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List of works by Antoine Danchin

2-Ketobutyrate: a putative alarmone of Escherichia coli

scientific article published on January 1983

2-Ketoglutarate as a possible regulatory metabolite involved in cyclic AMP-dependent catabolite repression in Escherichia coli K12.

scientific article

3'-5' phosphoadenosine phosphate is an inhibitor of PARP-1 and a potential mediator of the lithium-dependent inhibition of PARP-1 in vivo

scientific article

3-phenylpropionate catabolism and the Escherichia coli oxidative stress response

scientific article

A New Transmission Route for the Propagation of the SARS-CoV-2 Coronavirus

scientific article published on 26 December 2020

A Novel H-NS-like protein from an antarctic psychrophilic bacterium reveals a crucial role for the N-terminal domain in thermal stability

scientific article published in Journal of Biological Chemistry

A SeqA hyperstructure and its interactions direct the replication and sequestration of DNA.

scientific article

A TY1 element is inserted in the CYR1 control region of Saccharomyces cerevisiae strain AB320

scientific article published on 01 July 1987

A Xanthomonas campestris pv. campestris protein similar to catabolite activation factor is involved in regulation of phytopathogenicity

scientific article published on October 1990

A brief history of genome research and bioinformatics in France

scientific article

A challenge to vaccinology: Living organisms trap information

scientific article published in 2009

A double epidemic model for the SARS propagation

scientific article

A dynamic molecular model for transfer RNA

article

A gene encoding a tyrosine tRNA synthetase is located near sacS in Bacillus subtilis.

scientific article published on January 1991

A locus involved in kanamycin, chloramphenicol and L-serine resistance is located in the bglY-galU region of the Escherichia coli K12 chromosome

scientific article published in August 1989

A new method for specific labelling of tRNA : Preliminary results on yeast tRNAPhe ⬇️

scientific article published on January 1, 1972

A new technique for selection of sensitive and auxotrophic mutants of E. coli: Isolation of a strain sensitive to an excess of one-carbon metabolites ⬇️

scientific article published on February 15, 1977

A new transmission route for the propagation of the SARS-CoV-2 coronavirus

scientific article

A parasite vector-host epidemic model for TSE propagation.

scientific article published on March 2007

A path from predation to mutualism ⬇️

scientific article published on September 1, 2010

A phylogenetic view of bacterial ribonucleases

scientific article published on January 2009

A pyruvate-stimulated adenylate cyclase has a sequence related to the fes/fps oncogenes and to eukaryotic cyclases

scientific article published in May 1991

A rapid test for the rel a mutation in E. coli

scientific article published on 01 April 1976

A selective theory for the epigenetic specification of the monospecific antibody production in single cell lines

scientific article

A strand-specific model for chromosome segregation in bacteria.

scientific article published on August 2003

A tale of two oxidation states: bacterial colonization of arsenic-rich environments

scientific article

A theory of the epigenesis of neuronal networks by selective stabilization of synapses

scientific article

A variable gene in a conserved region of the Helicobacter pylori genome: isotopic gene replacement or rapid evolution?

scientific article published on 27 April 2008

Adenylate Cyclases

Adenylyl cyclases: a heterogeneous class of ATP-utilizing enzymes.

scientific article published on January 1994

Aeromonas hydrophila adenylyl cyclase 2: a new class of adenylyl cyclases with thermophilic properties and sequence similarities to proteins from hyperthermophilic archaebacteria.

scientific article

Affinity labeling of rabbit muscle myosin with a cobalt (3)-adenosine triphosphate complex

scientific article published in June 1974

Affinity labeling of the adenosine 5'-monophosphate binding site of rabbit muscle glycogen phosphorylase b with an adenosine 5'-monophosphate-cobalt(3) complex

scientific article published in May 1973

An Interplay between Metabolic and Physicochemical Constraints: Lessons from the Psychrophilic Prokaryote Genomes

An analysis of determinants of amino acids substitution rates in bacterial proteins

scientific article published on 31 October 2003

An updated metabolic view of the Bacillus subtilis 168 genome

scientific article published on 21 February 2013

Anaerobic transcription activation in Bacillus subtilis: identification of distinct FNR-dependent and -independent regulatory mechanisms

scientific article published on December 1995

Analysis of a Bacillus subtilis genome fragment using a co-operative computer system prototype

scientific article published on November 1995

Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes

article

Analysis of the ptsH-ptsI-crr region in Escherichia coli K-12: evidence for the existence of a single transcriptional unit ⬇️

scientific article published on December 1, 1984

Analysis of the ptsH-ptsI-crr region in Escherichia coli K-12: nucleotide sequence of the ptsH gene

scientific article published in January 1985

Antibodies against a fused 'lacZ-yeast mitochondrial intron' gene product allow identification of the mRNA maturase encoded by the fourth intron of the yeast cob-box gene

scientific article

Antibodies against synthetic oligopeptides allow identification of the mRNA-maturase encoded by the second intron of the yeast cob-box gene.

scientific article

Antifragility and Tinkering in Biology (and in Business) Flexibility Provides an Efficient Epigenetic Way to Manage Risk

scientific article published on 29 November 2011

Antisense expression at the ptsH-ptsI locus of Escherichia coli.

