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List of works by Jarl Wikberg

A unified proteochemometric model for prediction of inhibition of cytochrome p450 isoforms

scientific article (publication date: 2013)

An eScience-Bayes strategy for analyzing omics data

scientific article

Benchmarking study of parameter variation when using signature fingerprints together with support vector machines

scientific article published on 28 October 2014

Bioclipse 2: a scriptable integration platform for the life sciences ⬇️

scientific article

Bioclipse-R: integrating management and visualization of life science data with statistical analysis

scientific article

Bioclipse: an open source workbench for chemo- and bioinformatics ⬇️

scientific article published on 22 February 2007

Brunn: an open source laboratory information system for microplates with a graphical plate layout design process

scientific article

Chemoinformatics Taking Biology into Account: Proteochemometrics

Chronic infusion of a melanocortin receptor agonist modulates dopamine receptor binding in the rat brain

scientific article published in February 2002

Classification of G-protein coupled receptors by alignment-independent extraction of principal chemical properties of primary amino acid sequences

scientific article

CryoProtect: A Web Server for Classifying Antifreeze Proteins from Nonantifreeze Proteins

scholarly article in Journal of Chemistry, 2017

Design and evaluation of substrate-based octapeptide and non substrate-based tetrapeptide inhibitors of dengue virus NS2B-NS3 proteases

scientific article published on 12 April 2013

Enzymatic analysis of recombinant Japanese encephalitis virus NS2B(H)-NS3pro protease with fluorogenic model peptide substrates

scientific article

Exploring the epigenetic drug discovery landscape

scientific article published on 28 February 2017

Extending proteochemometric modeling for unraveling the sorption behavior of compound–soil interaction

scholarly article by Watshara Shoombuatong et al published February 2016 in Chemometrics and Intelligent Laboratory Systems

HemoPred: a web server for predicting the hemolytic activity of peptides.

scientific article

Illuminating the origins of spectral properties of green fluorescent proteins via proteochemometric and molecular modeling

scientific article published on 12 August 2014

Improved approach for proteochemometrics modeling: application to organic compound--amine G protein-coupled receptor interactions

scientific article

Improving the affinity of antigens for mutated antibodies by use of statistical molecular design

scientific article

Interaction model based on local protein substructures generalizes to the entire structural enzyme-ligand space.

scientific article

Introduction to Pharmaceutical Bioinformatics

Third edition of the book originally published in 2010

Large-scale ligand-based predictive modelling using support vector machines

scientific article (publication date: 2016)

Ligand-based target prediction with signature fingerprints

scientific article published on 3 October 2014

Linking Open Drug Data to Cheminformatics and Proteochemometrics ⬇️

conference paper

Linking the Resource Description Framework to cheminformatics and proteochemometrics ⬇️

scientific article

Melanocortin 2, 3 and 4 Receptor Gene Expressions are Downregulated in CD8+ T Cytotoxic Lymphocytes and CD19+ B Lymphocytes in Rheumatoid Arthritis Responding to TNF-α Inhibition

scientific article published on 20 April 2017

Melanocortin receptors form constitutive homo- and heterodimers

scientific article

N-alkylated dipeptide amides and related structures as imitations of the melanocortins' active core

scientific article published on October 2005

Origin of aromatase inhibitory activity via proteochemometric modeling

scientific article published on 12 May 2016

Origin of aromatase inhibitory activity via proteochemometric modeling

article

PepBio: predicting the bioactivity of host defense peptides

scientific article published in 2017

Prediction of indirect interactions in proteins

scientific article

Proteochemometric mapping of the interaction of organic compounds with melanocortin receptor subtypes

scientific article

Proteochemometric model for predicting the inhibition of penicillin-binding proteins

scientific article published on 26 October 2014

Proteochemometric modeling of HIV protease susceptibility

scientific article

Proteochemometric modeling of drug resistance over the mutational space for multiple HIV protease variants and multiple protease inhibitors

scientific article published in May 2009

Proteochemometric modeling of the susceptibility of mutated variants of the HIV-1 virus to reverse transcriptase inhibitors

scientific article

Proteochemometric modeling reveals the interaction site for Trp9 modified alpha-MSH peptides in melanocortin receptors.

scientific article

Proteochemometrics analysis of substrate interactions with dengue virus NS3 proteases

scientific article

Proteochemometrics modeling of the interaction of amine G-protein coupled receptors with a diverse set of ligands

scientific article published in June 2002

Proteochemometrics: A Tool for Modeling the Molecular Interaction Space

article published in 2005

QSAR and proteo-chemometric analysis of the interaction of a series of organic compounds with melanocortin receptor subtypes

scientific article

Reductive amination products containing naphthalene and indole moieties bind to melanocortin receptors

scientific article published on April 2002

Resistin Gene Expression is Downregulated in CD4(+) T Helper Lymphocytes and CD14(+) Monocytes in Rheumatoid Arthritis Responding to TNF-α Inhibition.

scientific article published on 19 July 2016

Roles of d-Amino Acids on the Bioactivity of Host Defense Peptides

scientific article

Rough set-based proteochemometrics modeling of G-protein-coupled receptor-ligand interactions

scientific article published in April 2006

Services for prediction of drug susceptibility for HIV proteases and reverse transcriptases at the HIV drug research centre.

scientific article

Targeting melanocortin receptors: an approach to treat weight disorders and sexual dysfunction

scientific article

Towards Predicting the Cytochrome P450 Modulation: From QSAR to proteochemometric modeling

article

Towards Proteome-Wide Interaction Models Using the Proteochemometrics Approach

scientific article published on 28 June 2010

Towards interoperable and reproducible QSAR analyses: Exchange of datasets

scientific article (publication date: 2010)

Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling

scientific article

XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services

scientific article

osFP: a web server for predicting the oligomeric states of fluorescent proteins.

scientific article published on 20 December 2016

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