching for identification of unknown metabolites in accurate mass GC-TOF mass spectrometry

scientific article

Arabidopsis and maize RidA proteins preempt reactive enamine/imine damage to branched-chain amino acid biosynthesis in plastids

scientific article published on 28 July 2014

Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches

scientific article

Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome

scientific article published on 30 November 2011

Associations of Trimethylamine N-Oxide With Nutritional and Inflammatory Biomarkers and Cardiovascular Outcomes in Patients New to Dialysis

scientific article published on 19 March 2015

Author Correction: Structure of human GABAB receptor in an inactive state

scientific article published on 15 July 2020

Author Correction: TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes

scientific article published on 08 May 2020

Bacteria engineered to produce IL-22 in intestine induce expression of REG3G to reduce ethanol-induced liver disease in mice

scientific article published on 17 November 2018

Beyond the Ground State: Predicting Electron Ionization Mass Spectra Using Excited-State Molecular Dynamics

scientific article published in 2022

Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase

scientific article published on 17 January 2017

Calculating optimal modulation periods to maximize the peak capacity in two-dimensional HPLC.

scientific article published on 17 April 2007

Can we discover novel pathways using metabolomic analysis?

scientific article

Cardiac steatosis potentiates angiotensin II effects in the heart

scientific article

Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy

scientific article published on 25 August 2020

Changes in plasma metabolites and glucose homeostasis during omega-3 polyunsaturated fatty acid supplementation in women with polycystic ovary syndrome

scientific article published on 13 April 2016

Changes in the proteomic and metabolic profiles of Beta vulgaris root tips in response to iron deficiency and resupply

scientific article

Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets

scientific article published on 6 November 2017

Chemical-damage MINE: A database of curated and predicted spontaneous metabolic reactions

scientific article published in 2022

Chronic, Intermittent Microdoses of the Psychedelic N,N-Dimethyltryptamine (DMT) Produce Positive Effects on Mood and Anxiety in Rodents

scientific article published on 04 March 2019

Citrus tristeza virus infection in sweet orange trees and a mandarin × tangor cross alters low molecular weight metabolites assessed using gas chromatography mass spectrometry (GC/MS)

article

Cofactor symbiosis for enhanced algal growth, biofuel production, and wastewater treatment

article

Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks

scientific article

Comparative Effects of Fructose and Glucose on Lipogenic Gene Expression and Intermediary Metabolism in HepG2 Liver Cells ⬇️

scientific article published on November 11, 2011

Comparative analysis of obesity-related cardiometabolic and renal biomarkers in human plasma and serum

scientific article published on 28 October 2019

Comparative evaluation of extraction methods for simultaneous mass-spectrometric analysis of complex lipids and primary metabolites from human blood plasma

scientific article published on 30 August 2014

Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence

scientific article published on 28 July 2014

Comparative metabolomics of estrogen receptor positive and estrogen receptor negative breast cancer: alterations in glutamine and beta-alanine metabolism

scientific article

Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Flight, and Quadrupole Mass Spectrometry

scientific article published in 2021

Comparing metabolomic and pathologic biomarkers alone and in combination for discriminating Alzheimer's disease from normal cognitive aging

scientific article published on 27 June 2013

Comparison of gas chromatography-coupled time-of-flight mass spectrometry and 1H nuclear magnetic resonance spectroscopy metabolite identification in white wines from a sensory study investigating wine body

scientific article published in August 2009

Comparison of rapid liquid chromatography-electrospray ionization-tandem mass spectrometry methods for determination of glycoalkaloids in transgenic field-grown potatoes

scientific article published in January 2005

Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry

scientific article

Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy

scientific article published on 25 May 2017

Comprehensive metabolomic study of the response of HK-2 cells to hyperglycemic hypoxic diabetic-like milieu

scientific article published on 03 March 2021

Comprehensive two-dimensional gas chromatography–time-of-flight mass spectrometry (GC × GC-TOF) for high resolution metabolomics: biomarker discovery on spleen tissue extracts of obese NZO compared to lean C57BL/6 mice

article

Continued Alcohol Misuse in Human Cirrhosis is Associated with an Impaired Gut-Liver Axis

scientific article published on 19 September 2017

Critical Assessment of Small Molecule Identification 2016: automated methods

scientific article

Data Processing, Metabolomic Databases and Pathway Analysis

Deciphering metabolic networks

scientific article

Detection of Huanglongbing disease using differential mobility spectrometry.

scientific article

Detection of an endogenous urinary biomarker associated with CYP2D6 activity using global metabolomics

scientific article published on December 2014

Determination of elemental compositions by gas chromatography/time-of-flight mass spectrometry using chemical and electron ionization.