scientific article

AstR-AstS, a new two-component signal transduction system, mediates swarming, adaptation to stationary phase and phenotypic variation in Photorhabdus luminescens

scientific article

Bacillus subtilis F0F1 ATPase: DNA sequence of the atp operon and characterization of atp mutants

scientific article

Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement

scientific article published in January 2018

Bacteria as computers making computers

scientific article

Bacteria in the ageing gut: did the taming of fire promote a long human lifespan?

scientific article published on 01 June 2018

Bacterial DNA strand compositional asymmetry: Response

article

Bacterial niche-specific genome expansion is coupled with highly frequent gene disruptions in deep-sea sediments

scientific article (publication date: 2011)

Bacterial variations on the methionine salvage pathway

scientific article

Base composition bias might result from competition for metabolic resources.

scientific article published in June 2002

Beneficial biological warfare.

scientific article published in August 2006

Bifunctional structure of two adenylyl cyclases from the myxobacterium Stigmatella aurantiaca

scientific article published on 01 December 1997

Binding of 3'-anthraniloyl-2'-deoxy-ATP to calmodulin-activated adenylate cyclase from Bordetella pertussis and Bacillus anthracis

scientific article

Binding of metal ions to macromolecules through an NMR spectrometric method of investigation

scientific article published in November 1969

Biological macromolecules labelling with covalent complexes of magnesium analogs

scientific article published on 01 January 1973

Bordetella pertussis adenylate cyclase: the gene and the protein

scientific article

By way of introduction: Some constraints of the cell physics that are usually forgotten, but should be taken into account for in silico genome analysis

scientific article published on 01 January 1996

CMP kinase from Escherichia coli is structurally related to other nucleoside monophosphate kinases.

scientific article

Catabolite regulation of the pta gene as part of carbon flow pathways in Bacillus subtilis.

scientific article

Catabolite repression in Escherichia coli mutants lacking cyclic AMP receptor protein

scientific article

Cells need safety valves

scientific article published on July 2009

Characterization of Escherichia coli adenylate cyclase mutants with modified regulation

scientific article published in September 1990

Characterization of NrnA homologs from Mycobacterium tuberculosis and Mycoplasma pneumoniae

scientific article published on 23 November 2011

Characterization of polyamine synthesis pathway in Bacillus subtilis 168

scientific article published on 01 August 1998

Chemical reactivity drives spatiotemporal organisation of bacterial metabolism

scientific article published on 04 December 2014

Cinnamic acid, an autoinducer of its own biosynthesis, is processed via Hca enzymes in Photorhabdus luminescens

scientific article

Classification between normal and tumor tissues based on the pair-wise gene expression ratio

scientific article

Cloning and assembly strategies in microbial genome projects.

scientific article

Cloning and characterization of the pH 2.5 acid phosphatase gene, appA: cyclic AMP mediated negative regulation

scientific article

Cloning and expression of mouse-brain calmodulin as an activator of Bordetella pertussis adenylate cyclase in Escherichia coli.

scientific article published on August 1989

Cloning and expression of the calmodulin-sensitive Bacillus anthracis adenylate cyclase in Escherichia coli

scientific article published on 01 April 1988

Cloning and sequence of the Bordetella bronchiseptica adenylate cyclase-hemolysin-encoding gene: comparison with the Bordetella pertussis gene

scientific article

Cloning of the second adenylate cyclase gene (cya2) from Rhizobium meliloti F34: sequence similarity to eukaryotic cyclases

scientific article

Codon usage and lateral gene transfer in Bacillus subtilis

scientific article

Codon usage domains over bacterial chromosomes

scientific article

Coenzyme B12 synthesis as a baseline to study metabolite contribution of animal microbiota

scientific article

Colibri: a functional data base for the Escherichia coli genome

scientific article published on September 1993

Comparative analysis of the cya locus in enterobacteria and related gram-negative facultative anaerobes

scientific article published in January 1996

Comparison Between the Escherichia coli and Bacillus subtilis Genomes Suggests That a Major Function of Polynucleotide Phosphorylase is to Synthesize CDP

scientific article published on 01 February 1997

Conceptual sequel to biological expeditions at the time of global changes

scientific article published on 04 December 2018

Confidence, tolerance, and allowance in biological engineering: the nuts and bolts of living things

scientific article

Conformational transitions within the calmodulin-binding site of Bordetella pertussis adenylate cyclase studied by time-resolved fluorescence of Trp242 and circular dichroism

scientific article

Consent insufficient for data release-Response

scientific article published on 01 May 2019

Conserved genes in a path from commensalism to pathogenicity: comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228.

scientific article

Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays

scientific article (published 2005-01-01)

Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays

scientific article

Control of bacterial motility by environmental factors in polarly flagellated and peritrichous bacteria isolated from Lake Baikal.

