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List of works by Matthew K. Fujita

A Tale of Two Skates: Comparative Phylogeography of North American Skate Species with Implications for Conservation

scientific article published on 23 May 2019

A coalescent perspective on delimiting and naming species: a reply to Bauer et al.

scientific article

Bayesian inference of species diffusion in the West African Agama agama species group (Reptilia, Agamidae)

scientific article

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)

scientific article published on 2 June 2010

Coalescent-based species delimitation in an integrative taxonomy

scientific article

Comparative phylogeography of West African amphibians and reptiles

scientific article published on 18 February 2020

Correction to: Eye‐body allometry across biphasic ontogeny in anuran amphibians

scientific article published in 2021

Delimitation despite discordance: Evaluating the species limits of a confounding species complex in the face of mitonuclear discordance

scientific article published on 11 August 2021

Description of four new West African forest geckos of the Hemidactylus fasciatus Gray, 1842 complex, revealed by coalescent species delimitation ⬇️

scientific article published in 2014

Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs

scientific article published on 19 June 2014

Diversification and persistence at the arid-monsoonal interface: australia-wide biogeography of the Bynoe's gecko (Heteronotia binoei; Gekkonidae).

scientific article

Ecology drives patterns of spectral transmission in the ocular lenses of frogs and salamanders

scientific article published in 2022

Evaluating mechanisms of diversification in a Guineo-Congolian tropical forest frog using demographic model selection.

scientific article

Evolutionary Dynamics and Consequences of Parthenogenesis in Vertebrates ⬇️

scientific article published on 2 November 2020

Eye size and investment in frogs and toads correlate with adult habitat, activity pattern and breeding ecology

scientific article published on 23 September 2020

Eye‐body allometry across biphasic ontogeny in anuran amphibians

scientific article published on 11 February 2021

Finding complexity in complexes: assessing the causes of mitonuclear discordance in a problematic species complex of Mesoamerican toads

scientific article published on 04 June 2020

Genetic divergence and diversity in the Mona and Virgin Islands Boas, Chilabothrus monensis (Epicrates monensis) (Serpentes: Boidae), West Indian snakes of special conservation concern

scientific article published on 30 March 2015

Genome evolution in Reptilia, the sister group of mammals

scientific article published on January 2010

Geographical features are the predominant driver of molecular diversification in widely distributed North American Whipsnakes

scientific article

Giant Tree Frog diversification in West and Central Africa: Isolation by physical barriers, climate, and reproductive traits

scientific article published in 2021

High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps

scientific article published on 28 September 2015

Impacts of the Toba eruption and montane forest expansion on diversification in Sumatran parachuting frogs (Rhacophorus)

scientific article published on 07 July 2020

Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes

scientific article

Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence

scientific article (publication date: 12 February 2013)

Introgression and phenotypic assimilation in Zimmerius flycatchers (Tyrannidae): population genetic and phylogenetic inferences from genome-wide SNPs

scientific article

Limitations of climatic data for inferring species boundaries: insights from speckled rattlesnakes

scientific article (publication date: 2015)

Lost Sex in the Reptiles: Constraints and Correlations

Molecular systematics of Stenodactylus (Gekkonidae), an Afro-Arabian gecko species complex ⬇️

scientific article published on October 28, 2010

Multiple origins and rapid evolution of duplicated mitochondrial genes in parthenogenetic geckos (Heteronotia binoei; Squamata, Gekkonidae).

scientific article published on 5 October 2007

Ocular lens morphology is influenced by ecology and metamorphosis in frogs and toads

scientific article published in 2022

Palaeoclimate change drove diversification among isolated mountain refugia in the Australian arid zone

scientific article

Phylogenomic Assessment of Biodiversity Using a Reference-Based Taxonomy: An Example With Horned Lizards (Phrynosoma)

scientific article published in 2021

Phylogeography of montane dragons could shed light on the history of forests and diversification processes on Sumatra

scientific article published on 16 April 2020

Report from the first snake genomics and integrative biology meeting

scientific article published on 24 September 2012

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

scientific article

Sky, sea, and forest islands: Diversification in the African leaf-folding frog Afrixalus paradorsalis (Anura: Hyperoliidae) of the Lower Guineo-Congolian rain forest

scholarly article by Kristin L. Charles et al published 25 June 2018 in Journal of Biogeography

Speciation on the rocks: integrated systematics of the Heteronotia spelea species complex (Gekkota; Reptilia) from Western and Central Australia.

scientific article

Species delimitation using genome-wide SNP data

scientific article

Synchronous diversification of parachuting frogs (Genus Rhacophorus) on Sumatra and Java

scientific article published on 26 February 2018

The Anolis lizard genome: an amniote genome without isochores

scientific article

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

scientific article

The first mitochondrial genome of a South America parthenogenetic lizard (Squamata: Gymnophthalmidae)

scientific article published in 2021

The genetic legacy of aridification: climate cycling fostered lizard diversification in Australian montane refugia and left low-lying deserts genetically depauperate

scientific article published on 18 August 2011

The genome of the green anole lizard and a comparative analysis with birds and mammals ⬇️

scientific article

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

scientific article

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

scientific article

Transcriptome sequencing reveals signatures of positive selection in the Spot-Tailed Earless Lizard

scientific article published on 15 June 2020

Transcriptomic evidence for visual adaptation during the aquatic to terrestrial metamorphosis in leopard frogs

scientific article published in 2022

Turtle phylogeny: insights from a novel nuclear intron

scientific article

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

scientific article

Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies

scientific article

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