scientific article

Diabetes Associated Metabolomic Perturbations in NOD Mice

scientific article

Diacetylspermine Is a Novel Prediagnostic Serum Biomarker for Non-Small-Cell Lung Cancer and Has Additive Performance With Pro-Surfactant Protein B.

scientific article

Differential metabolic networks unravel the effects of silent plant phenotypes

scholarly article

Discovery of a widespread prokaryotic 5-oxoprolinase that was hiding in plain sight

scientific article

Discovery of synthesis and secretion of polyol esters of fatty acids by four basidiomycetous yeast species in the order Sporidiobolales

scientific article

Distinction of synthetic dl-α-tocopherol from natural vitamin E (d-α-tocopherol) by reversed-phase liquid chromatography. Enhanced selectivity of a polymeric C18 stationary phase at low temperature and/or at high pressure

scientific article published on 27 April 2016

Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of and Revealed by Metabolomic and Gene Expression Profiles

article

Divergent metabolome and proteome suggest functional independence of dual phloem transport systems in cucurbits

scientific article

Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed by Neuropeptidomics Mass Spectrometry

scientific article published on 17 April 2018

Early PQQ supplementation has persistent long-term protective effects on developmental programming of hepatic lipotoxicity and inflammation in obese mice

scientific article

Effect of steroidal saponins from Agave on the polysaccharide cell wall composition of Saccharomyces cerevisiae and Kluyveromyces marxianus

article

Effects of Centella asiatica extract on antioxidant status and liver metabolome of rotenone-treated rats using GC-MS

scientific article published on 17 October 2018

Effects of Gut Bacteria Depletion and High-Na+ and Low-K+ Intake on Circulating Levels of Biogenic Amines

scientific article published on 12 December 2018

Effects of facultative symbionts and heat stress on the metabolome of pea aphids

scientific article

Efficiency of short, small-diameter columns for reversed-phase liquid chromatography under practical operating conditions.

scientific article

Eighteen new oleaginous yeast species

scientific article

Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats.

scientific article

Epimetabolites: discovering metabolism beyond building and burning

scientific article published on 14 February 2017

Erratum: Ismail, I.T.; et al. Inborn Errors of Metabolism in the Era of Untargeted Metabolomics and Lipidomics. Metabolites 2019, 9, 242

scientific article published on 06 January 2020

Establishing reporting standards for metabolomic and metabonomic studies: a call for participation

scientific article published on January 2006

Evaluation and Optimization of Metabolome Sample Preparation Methods for Saccharomyces cerevisiae ⬇️

scientific article published on January 25, 2013

Evaluation of Sampling and Extraction Methodologies for the Global Metabolic Profiling of Saccharophagus degradans ⬇️

scientific article published on August 1, 2010

Evaluation of metabolomics profiles of grain from maize hybrids derived from near-isogenic GM positive and negative segregant inbreds demonstrates that observed differences cannot be attributed unequivocally to the GM trait

scientific article published on 15 March 2016

Evidence That COG0325 Proteins are involved in PLP Homeostasis

scientific article

Evidence that the metabolite repair enzyme NAD(P)HX epimerase has a moonlighting function.

scientific article

Exercise plasma metabolomics and xenometabolomics in obese, sedentary, insulin-resistant women: impact of a fitness and weight loss intervention

scientific article published on 17 September 2019

Exogenous GLP-1 Stimulates TCA Cycle and Suppresses Gluconeogenesis and Ketogenesis in Late-fasted Northern Elephant Seals Pups

scientific article published on 06 January 2021

Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa

scientific article published on 20 November 2019

Exploration of polar lipid accumulation profiles in Euglena gracilis using LipidBlast, an MS/MS spectral library constructed in silico

scientific article

Extending biochemical databases by metabolomic surveys

scientific article

Extending biochemical databases by metabolomic surveys

scientific article published in Journal of Biological Chemistry

Extending the breadth of metabolite profiling by gas chromatography coupled to mass spectrometry

scientific article published on March 2008

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

scientific article (publication date: 15 December 2009)

Fluoroacetate distribution, response to fluoridation, and synthesis in juvenile Gastrolobium bilobum plants

scientific article published in 2022

Functional Microbiomics Reveals Alterations of the Gut Microbiome and Host Co-Metabolism in Patients With Alcoholic Hepatitis

scientific article published on 19 June 2020

Functional characterization of the cytochrome P450 monooxygenase CYP71AU87 indicates a role in marrubiin biosynthesis in the medicinal plant Marrubium vulgare

article

Gene regulation in parthenocarpic tomato fruit

scientific article published on 21 August 2009

Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach

scientific article published on 26 September 2019

Generation and quality control of lipidomics data for the alzheimer's disease neuroimaging initiative cohort

scholarly article by Dinesh Kumar Barupal et al published 20 November 2018 in Scientific Data

Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease

scientific article published on 01 May 2019

Genomic and experimental evidence for multiple metabolic functions in the RidA/YjgF/YER057c/UK114 (Rid) protein family

scientific article published on 15 May 2015

Gestational Hypoxia and Programing of Lung Metabolism

scientific article published on 29 November 2019

Gestational long-term hypoxia induces metabolomic reprogramming and phenotypic transformations in fetal sheep pulmonary arteries

scientific article published on 24 February 2021

Global metabolic profiling of plant cell wall polysaccharide degradation by Saccharophagus degradans

scientific article published in February 2010

Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40.

scientific article published on 6 March 2010

Glucagon Couples Hepatic Amino Acid Catabolism to mTOR-Dependent Regulation of α-Cell Mass

scientific article published on 9 July 2015

Glutamate enrichment as new diagnostic opportunity in breast cancer

scientific article published on 4 September 2014

Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients

scientific article published on 01 September 2018

Habitual physical activity and plasma metabolomic patterns distinguish individuals with low vs. high weight loss during controlled energy restriction

scientific article

Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.

scientific article published on 6 October 2017

Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids.

scientific article published on 12 June 2012

Hexosamine biosynthetic pathway and O-GlcNAc-processing enzymes regulate daily rhythms in protein O-GlcNAcylation

scientific article published in 2021

Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops

scientific article

High copper selectively alters lipid metabolism and cell cycle machinery in the mouse model of Wilson disease.

scientific article published on 7 January 2007

High quality metabolomic data for Chlamydomonas reinhardtii

scientific article

High-dose simvastatin exhibits enhanced lipid-lowering effects relative to simvastatin/ezetimibe combination therapy

scientific article

Highly efficient analysis of underivatized carbohydrates using monolithic-silica-based capillary hydrophilic interaction (HILIC) HPLC.

scientific article

Highly efficient monolithic silica capillary columns modified with poly(acrylic acid) for hydrophilic interaction chromatography

scientific article published on 13 July 2007

Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion

scientific article published on 15 June 2016

How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry

scientific article (publication date: 2009)

How Well Can We Predict Mass Spectra from Structures? Benchmarking Competitive Fragmentation Modeling for Metabolite Identification on Untrained Tandem Mass Spectra

scientific article published in 2022

Human gut microbiome adopts an alternative state following small bowel transplantation

scientific article

Human metabolome variation along the upper intestinal tract

Human-like hyperplastic prostate with low ZIP1 induced solely by Zn deficiency in rats

article published in the Proceedings of the National Academy of Sciences of the United States of America

Hunter-gatherer tobacco smoking: earliest evidence from the Pacific Northwest Coast of North America

scientific article published in February 2013

Hydrocarbon phenotyping of algal species using pyrolysis-gas chromatography mass spectrometry

scientific article (publication date: 21 May 2010)

Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software

scientific article

Identification of a metabolic disposal route for the oncometabolite S-(2-succino)cysteine in Bacillus subtilis

scientific article published on 6 April 2018

Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations

scientific article published on 28 November 2007

Identification of naturally occurring fatty acids of the myelin sheath that resolve neuroinflammation

scientific article

Identification of small molecules using accurate mass MS/MS search

scientific article (publication date: 24 April 2017)

Identifying Toxicologically Significant Compounds in Urban Wildfire Ash Using <i>In Vitro</i> Bioassays and High-Resolution Mass Spectrometry

scientific article published in 2021

Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics.

scientific article

Impact of a weight loss and fitness intervention on exercise-associated plasma oxylipin patterns in obese, insulin-resistant, sedentary women

scientific article published on 01 September 2020

Impact of genetics and environment on the metabolite composition of maize grain

scientific article published on 01 March 2010

Impact of post-collection freezing delay on the reliability of serum metabolomics in samples reflecting the California mid-term pregnancy biobank

scientific article published on 15 November 2018

Impact of thiamine metabolites and spent medium from Chlorella sorokiniana on metabolism in the green algae Auxenochlorella prototheciodes

Improved metabolic health alters host metabolism in parallel with changes in systemic xeno-metabolites of gut origin

scientific article (publication date: 2014)

In-Silico-Generated Library for Sensitive Detection of 2-Dimethylaminoethylamine Derivatized FAHFA Lipids Using High-Resolution Tandem Mass Spectrometry

scientific article published on 31 March 2020

Inborn Errors of Metabolism in the Era of Untargeted Metabolomics and Lipidomics

scientific article published on 21 October 2019

Increasing Compound Identification Rates in Untargeted Lipidomics Research with Liquid Chromatography Drift Time–Ion Mobility Mass Spectrometry

article

Increasing lipidomic coverage by selecting optimal mobile-phase modifiers in LC–MS of blood plasma