scientific article

Conversion of methionine to cysteine in Bacillus subtilis and its regulation

scientific journal article

Cooperative Binding of Manganese (II) to Transfer RNA

scientific article published on 01 November 1970

Cooperative computer system for genome sequence analysis

scientific article published on 01 January 1995

Cooperative phenomena in binding and activation of Bordetella pertussis adenylate cyclase by calmodulin

scientific article published in Journal of Biological Chemistry

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

scientific article

Coping with inevitable accidents in metabolism

scientific article published on 29 December 2016

Correlation between the serine sensitivity and the derepressibility of the ilv genes in Escherichia coli relA- mutants

scientific article published on September 1978

CotA of Bacillus subtilis is a copper-dependent laccase

scientific journal article

Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human

scientific article

Cyclic AMP as a modulator of polarity in polycistronic transcriptional units

scientific article published on July 1979

Cyclic AMP synthesis in Escherichia coli strains bearing known deletions in the pts phosphotransferase operon.

scientific article

CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation.

scientific article

Cytoplasmic and periplasmic proteomic signatures of exponentially growing cells of the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC125.

scientific article

Cytosine methylation is not the major factor inducing CpG dinucleotide deficiency in bacterial genomes

scientific article published in June 2004

Deciphering global gene expression and regulation strategy in Escherichia coli during carbon limitation

scientific article published on 11 December 2018

Decrypting the H-NS-dependent regulatory cascade of acid stress resistance in Escherichia coli

scientific article

Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis

scientific article

Denaturation of UGA suppressor tRNATrp from E. coli

scientific article published on 01 January 1974

Description and application of a rapid method for genomic DNA direct sequencing

scientific article published on 01 May 2001

Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence

scientific article

Detection of new genes in a bacterial genome using Markov models for three gene classes

scientific article

Differences in binding of oligo C to charged and uncharged tRNA

scientific article published on 01 September 1970

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC.

scientific article

Does formylation of initiator tRNA act as a regulatory signal in E. coli?

scientific article published on 01 August 1973

Effect of an intramolecular cross-link on reversible denaturation in tryptophan transfer ribonucleic acid from Escherichia coli

scientific article published in 1973

Effect of mild acid pH on the functioning of bacterial membranes in Vibrio cholerae

scientific article

Effects of Site-Directed Mutagenesis of Protolytic Residues in Subunit I ofBacillus subtilis aa3-600 Quinol Oxidase. Role of Lysine 304 in Proton Translocation†

scientific article published in 1999

Escherichia coli UMP-kinase, a member of the aspartokinase family, is a hexamer regulated by guanine nucleotides and UTP

scientific article

Escherichia coli and Saccharomyces cerevisiae adenylate cyclases: a case of phylogenetic convergence?

scientific article published on January 1987

Escherichia coli molecular genetic map (1000 kbp): update I.

scientific article

Escherichia coli molecular genetic map (1500 kbp): update II.

scientific article

Escherichia coli response to exogenous pyrophosphate and analogs

scientific article published in January 2003

Essential Bacillus subtilis genes

scientific article

Essentiality, not expressiveness, drives gene-strand bias in bacteria.

scientific article published in August 2003

Evaluating the probability of CRISPR-based gene drive contaminating another species

scientific article published on 17 April 2020

Evidence for horizontal gene transfer in Escherichia coli speciation

scientific article

Evolutionary role of restriction/modification systems as revealed by comparative genome analysis

scientific article published on 01 June 2001

Explanation of Benveniste

scientific article published in Nature

Exploring the Penicillium marneffei genome.

scientific article

Expression profiling in reference bacteria: dreams and reality

scientific article

Extracting biological information from DNA arrays: an unexpected link between arginine and methionine metabolism in Bacillus subtilis

scientific article

Filling the gap between hns and adhE in Escherichia coli K12.

scientific article

Fluorescence of tryptophanyl-tRNATrp from E. coli ; An interaction between the indole and tRNA and its dependence on tRNA conformation

scientific article published on 01 March 1973

Formylation of initiator tRNA methionine in procaryotic protein synthesis: in vivo polarity in lactose operon expression

scientific article

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

scientific article

From adenylate cyclase to guanylate cyclase

scientific article published on 01 June 1992

From chemical metabolism to life: the origin of the genetic coding process

scientific article

From data banks to data bases

scientific article

From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions

scientific article published on 27 May 2016

From essential to persistent genes: a functional approach to constructing synthetic life.

scientific article published on 6 December 2012

From function to structure take the archaeal TRAM

scientific article published in 2016

From mitochondria to nuclei: regulation of split genes expression

article

From protein sequence to function

scientific article

Fructose catabolism in Xanthomonas campestris pv. campestris. Sequence of the PTS operon, characterization of the fructose-specific enzymes

scientific article

Fructose phosphotransferase system of Xanthomonas campestris pv. campestris: characterization of the fruB gene

scientific article published on September 1995

Functional analysis of subunits III and IV of Bacillus subtilis aa3-600 quinol oxidase by in vitro mutagenesis and gene replacement

article

Functional and evolutionary roles of long repeats in prokaryotes.

scientific article

Functional consequences of single amino acid substitutions in calmodulin-activated adenylate cyclase of Bordetella pertussis

scientific article published in July 1991

GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli

article

Gene essentiality determines chromosome organisation in bacteria

scientific article

Generation of immune specificity: a working hypothesis

scientific article published on January 1981

Generation of mutation hotspots in ageing bacterial colonies

scientific article published on 5 December 2016

Genetics of the PTS components in Escherichia coli K-12.

