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List of works by Penny Nymark

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Integrative analysis of microRNA, mRNA and aCGH data reveals asbestos- and histology-related changes in lung cancer

scientific article (publication date: 11 May 2011)
CDK4is a probable target gene in a novel amplicon at 12q13.3-q14.1 in lung cancer

scientific article (publication date: 12 November 2004)
Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines

scientific article published in March 2007
Genotoxicity of polyvinylpyrrolidone-coated silver nanoparticles in BEAS 2B cells

scientific article
A data fusion pipeline for generating and enriching Adverse Outcome Pathway descriptions

scientific article published on 15 November 2017
NanoSolveIT Project: Driving nanoinformatics research to develop innovative and integrated tools for in silico nanosafety assessment

scientific article published on 07 March 2020
Identification of specific gene copy number changes in asbestos-related lung cancer

scientific article published on 01 June 2006
Gene expression and copy number profiling suggests the importance of allelic imbalance in 19p in asbestos-associated lung cancer

scientific article published on 12 February 2007
Molecular and genetic changes in asbestos-related lung cancer

scientific article published on 24 March 2008
Toward the Replacement of Animal Experiments through the Bioinformatics-driven Analysis of 'Omics' Data from Human Cell Cultures

scientific article from 2015
Free radical scavenging and formation by multi-walled carbon nanotubes in cell free conditions and in human bronchial epithelial cells

scientific article
In vitro and in vivo genotoxic effects of straight versus tangled multi-walled carbon nanotubes

scientific article published on 16 December 2015
Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials

scientific article published on 21 December 2018
Molecular alterations at 9q33.1 and polyploidy in asbestos-related lung cancer

scientific article published on 01 January 2009
Extensive temporal transcriptome and microRNA analyses identify molecular mechanisms underlying mitochondrial dysfunction induced by multi-walled carbon nanotubes in human lung cells.

scientific article
Accumulation of genomic alterations in 2p16, 9q33.1 and 19p13 in lung tumours of asbestos-exposed patients

scientific article published on 7 August 2012
Aberrations of chromosome 19 in asbestos-associated lung cancer and in asbestos-induced micronuclei of bronchial epithelial cells in vitro

scientific article published on 13 March 2008
Toward Rigorous Materials Production: New Approach Methodologies Have Extensive Potential to Improve Current Safety Assessment Practices

scientific article published on 08 January 2020
Adverse outcome pathways as a tool for the design of testing strategies to support the safety assessment of emerging advanced materials at the nanoscale

scientific article published on 25 May 2020
Towards FAIR nanosafety data

Insights into possibilities for grouping and read-across for nanomaterials in EU chemicals legislation

scientific article published on 05 September 2018
Enriching Nanomaterials Omics Data: An Integration Technique to Generate Biological Descriptors

scientific article published on 12 October 2017
Chapter 11. Computational Modelling of Biological Responses to Engineered Nanomaterials

Toxic and Genomic Influences of Inhaled Nanomaterials as a Basis for Predicting Adverse Outcome.

scientific article published in April 2018
Transcriptomics in Toxicogenomics, Part II: Preprocessing and Differential Expression Analysis for High Quality Data

scientific article published on 08 May 2020
FAIR assessment tools: evaluating use and performance

scientific article published in July 2022
ELIXIR and Toxicology: a community in development

scientific article published on 3 October 2023
Reliable Surface Analysis Data of Nanomaterials in Support of Risk Assessment Based on Minimum Information Requirements

toxFlow: a Web-Based Application for Read-Across Toxicity Prediction using Omics and Physicochemical Data.

scientific article published on 27 December 2017
The FAIR AOP roadmap for 2025: Advancing findability, accessibility, interoperability, and re-usability of adverse outcome pathways

scientific article published in September 2025
A Community-Driven, Openly Accessible Molecular Pathway Integrating Knowledge on Malignant Pleural Mesothelioma

scientific article published on 26 April 2022
A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials

scientific article published on 16 May 2024
European Registry of Materials: global, unique identifiers for (undisclosed) nanomaterials

scientific article from 2022
eNanoMapper – A database and ontology framework for design and safety assessment of nanomaterials

Introducing WikiPathways to link molecular pathways to adverse outcome pathways to support regulatory risk assessment

scientific article
Nanomaterial grouping: Existing approaches and future recommendations

scholarly article
Transcriptomics in Toxicogenomics, Part I: Experimental Design, Technologies, Publicly Available Data, and Regulatory Aspects

scientific article published on 15 April 2020
Safe innovation approach: Towards an agile system for dealing with innovations

scholarly article
Why adverse outcome pathways need to be FAIR

scientific article published in January 2024
Transcriptomics in Toxicogenomics, Part III: Data Modelling for Risk Assessment

scientific article published on 08 April 2020
High-throughput screening data generation, scoring and FAIRification: a case study on nanomaterials

ELIXIR and Toxicology: a community in development

INTOXICOM Workshop Report: FAIRification of Toxicological Research Output: Leveraging ELIXIR Resources

Methods, models, mechanisms and metadata: Introducing the Nanotoxicology collection at F1000Research

scientific article published in 2021
COVID-19 through Adverse Outcome Pathways: Building networks to better understand the disease – 3rd CIAO AOP Design Workshop

scientific article published in January 2022

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