Induced pluripotent stem cells show metabolomic differences to embryonic stem cells in polyunsaturated phosphatidylcholines and primary metabolism

scientific article

Informatics for cross-sample analysis with comprehensive two-dimensional gas chromatography and high-resolution mass spectrometry (GCxGC–HRMS) ⬇️

scientific article published on October 7, 2010

Informatics for improved algal taxonomic classification and research: A case study of UTEX 2341

article

Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics.

scientific article published on 3 July 2018

Insulin induces a shift in lipid and primary carbon metabolites in a model of fasting-induced insulin resistance

scientific article

Integrated Metabolomics and Proteomics Highlight Altered Nicotinamide- and Polyamine Pathways in Lung Adenocarcinoma

scientific article published on 3 January 2017

Integrating Multiple Analytical Datasets to Compare Metabolite Profiles of Mouse Colonic-Cecal Contents and Feces

scientific article

Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets.

scientific article published on 2 February 2018

Integration of metabolomics and expression of glycerol-3-phosphate acyltransferase (GPAM) in breast cancer-link to patient survival, hormone receptor status, and metabolic profiling

scientific article published on 15 December 2011

Integration of metabolomics, transcriptomics, and microRNA expression profiling reveals a miR-143-HK2-glucose network underlying zinc-deficiency-associated esophageal neoplasia

scientific article published on 9 June 2017

Interaction of Gut Microbiota and High-Sodium, Low-Potassium Diet in Altering Plasma Triglyceride Profiles Revealed by Lipidomics Analysis

scientific article published on 28 November 2019

International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis

scientific article published on 08 November 2019

Interstitial Cystitis-Associated Urinary Metabolites Identified by Mass-Spectrometry Based Metabolomics Analysis

scientific article published on 15 December 2016

Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice

scientific article published on 22 February 2021

Intratracheal instillation of pravastatin for the treatment of murine allergic asthma: a lung-targeted approach to deliver statins

scientific article published on May 2015

Introducing the USA Plant, Algae and Microbial Metabolomics Research Coordination Network (PAMM-NET)

scientific article published on 20 December 2014

Investigation of metabolomic blood biomarkers for detection of adenocarcinoma lung cancer

scientific article

Iron-dependent modifications of the flower transcriptome, proteome, metabolome, and hormonal content in an Arabidopsis ferritin mutant.

scientific article published on 16 May 2013

Is diabetes mellitus-linked amino acid signature associated with β-blocker-induced impaired fasting glucose?

scientific article

L-arginine supplementation in severe asthma

scientific article published on 04 June 2020

LC-MS-Based Lipidomics and Automated Identification of Lipids Using the LipidBlast In-Silico MS/MS Library

scientific article

Laboratory Screening Protocol to Identify Novel Oleaginous Yeasts

scientific article published on 01 January 2019

Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins

scientific article published in January 2004

LipidBlast in silico tandem mass spectrometry database for lipid identification

scientific article

LipidBlast templates as flexible tools for creating new in-silico tandem mass spectral libraries

scientific article

Lipidomic Analysis of Chlamydomonas reinhardtii under Nitrogen and Sulfur Deprivation

scientific article

Long-chain fatty acid combustion rate is associated with unique metabolite profiles in skeletal muscle mitochondria

scientific article

Longitudinal Metabolome-Wide Signals Prior to the Appearance of a First Islet Autoantibody in Children Participating in the TEDDY Study

scientific article published on 06 February 2020

MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics

scientific article (publication date: 2015)

MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis

scientific article (publication date: June 2015)

MS2Analyzer: A software for small molecule substructure annotations from accurate tandem mass spectra

scientific article

Mass Spectral Feature List Optimizer (MS-FLO): A Tool To Minimize False Positive Peak Reports in Untargeted Liquid Chromatography-Mass Spectroscopy (LC-MS) Data Processing.

scientific article

Mass Spectrometry-Based Metabolomics Reveals a Concurrent Action of Several Chemical Mechanisms in <i>Arabidopsis-Fusarium oxysporum</i> Compatible and Incompatible Interactions

scientific article published on 11 December 2020

Mass spectral fragmentation of trimethylsilylated small molecules

scientific article

Mass spectrometry-based metabolic profiling reveals different metabolite patterns in invasive ovarian carcinomas and ovarian borderline tumors

scientific article published in November 2006

Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research

scientific article (publication date: 12 June 2009)