scientific article published on June 1989

Genome Diversity: A Grammar of Microbial Genomes

Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228).

scientific article published in September 2003

Genomes and evolution

scientific article published on 01 April 2003

Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns".

scientific article

Genomic changes in nucleotide and dinucleotide frequencies in Pasteurella multocida cultured under high temperature

scientific article

Genomic characterization of symbiotic mycoplasmas from the stomach of deep-sea isopod bathynomus sp.

scientific article published on 17 June 2016

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014

Genomics of an extreme psychrophile, Psychromonas ingrahamii

scientific article

Global analysis of genomic texts: the distribution of AGCT tetranucleotides in the Escherichia coli and Bacillus subtilis genomes predicts translational frameshifting and ribosomal hopping in several genes

scientific article published in April 1998

Global control of cysteine metabolism by CymR in Bacillus subtilis

scientific article

Global expression profile of Bacillus subtilis grown in the presence of sulfate or methionine

scientific article

Guanylate Cyclases

H-NS and H-NS-like proteins in Gram-negative bacteria and their multiple role in the regulation of bacterial metabolism

scientific article

Homeotopic transformation and the origin of translation

scientific article

Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes

scientific article

How essential are nonessential genes?

scientific article

Hydrothermally generated aromatic compounds are consumed by bacteria colonizing in Atlantis II Deep of the Red Sea.

scientific article

Hypothesis, analysis and synthesis, it's all Greek to me

scientific article published on 20 February 2019

Identification and isolation of a gene required for nitrate assimilation and anaerobic growth of Bacillus subtilis

scientific article published on February 1995

Identification of Bacillus subtilis CysL, a regulator of the cysJI operon, which encodes sulfite reductase

scientific article

Identification of a common domain in calmodulin-activated eukaryotic and bacterial adenylate cyclases

scientific article published on 01 March 1989

Identification of a novel nanoRNase in Bartonella

scientific article

Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome

article

Identification of residues essential for catalysis and binding of calmodulin in Bordetella pertussis adenylate cyclase by site-directed mutagenesis

scientific article

Identification of the Escherichia coli cya gene product as authentic adenylate cyclase

article

Identification of two fructose transport and phosphorylation pathways in Xanthomonas campestris pv. campestris

scientific article published in July 1991

Identification of yrrU as the Methylthioadenosine Nucleosidase Gene in Bacillus subtilis

article

Identification, characterization, and regulation of a cluster of genes involved in carbapenem biosynthesis in Photorhabdus luminescens

scientific article

Imagene: an integrated computer environment for sequence annotation and analysis

scientific article published in January 1999

Immunity after COVID-19: protection or sensitization ?

scientific article published on 23 May 2020

Immunochemical analysis of UMP kinase from Escherichia coli.

scientific article

Implication of gene distribution in the bacterial chromosome for the bacterial cell factory

scientific article

In vivo positive effects of exogenous pyrophosphate on Escherichia coli cell growth and stationary phase survival.

scientific article

Indigo: a World-Wide-Web review of genomes and gene functions

scientific article published on October 1998

Inert Co(III) complexes as reagents for nucleotide binding sites

scientific article

Infection of society. As diseases have evolved to exploit the holes in our defences, including weaknesses in society, we have to reconsider our way of life, otherwise they will continue to haunt us.

scientific article

Information of the chassis and information of the program in synthetic cells

scientific article published on 10 October 2009

Interpretable and accurate prediction models for metagenomics data

Intrinsic fluorescence of a truncated Bordetella pertussis adenylate cyclase expressed in Escherichia coli.

scientific article

Involvement of cyclic AMP and its receptor protein in the sensitivity of Escherichia coli K 12 toward serine: excretion of 2-ketobutyrate, a precursor of isoleucine

scientific article

Is a metabolic control for the doubling of the macromolecule synthesizing machinery possible ⬇️

scientific article published on January 1, 1979

Isobiology: A Variational Principle for Exploring Synthetic Life

scientific article published on 18 March 2020

Isolation and characterization of an Escherichia coli mutant affected in the regulation of adenylate cyclase

scientific article

Isolation and characterization of catalytic and calmodulin-binding domains of Bordetella pertussis adenylate cyclase

scientific article

Isolation and characterization of vicH, encoding a new pleiotropic regulator in Vibrio cholerae.

scientific article

Labeling and inhibition of myosin by 'in situ-oxidized' and presynthesized Co(III) complexes

scientific article published in January 1977

Labelling of biological macromolecules with covalent analogs of Magnesium. II. - Features of the chromic Cr (III) ion.

scientific article

Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.

scientific article published on April 2001

Les gènes du démon de Maxwell : est-il possible de construire une usine cellulaire ?

article

Life in the cold: a proteomic study of cold-repressed proteins in the antarctic bacterium pseudoalteromonas haloplanktis TAC125

scientific article

Life's demons: information and order in biology. What subcellular machines gather and process the information necessary to sustain life?

scientific article published on 6 May 2011

Linking selenium biogeochemistry to the sulfur-dependent biological detoxification of arsenic

scientific article published on 20 April 2012

METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database.