Maternal Pyrroloquinoline Quinone Supplementation Improves Offspring Liver Bioactive Lipid Profiles throughout the Lifespan and Protects against the Development of Adult NAFLD

scientific article published in 2022

Members of a Novel Kinase Family (DUF1537) Can Recycle Toxic Intermediates into an Essential Metabolite

scientific article published on 13 June 2016

Merging pharmacometabolomics with pharmacogenomics using '1000 Genomes' single-nucleotide polymorphism imputation: selective serotonin reuptake inhibitor response pharmacogenomics

scientific article

Mesenchymal stem cell-based therapy for ischemic stroke

Mesothelial Cell HIF1α Expression Is Metabolically Downregulated by Metformin to Prevent Oncogenic Tumor-Stromal Crosstalk

scientific article published on 01 December 2019

MetaMapR: pathway independent metabolomic network analysis incorporating unknowns

scientific article published on 5 April 2015

MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity

scientific article

Metabolic Control over mTOR-Dependent Diapause-like State

scientific article published on 01 January 2020

Metabolic Reprogramming by MYCN Confers Dependence on the Serine-Glycine-One-Carbon Biosynthetic Pathway

scientific article published on 14 May 2019

Metabolic acclimation to excess light intensity in Chlamydomonas reinhardtii ⬇️

scientific article published on February 28, 2013

Metabolic changes associated with methionine stress sensitivity in MDA-MB-468 breast cancer cells

scientific article published on 2 May 2016

Metabolic networks of Cucurbita maxima phloem

scientific article published in March 2003

Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems

scientific article

Metabolic profiling of laser microdissected vascular bundles of Arabidopsis thaliana ⬇️

scientific article

Metabolic variations in different citrus rootstock cultivars associated with different responses to Huanglongbing

scientific article published on 20 May 2016

Metabolite Damage and Metabolite Damage Control in Plants

scientific article

Metabolite Measurement: Pitfalls to Avoid and Practices to Follow

scientific article published on June 2017

Metabolite Profiling of Arabidopsis Inoculated with Alternaria brassicicola Reveals That Ascorbate Reduces Disease Severity

scientific article published on 01 December 2012

Metabolite identification: are you sure? And how do your peers gauge your confidence?

article

Metabolite profile changes in xylem sap and leaf extracts of strategy I plants in response to iron deficiency and resupply ⬇️

scientific article published on October 25, 2011

Metabolite profiling for plant functional genomics

scientific article (publication date: November 2000)

Metabolite profiling in Arabidopsis

scientific article published on 01 January 2006

Metabolite profiling in blood plasma

scientific article

Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation

scientific article published on 23 November 2005

Metabolite profiling of human colon carcinoma--deregulation of TCA cycle and amino acid turnover

scientific article published on 18 September 2008

Metabolite-related dietary patterns and the development of islet autoimmunity

scientific article published on 15 October 2019

Metabolomic Assessment of Key Maize Resources: GC-MS and NMR Profiling of Grain from B73 Hybrids of the Nested Association Mapping (NAM) Founders and of Geographically Diverse Landraces

scientific article

Metabolomic Response of Chlamydomonas reinhardtii to the Inhibition of Target of Rapamycin (TOR) by Rapamycin

scientific article published on January 1, 2013

Metabolomic analysis using porcine skin: a pilot study of analytical techniques

scientific article published on 15 June 2014

Metabolomic and transcriptomic analysis of the rice response to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae ⬇️

scientific article published on May 27, 2010

Metabolomic and transcriptomic changes induced by overnight (16 h) fasting in male and female Sprague-Dawley rats

scientific article published on 25 March 2011

Metabolomic characteristics of cholesterol-induced non-obese nonalcoholic fatty liver disease in mice

scientific article published on 21 July 2017

Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm

scientific article published on 28 April 2006

Metabolomic markers of altered nucleotide metabolism in early stage adenocarcinoma

scientific article

Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion of 9 Cell–Cell Signaling Molecules from Sympathoadrenal Chromaffin Cells in the Presence of Lithium

scientific article published on 23 January 2019

Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results

scientific article published on 24 April 2006

Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools

scientific article

Metabolomics and transcriptomics identify pathway differences between visceral and subcutaneous adipose tissue in colorectal cancer patients: the ColoCare study

scientific article published on 8 July 2015

Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function"

scientific article

Metabolomics by Gas Chromatography-Mass Spectrometry: Combined Targeted and Untargeted Profiling

scientific article

Metabolomics continues to expand: highlights from the 2015 metabolomics conference

Metabolomics enables precision medicine: "A White Paper, Community Perspective"

scientific article

Metabolomics in psoriatic disease: pilot study reveals metabolite differences in psoriasis and psoriatic arthritis

scientific article published on 21 October 2014

Metabolomics insights into pathophysiological mechanisms of interstitial cystitis

scientific article

Metabolomics of human breast cancer: new approaches for tumor typing and biomarker discovery

scientific article

Metabolomics reveals amino acids contribute to variation in response to simvastatin treatment

scientific article

Metabolomics standards initiative: ontology working group work in progress

Metabolomics – the link between genotypes and phenotypes

scientific article (publication date: 2002)

Metabolomics-related nutrient patterns at seroconversion and risk of progression to type 1 diabetes

scientific article published on 20 July 2020

Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration

scientific article

Mevalonate Pathway Promiscuity Enables Noncanonical Terpene Production

scientific article published on 02 October 2019

Microbe-derived uremic solutes enhance thrombosis potential in the host

scientific article published on 19 December 2023

Mid-gestation serum lipidomic profile associations with spontaneous preterm birth are influenced by body mass index

scientific article published on 17 November 2020

Minimum reporting standards for plant biology context information in metabolomic studies

article

Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics

scientific article published on 01 December 2003

Multi-Omics Analyses Detail Metabolic Reprogramming in Lipids, Carnitines, and Use of Glycolytic Intermediates between Prostate Small Cell Neuroendocrine Carcinoma and Prostate Adenocarcinoma

scientific article published on 26 April 2019

Multiplatform Mass Spectrometry-Based Approach Identifies Extracellular Glycolipids of the Yeast Rhodotorula babjevae UCDFST 04-877.

scientific article

Muscle uncoupling protein 3 overexpression mimics endurance training and reduces circulating biomarkers of incomplete β-oxidation

scientific article

Natural genetic variation of freezing tolerance in Arabidopsis

scientific article published in September 2006

Novel plasma biomarker of atenolol-induced hyperglycemia identified through a metabolomics-genomics integrative approach

scientific article published on 13 July 2016

Novel theranostic opportunities offered by characterization of altered membrane lipid metabolism in breast cancer progression

scientific article published on 17 March 2011

Obesogenic diets alter metabolism in mice

scientific article published on 11 January 2018

Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in mice

scientific article published on 2 October 2017

Pathway analysis of kidney cancer using proteomics and metabolic profiling

scientific article

Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network

scientific article

Perspective: Dietary Biomarkers of Intake and Exposure-Exploration with Omics Approaches

scientific article published on 01 March 2020

Pharmacogenetics meets metabolomics: discovery of tryptophan as a new endogenous OCT2 substrate related to metformin disposition

scientific article

Pharmacometabolomic Assessment of Metformin in Non-diabetic, African Americans

scientific article published on 14 June 2016

Pharmacometabolomic signature links simvastatin therapy and insulin resistance

scientific article

Pharmacometabolomic signature of ataxia SCA1 mouse model and lithium effects

scientific article

Pharmacometabolomics of response to sertraline and to placebo in major depressive disorder - possible role for methoxyindole pathway

scientific article

Pharmacometabolomics reveals racial differences in response to atenolol treatment

scientific article

Pharmacophore hybridisation and nanoscale assembly to discover self-delivering lysosomotropic new-chemical entities for cancer therapy

scientific article published on 15 September 2020

Plant metabolomics: the missing link in functional genomics strategies

article

Plant-driven repurposing of the ancient S-adenosylmethionine repair enzyme homocysteine S-methyltransferase.

scientific article published in October 2014

PlantMetabolomics.org: a web portal for plant metabolomics experiments

scientific article published on 10 February 2010

Plants utilize a highly conserved system for repair of NADH and NADPH hydrates

scientific article published on 05 March 2014

Plasma amino acid and metabolite signatures tracking diabetes progression in the UCD-T2DM rat model

scientific article published on 19 April 2016

Plasma metabolomic profiles reflective of glucose homeostasis in non-diabetic and type 2 diabetic obese African-American women

scientific article

Potential Impact and Study Considerations of Metabolomics in Cardiovascular Health and Disease: A Scientific Statement From the American Heart Association

scientific article

Potential of metabolomics as a functional genomics tool.

scientific article

Preanalytical Processing and Biobanking Procedures of Biological Samples for Metabolomics Research: A White Paper, Community Perspective (for “Precision Medicine and Pharmacometabolomics Task Group”—The Metabolomics Society Initiative)

scientific article published on 19 June 2018

Predictors of oxylipins in a healthy pediatric population

scientific article published on 29 July 2020

Primed mesenchymal stem cells package exosomes with metabolites associated with immunomodulation

scientific article published on 26 March 2019

Prioritization of metabolic genes as novel therapeutic targets in estrogen-receptor negative breast tumors using multi-omics data and text mining

article

Prioritization of metabolic genes as novel therapeutic targets in estrogen-receptor negative breast tumors using multi-omics data and text mining.