scientific article

Mapping of repetitive and non-repetitive DNA probes to chromosomes of the microsporidian Encephalitozoon cuniculi

scientific article published on May 1997

Mapping of sequenced genes (700 kbp) in the restriction map of the Escherichia coli chromosome

scientific article

Mapping the bacterial cell architecture into the chromosome

scientific article

Membrane integration of carbohydrate transport in bacteria

scientific article published on September 1987

Metabolic alterations mediated by 2-ketobutyrate in Escherichia coli K12.

scientific article published on January 1984

Microbial Biotechnology-2020.

scientific article published on 11 August 2016

Modulation of the lactose operon mRNA turnover by inhibitors of dihydrofolate reductase

scientific article published on October 1978

Molecular characterization of two cya mutations, cya-854 and cyaR1.

scientific article

Molecular cloning, sequencing, and physiological characterization of the qox operon from Bacillus subtilis encoding the aa3-600 quinol oxidase

scientific article (publication date: 25 May 1992)

Molecular diagnosis of human cancer type by gene expression profiles and independent component analysis

scientific article published on December 2005

Motivated research

scientific article published on July 2010

Mta, a global MerR-type regulator of the Bacillus subtilis multidrug-efflux transporters

scientific article published on 01 March 1999

MtnK, methylthioribose kinase, is a starvation-induced protein in Bacillus subtilis

scientific article

Multiple IS insertion sequences near the replication terminus in Escherichia coli K-12.

scientific article published in November 1991

Multiple control of flagellum biosynthesis in Escherichia coli: role of H-NS protein and the cyclic AMP-catabolite activator protein complex in transcription of the flhDC master operon

scientific article

Multiple states in macromolecules I. Qualitative model for a single nucleation process

article

Multiple states in macromolecules II. Entropic behaviour of tRNA degraded by polynucleotide phosphorylase

scientific article published on 01 January 1972

Mutational analysis of UMP kinase from Escherichia coli

scientific article

Mutational analysis of the enzyme IIIGlc of the phosphoenolpyruvate phosphotransferase system in Escherichia coli.

scientific article published in March 1992

Mutations in bglY, the structural gene for the DNA-binding protein H1 of Escherichia coli, increase the expression of the kanamycin resistance gene carried by plasmid pGR71.

scientific article

Mutations in bglY, the structural gene for the DNA-binding protein H1, affect expression of several Escherichia coli genes

scientific article

Mutations in the Global Transcription Factor CRP/CAP: Insights from Experimental Evolution and Deep Sequencing

scientific article published on 18 June 2019

Mutations in the bglY gene increase the frequency of spontaneous deletions in Escherichia coli K-12

scientific article published on January 1990

MvaT proteins in Pseudomonas spp.: a novel class of H-NS-like proteins

scientific article published on 01 November 2003

Myopic selection of novel information drives evolution

scientific article published on 21 August 2009

Natural selection and immortality

scientific article published on 22 August 2008

Nature or manufacture: What should we fear most?

scientific article

Nature, artifice and emerging diseases

scientific article published in May 2009

No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects.

scientific article published on 28 May 2018

Not every truth is good. The dangers of publishing knowledge about potential bioweapons

scientific article

Nucleotide sequence database policies

scientific article published in November 2002

Nucleotide sequence of a tRNA(leu)CAG gene from Rhizobium meliloti

scientific article published on January 1987

Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons

scientific article published on June 1998

Oligoribonuclease is a common downstream target of lithium-induced pAp accumulation in Escherichia coli and human cells

scientific article published on 8 May 2006

Omnipresent Maxwell's demons orchestrate information management in living cells

scientific article published on 01 March 2019

On our tiniest foes

scientific article published in June 2001

On proteins of the microsporidian invasive apparatus: complete sequence of a polar tube protein of Encephalitozoon cuniculi

scientific article

On the binding of tRNA to Escherichia coli RNA polymerase

scientific article published on August 1979

One-carbon metabolism, folate, zinc and translation

scientific article published on 09 March 2020

Ongoing evolution of strand composition in bacterial genomes

scientific article published on September 2001

Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4

scientific article

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

scientific article published in January 2009

Organization of the European Bacillus subtilis genome sequencing project

scientific article published on 01 February 1995

Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis

scientific article

Paralogous metabolism: S-alkyl-cysteine degradation in Bacillus subtilis

scientific article published on 15 August 2013

Perfect time or perfect crime?

scientific article published on February 2010

Permanence and Change

Persistence drives gene clustering in bacterial genomes

scientific article

Persistent biases in the amino acid composition of prokaryotic proteins.

scientific article published in July 2006

Phylogeny of adenylyl cyclases

scientific article published on January 1993

Phylogeny of metabolic pathways: O-acetylserine sulphydrylase A is homologous to the tryptophan synthase beta subunit

scientific article

Pleiotropic expression of catabolic operons in the absence of the cAMP-CAP complex: the case of the maltose regulon

scientific article published on January 1, 1982

Pleiotropic role of quorum-sensing autoinducer 2 in Photorhabdus luminescens

scientific article

Positive regulation of the expression of the Escherichia coli pts operon. Identification of the regulatory regions

scientific article

Positive regulation of the pts operon of Escherichia coli: genetic evidence for a signal transduction mechanism

scientific article

Potent and selective inhibitors of Staphylococcus epidermidis tryptophanyl-tRNA synthetase

scientific article published on 2 July 2007

Problèmes techniques de la résonance magnétique nucléaire des acides nucléiques

scientific article published on 01 January 1975

Protein export in prokaryotes and eukaryotes: indications of a difference in the mechanism of exportation.

scientific article

Proteome analysis of the phenotypic variation process in Photorhabdus luminescens

scientific article published in May 2006

Proteomic identification of a two-component regulatory system in Pseudoalteromonas haloplanktis TAC125.

scientific article published on 22 June 2006

Proteomics of life at low temperatures: trigger factor is the primary chaperone in the Antarctic bacteriumPseudoalteromonas haloplanktisTAC125

scientific article published in 2010

Proton magnetic relaxation studies of manganous complexes of transfer RNA and related compounds

scientific article published on 01 January 1969

Proton magnetic relaxation study of the manganese-transfer-RNA complex.

scientific article

Proton magnetic resonance studies on 5′- AMP site in glycogen phosphorylase b

scientific article published on 01 May 1972

PssA is required for -amylase secretion in Antarctic Pseudoalteromonas haloplanktis

scientific article published on 24 September 2009

Pyrophosphate increases the efficiency of enterobactin-dependent iron uptake in Escherichia coli

scientific article

RcsB plays a central role in H-NS-dependent regulation of motility and acid stress resistance in Escherichia coli

scientific article published on 14 May 2010

Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes

scientific article

Re: request from the International Advisory Committee to DDBJ/EMBL/GenBank

scientific article published in July 2006

Regulation of Escherichia coli adenylate cyclase activity during hexose phosphate transport

scientific article published on 01 March 1996

Regulation of adenylate cyclase synthesis in Escherichia coli: nucleotide sequence of the control region.

scientific article published on January 1983

Regulation of bacterial motility in response to low pH in Escherichia coli: the role of H-NS protein.

scientific article

Regulation of galactose operon expression: glucose effects and role of cyclic adenosine 3',5'-monophosphate

scientific article

Regulation of the Bacillus subtilis ytmI operon, involved in sulfur metabolism

scientific article

Regulation of the early steps of 3-phenylpropionate catabolism in Escherichia coli

scientific article

Regulatory features of tRNA Leu I expression in Escherichia coli K12.

scientific article published on October 1979

Regulatory role of UvrY in adaptation of Photorhabdus luminescens growth inside the insect

scientific article published on 31 January 2008

Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling

scientific article

Reminder to deposit DNA sequences

scientific article published on 11 May 2016

Repulsion and metabolic switches in the collective behavior of bacterial colonies

scientific article published on August 2009

Request from the International Advisory Committee to DDBJ/EMBL/GenBank

scientific article published on 15 May 2006

Restriction map of the cya region of the Escherichia coli K12 chromosome

scientific article published on 01 August 1981

Reversibleinactivation of phenylalanine acceptor activity of yeast tRNAphe by sodium borohydride

scientific article published on 01 May 1970

Revisiting the methionine salvage pathway and its paralogues

article

Rhizobium meliloti adenylate cyclase is related to eucaryotic adenylate and guanylate cyclases.

scientific article

Rhizobium meliloti adenylate cyclase: probing of a NTP-binding site common to cyclases and cation transporters

scientific article published on 01 June 1993

Role of 2-ketobutyrate as an alarmone in E. coli K12: inhibition of adenylate cyclase activity mediated by the phosphoenolpyruvate: glycose phosphotransferase transport system

scientific article published on January 1984

Role of Escherichia coli histone-like nucleoid-structuring protein in bacterial metabolism and stress response--identification of targets by two-dimensional electrophoresis.

scientific article

Role of cyclic AMP in regulatory mechanisms in bacteria

article by Agnes Ullman & Antoine Danchin published April 1980 in Trends in Biochemical Sciences

RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO.

scientific article published on 09 April 2008

S-adenosylmethionine decarboxylase of Bacillus subtilis is closely related to archaebacterial counterparts

scientific article published on 01 June 2000

S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum

scientific article

SARS-CoV-2 variants: relevance for symptom granularity, epidemiology, immunity (herd, vaccines), virus origin and containment?

scientific article published on 04 May 2020

Saurons-nous construire une bactérie synthétique ?