scientific article published on 11 June 2019

Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks

scientific article published in January 2004

Profiling at mRNA, protein, and metabolite levels reveals alterations in renal amino acid handling and glutathione metabolism in kidney tissue of Pept2-/- mice

scientific article

Profiling of Disease-Related Metabolites in Grapevine Internode Tissues Infected with Agrobacterium vitis

scientific article published on December 2016

Profiling the human intestinal environment under physiological conditions

scientific article published in 2023

Prognostic impact of AMP-activated protein kinase expression in ovarian carcinoma: correlation of protein expression and GC/TOF-MS-based metabolomics

scientific article published on 25 January 2011

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

scientific article (publication date: August 2008)

Proposed minimum reporting standards for chemical analysis

scientific article (publication date: September 2007)

Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival

scientific article published on 27 October 2016

Proteomics reveals NNMT as a master metabolic regulator of cancer-associated fibroblasts

scientific article published on 01 May 2019

Qualitative analysis of algal secretions with multiple mass spectrometric platforms

scientific article published on 04 May 2012

Quality control for plant metabolomics: reporting MSI-compliant studies

scientific article published on February 2008

Quantum Chemistry Calculations for Metabolomics

scientific article published in 2021

RORγ is a targetable master regulator of cholesterol biosynthesis in a cancer subtype

scientific article published on 11 October 2019

Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids

scientific article published on 26 December 2018

Registered report: The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate

scientific article

Remodeling Lipids in the Transition from Chronic Liver Disease to Hepatocellular Carcinoma

scientific article published on 30 December 2020

Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue - a GC-TOFMS based metabolomics study

scientific article

Replication Study: The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate

scientific article published on 27 June 2017

Reprogramming metabolism by histone methyltransferase NSD2 drives endocrine resistance via coordinated activation of pentose phosphate pathway enzymes

scientific article

Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods

scientific article

Rethinking the PDH Bypass and GABA Shunt as Thiamin-Deficiency Workarounds

scientific article published on 13 August 2019

Retip: retention time prediction for compound annotation in untargeted metabolomics

scientific article published on 10 May 2020

Rifaximin Exerts Beneficial Effects Independent of its Ability to Alter Microbiota Composition

scientific article

Robust detection and verification of linear relationships to generate metabolic networks using estimates of technical errors

scientific article

SPLASH, a hashed identifier for mass spectra ⬇️

scientific article

SUN-023 HNF4a Isoforms Regulate the Circadian Balance between Carbohydrate and Fatty Acid Metabolism in the Liver.

scientific article published on 30 April 2019

Salvage of the 5-deoxyribose byproduct of radical SAM enzymes

scientific article published in Nature Communications

Sebaceous gland abnormalities in fatty acyl CoA reductase 2 (Far2) null mice result in primary cicatricial alopecia

scientific article published in PLoS ONE

Serum and urinary metabolomics and outcomes in cirrhosis

scientific article published on 27 September 2019

Serum phosphatidylethanolamine levels distinguish benign from malignant solitary pulmonary nodules and represent a potential diagnostic biomarker for lung cancer.

scientific article

Serum triglycerides in Alzheimer disease: Relation to neuroimaging and CSF biomarkers

scientific article published on 01 May 2020

Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology

scientific article published on 05 September 2019

SetupX--a public study design database for metabolomic projects

scientific article

Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry

scientific article (publication date: 2007)

Sex-associated differences in baseline urinary metabolites of healthy adults

scientific article published in Scientific Reports

Simultaneous production of intracellular triacylglycerols and extracellular polyol esters of fatty acids by Rhodotorula babjevae and Rhodotorula aff. paludigena

scientific article

Skeletal muscle interstitial fluid metabolomics at rest and associated with an exercise bout: application in rats and humans

scientific article published on 06 November 2018

Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics

scholarly article by Ivana Blaženović et al published 10 May 2018 in Metabolites

Software platform virtualization in chemistry research and university teaching

scientific article

Soluble epoxide hydrolase inhibitors reduce the development of atherosclerosis in apolipoprotein e-knockout mouse model

scientific article published on October 2008

Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification

scientific article published in 2021

Sphingolipid Metabolic Pathway Impacts Thiazide Diuretics Blood Pressure Response: Insights From Genomics, Metabolomics, and Lipidomics.