Scaling up synthetic biology: Do not forget the chassis ⬇️

scientific article published on 02 January 2012

Selective stabilisation of developing synapses as a mechanism for the specification of neuronal networks

scientific article published on December 1976

Serine sensitivity of Escherichia coli K 12: partial characterization of a serine resistnat mutant that is extremely sensitive to 2-ketobutyrate

scientific article published in April 1980

Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli

scientific article

Specialized microbial databases for inductive exploration of microbial genome sequences

scientific article

Specific interaction of cobaltic complexes with myosin

scientific article published in October 1974

Specification of the immune response: Its suppression induced by chloramphenicol in vitro

article

Split genes

article

Spx mediates oxidative stress regulation of the methionine sulfoxide reductases operon in Bacillus subtilis

scientific article

Structural and catalytic characteristics of Escherichia coli adenylate kinase.

scientific article

Structural and exchange properties of "Co(III)-phenanthroline-ATP": a labeling reagent for the active site of ATPases

scientific article published on July 1978

Structural and functional relationships between Pasteurella multocida and enterobacterial adenylate cyclases

scientific article

Structural and functional similarities between a ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO)-like protein from Bacillus subtilis and photosynthetic RuBisCO.

scientific article published on 11 March 2009

Structural and physico-chemical characteristics of Bordetella pertussis adenylate kinase, a tryptophan-containing enzyme

scientific article published in December 1993

Structural flexibility of the calmodulin-binding locus in Bordetella pertussis adenylate cyclase. Reconstitution of catalytically active species from fragments or inactive forms of the enzyme

scientific article published on 01 October 1993

Structural homology between virulence-associated bacterial adenylate cyclases

scientific article

Structure and evolution of bacterial adenylate cyclase: comparison between Escherichia coli and Erwinia chrysanthemi.

scientific article

Structure-based discovery of inhibitors of the YycG histidine kinase: new chemical leads to combat Staphylococcus epidermidis infections

scientific article

SubtiList: a relational database for the Bacillus subtilis genome

scientific article published on February 1995

SubtiList: the reference database for the Bacillus subtilis genome

scientific article published on January 2002

Sulfur metabolism in Escherichia coli and related bacteria: facts and fiction.

scientific article

Sulfur-limitation-regulated proteins in Bacillus subtilis: a two-dimensional gel electrophoresis study

scientific article

Sulphur islands in the Escherichia coli genome: markers of the cell's architecture?

scientific article published in June 2000

Synthetic biology's flywheel ⬇️

scientific article published on February 1, 2012

Synthetic biology: discovering new worlds and new words

scientific article published on September 2008

Temporal evolution of master regulator Crp identifies pyrimidines as catabolite modulator factors

scientific article published on 07 October 2021

Testing the hypothesis of a recombinant origin of the SARS-associated coronavirus

scientific article published on 11 October 2004

The Bacillus subtilis genome from gerBC (311 degrees) to licR (334 degrees).

scientific article published in October 1997

The Cellular Chassis as the Basis for New Functionalities: Shortcomings and Requirements

The CymR regulator in complex with the enzyme CysK controls cysteine metabolism in Bacillus subtilis

scientific journal article

The DB case: pattern matching evidence is not significant. MicroCorrespondence

article

The DNA secondary structure of theBacillus subtilisgenome

scientific article published on 01 January 2003

The Delphic boat or what the genomic texts tell us ⬇️

scientific article published on 01 June 1998

The Emergence of the First Cells

The Enigmatic Genome of an Obligate Ancient Spiroplasma Symbiont in a Hadal Holothurian

scientific article published on 20 October 2017

The Escherichia coli DNA-binding protein H-NS is one of the first proteins to be synthesized after a nutritional upshift

article

The European Bacillus subtilis genome sequencing project: current status and accessibility of the data from a new World Wide Web site

scientific article published on November 1996

The H-NS protein is involved in the biogenesis of flagella in Escherichia coli

scientific article

The H-NS protein modulates the activation of the ilvIH operon of Escherichia coli K12 by Lrp, the leucine regulatory protein.

scientific article

The HcaR regulatory protein of Photorhabdus luminescens affects the production of proteins involved in oxidative stress and toxemia

scientific article published on December 2007

The Importance Of Naturally Attenuated Sars-Cov-2 In The Fight Against Covid-19

scientific article published on 28 April 2020

The International Nucleotide Sequence Database Collaboration

scientific article (publication date: 2012)

The PatB protein of Bacillus subtilis is a C-S-lyase.

scientific article

The PhoP-PhoQ two-component regulatory system of Photorhabdus luminescens is essential for virulence in insects

scientific article

The SARS Case Study: An Alarm Clock?

encyclopedia article

The Trw type IV secretion system of Bartonella mediates host-specific adhesion to erythrocytes

scientific article

The absence of the Queuosine tRNA modification leads to pleiotropic phenotypes revealing perturbations of metal and oxidative stress homeostasis in <i>Escherichia coli</i> K12

scientific article published in 2022

The adenylate cyclase catalytic domain of Streptomyces coelicolor is carboxy-terminal

scientific article published in December 1993

The bag or the spindle: the cell factory at the time of systems' biology

scientific article

The calmodulin-sensitive adenylate cyclase of Bordetella pertussis: cloning and expression in Escherichia coli

scientific article published on January 1988

The catalytic domain of Escherichia coli K-12 adenylate cyclase as revealed by deletion analysis of the cya gene

article

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

scientific article

The complete nucleotide sequence of the adenylate cyclase gene of Escherichia coli

scientific article

The cya locus of escherichia coli K12: Organization and gene products

article

The extant core bacterial proteome is an archive of the origin of life

scientific article

The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens

scientific article published on 5 October 2003

The logic of metabolism

The logic of metabolism and its fuzzy consequences

scientific article published on 06 October 2013

The map of the cell is in the chromosome

scientific article published on 01 December 1997

The mechanisms responsible for 2-dimensional pattern formation in bacterial macrofiber populations grown on solid surfaces: fiber joining and the creation of exclusion zones

scientific article

The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination.