scientific article published on 29 December 2017

Statistical methods for comparing comprehensive two-dimensional gas chromatography–time-of-flight mass spectrometry results: Metabolomic analysis of mouse tissue extracts

article

Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry

scientific article published on 17 November 2016

Structure Annotation of All Mass Spectra in Untargeted Metabolomics

scientific article published on 16 January 2019

Structure of human GABAB receptor in an inactive state

scientific article published on 24 June 2020

Sugar Alcohols Have a Key Role in Pathogenesis of Chronic Liver Disease and Hepatocellular Carcinoma in Whole Blood and Liver Tissues

scientific article published on 19 February 2020

System response of metabolic networks in Chlamydomonas reinhardtii to total available ammonium

scientific article

Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data

scientific article published on 19 February 2019

Systemic Metabolomic Changes in Blood Samples of Lung Cancer Patients Identified by Gas Chromatography Time-of-Flight Mass Spectrometry

scientific article published on 9 April 2015

Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia

scientific article published on 7 April 2015

Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of Arabidopsis plants ⬇️

scientific article published on 15 April 2005

TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes

scientific article published on 11 October 2019

Temporal metabolomic responses of cultured HepG2 liver cells to high fructose and high glucose exposures

scientific article published in June 2015

The Chemical Translation Service--a web-based tool to improve standardization of metabolomic reports

peer-reviewed article

The Emerging and Diverse Roles of Bis(monoacylglycero) Phosphate Lipids in Cellular Physiology and Disease

scientific article published on 29 October 2020

The Human Serum Metabolome of Vitamin B-12 Deficiency and Repletion, and Associations with Neurological Function in Elderly Adults

scientific article published on 09 August 2017

The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals

article

The Response ofArabidopsisto Co-cultivation with Clover

scientific article published in January 2013

The foxtail millet (Setaria italica) terpene synthase gene family

scientific article published on 13 April 2020

The metabolic profiles of transgenic cucumber lines vary with different chromosomal locations of the transgene

scientific article

The metabolic signature related to high plant growth rate in Arabidopsis thaliana ⬇️

scientific article (publication date: 13 March 2007)

The metabolite repair enzyme Nit1 is a dual-targeted amidase that disposes of damaged glutathione in Arabidopsis

scientific article published on 19 February 2019

The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition

scientific article

The metabolomics standards initiative (MSI)

scientific article

The use of metabolomics in population-based research

scientific article

The volatile compound BinBase mass spectral database

scientific article (publication date: 4 August 2011)

Thioproline formation as a driver of formaldehyde toxicity in Escherichia coli

scientific article published on 17 April 2020

Tissue-Specific Transcriptome Analysis Reveals Candidate Genes for Terpenoid and Phenylpropanoid Metabolism in the Medicinal Plant

scientific article published on 07 March 2019

Toward Merging Untargeted and Targeted Methods in Mass Spectrometry-Based Metabolomics and Lipidomics

scientific article

Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites.

scientific article

Ultrafast Polyphenol Metabolomics of Red Wines Using MicroLC-MS/MS.

scientific article published on 23 December 2015

Umbilical cord blood metabolomics reveal distinct signatures of dyslipidemia prior to bronchopulmonary dysplasia and pulmonary hypertension

scientific article published on 16 August 2018

Untargeted metabolomics identifies trimethyllysine, a TMAO-producing nutrient precursor, as a predictor of incident cardiovascular disease risk.

scientific article

Using Accurate Mass Gas Chromatography-Mass Spectrometry with the MINE Database for Epimetabolite Annotation.

scientific article published on 6 September 2017

Using MS-FINDER for identifying 19 natural products in the CASMI 2016 contest

scientific article published on 09 December 2016

Using a lipidomics approach for nutritional phenotyping in response to a test meal containing gamma-linolenic acid

article

Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics

scientific article published on June 2015

Utilizing cooled liquid chromatography and chemical derivatization to separate and quantify C3-epimers of 25-hydroxy vitamin D and low abundant 1α,25(OH)2D3: Application in a pediatric population

scientific article published on 10 November 2019

Validating Quantitative Untargeted Lipidomics Across Nine Liquid Chromatography-High-Resolution Mass Spectrometry Platforms.

scientific article published on 24 October 2017

Volatile organic compound (VOC) profiling of citrus tristeza virus infection in sweet orange citrus varietals using thermal desorption gas chromatography time of flight mass spectrometry (TD-GC/TOF-MS)

article

What are the obstacles for an integrated system for comprehensive interpretation of cross-platform metabolic profile data?

scientific article published in December 2009

Whey protein supplementation does not alter plasma branched-chained amino acid profiles but results in unique metabolomics patterns in obese women enrolled in an 8-week weight loss trial

scientific article

Zinc treatment reverses and anti-Zn-regulated miRs suppress esophageal carcinomas in vivo

scientific article published on 16 May 2023

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