scientific article

The metNPQ operon of Bacillus subtilis encodes an ABC permease transporting methionine sulfoxide, D- and L-methionine

scientific article published in March 2004

The methionine salvage pathway in Bacillus subtilis

scientific article

The ptsH, ptsI, and crr genes of the Escherichia coli phosphoenolpyruvate-dependent phosphotransferase system: a complex operon with several modes of transcription.

scientific article

The regulation of Enzyme IIA(Glc) expression controls adenylate cyclase activity in Escherichia coli

scientific article published in May 2002

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

scientific article

The role of H-NS in one carbon metabolism.

scientific article

The role of histidine 63 in the catalytic mechanism of Bordetella pertussis adenylate cyclase

scientific article

The secE gene of Helicobacter pylori

scientific article published on May 2002

The significance of split genes to developmental genetics

scientific article published on January 1987

The specification of the immune response revisited ⬇️

scientific article published on January 1, 1982

The specification of the immune response: A general selective model ⬇️

scientific article published on July 1, 1979

The structural and functional organization of H-NS-like proteins is evolutionarily conserved in gram-negative bacteria

scientific article published in January 1999

The structure of the promoter and amino terminal region of the pH 2.5 acid phosphatase structural gene (appA) of E. coli: a negative control of transcription mediated by cyclic AMP.

scientific article published on March 1987

The ten grand challenges of synthetic life

scientific article

The two authentic methionine aminopeptidase genes are differentially expressed in Bacillus subtilis

scientific article

The urgent need for microbiology literacy in society

scientific article published on 11 April 2019

The viral transmembrane superfamily: possible divergence of Arenavirus and Filovirus glycoproteins from a common RNA virus ancestor

scientific article

Three different systems participate in L-cystine uptake in Bacillus subtilis

scientific article published in August 2004

Toward an understanding of the formylation of initiator tRNA methionine in prokaryotic protein synthesis. I. In vitro studies of the 30S and 70S ribosomal-tRNA complex

scientific article published on 01 April 1976

Toward an understanding of the formylation of initiator tRNA methionine in prokaryotic protein synthesis. II. A two-state model for the 70S ribosome

scientific article published in April 1976

Toward unrestricted use of public genomic data:

scientific article

Transcription - translation coupling and polarity : A possible role of cyclic AMP

scientific article published on 01 January 1981

Transcription regulation coupling of the divergent argG and metY promoters in Escherichia coli K-12.

scientific article

Transcriptional control of polarity in Escherichia coli by cAMP

scientific article published on 01 January 1984

Translation in Bacillus subtilis: roles and trends of initiation and termination, insights from a genome analysis

scientific article

Two functional domains in adenylate cyclase of Escherichia coli

scientific article published on 01 March 1983

Two-component regulatory proteins ResD-ResE are required for transcriptional activation of fnr upon oxygen limitation in Bacillus subtilis

scientific article published on July 1996

UMP kinase from the Gram-positive bacterium Bacillus subtilis is strongly dependent on GTP for optimal activity.

scientific article

Uneven distribution of GATC motifs in the Escherichia coli chromosome, its plasmids and its phages

scientific article

Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing

scientific article

Universal biases in protein composition of model prokaryotes.

scientific article

Universal replication biases in bacteria

article

Unknown unknowns: essential genes in quest for function

scientific article

Use of a riboswitch-controlled conditional hypomorphic mutation to uncover a role for the essential csrA gene in bacterial autoaggregation.

scientific article published on 25 August 2009

Using codon usage to predict genes origin: is the Escherichia coli outer membrane a patchwork of products from different genomes?

scientific article published in August 1997

Vectors for high conditional expression of cloned genes

article

Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes

scientific article published on 31 January 2007

Was photosynthetic RuBisCO recruited by acquisitive evolution from RuBisCO-like proteins involved in sulfur metabolism?

scientific article

Why Nature Chose Potassium

scientific article published on 28 October 2019

Why sequence genomes? The Escherichia coli imbroglio

scientific article published in October 1995

Yeast adenylate cyclase catalytic domain is carboxy terminal

scientific article published in January 1986

YtqI from Bacillus subtilis has both oligoribonuclease and pAp-phosphatase activity

scientific article published on 22 June 2007

Zinc, an unexpected integrator of metabolism?

scientific article published on 09 March 2020

[A biochemical mechanism for the epigenesis of the neuromuscular junction]

scientific article published on 01 February 1981

[An immunoenzyme technic for demonstrating the molecular hybridization of nucleic acids]

scientific article published on 01 November 1983

[Labelling of nucleic acids by non exchangeable ions]

scientific article published on 01 November 1971

[The origin of life revisited: from metabolites to cells]

scientific article published on 01 November 2018

mRNA turnover and DNA synthesis: a lesson from bacterial genome comparisons

scientific article published on 01 May 1996

tRNA structure and binding sites for cations ⬇️

scientific article published on January 1, 1972

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