List of works - Ryuichiro Ishitani

Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme ⬇️

scientific article (publication date: 2 May 2003)

An enzyme with a deep trefoil knot for the active-site architecture

scientific article

Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase

scientific article

C-terminal domain of archaeal O -phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA Sec ⬇️

scientific article published on September 24, 2010

Conformational transition of Sec machinery inferred from bacterial SecYE structures

scientific article

Crystal Structure and Activity of the Endoribonuclease Domain of the piRNA Pathway Factor Maelstrom

scientific article

Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA

scientific article

Crystal Structure of Silkworm PIWI-Clade Argonaute Siwi Bound to piRNA

scientific article

Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm

scientific article

Crystal structure of Enpp1, an extracellular glycoprotein involved in bone mineralization and insulin signaling

scientific article

Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases

scientific article

Crystal structure of a claudin provides insight into the architecture of tight junctions

scientific article

Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification ⬇️

scientific article published on October 23, 2010

Crystal structure of archaeosine tRNA-guanine transglycosylase

scientific article

Crystal structure of autotaxin and insight into GPCR activation by lipid mediators

scientific article

Crystal structure of the MgtE Mg2+ transporter

scientific article

Crystal structure of the Sec4p⋅Sec2p complex in the nucleotide exchanging intermediate state

scientific article

Crystal structure of the channelrhodopsin light-gated cation channel

scientific article

Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains

scientific article

Crystal structure of the cytosolic domain of the cation diffusion facilitator family protein

scientific article

Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form

scientific article

Crystal structure of the radical SAM enzyme catalyzing tricyclic modified base formation in tRNA

scientific article

Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine

scientific article

Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure

scientific article

Expanding Role of the Jumonji C Domain as an RNA Hydroxylase ⬇️

scientific article published on August 25, 2010

Functional convergence of two lysyl-tRNA synthetases with unrelated topologies

scientific article

Mg2+-dependent gating of bacterial MgtE channel underlies Mg2+ homeostasis

scientific article

Mg2+-sensing mechanism of Mg2+ transporter MgtE probed by molecular dynamics study

scientific article

Omnipotent role of archaeal elongation factor 1 alpha (EF1α) in translational elongation and termination, and quality control of protein synthesis ⬇️

scientific article published on October 25, 2010

Outward- and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin

scientific article

Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality

scientific article

Screening and X-ray crystal structure-based optimization of autotaxin (ENPP2) inhibitors, using a newly developed fluorescence probe

scientific article

Simplification of the genetic code: restricted diversity of genetically encoded amino acids

scientific article

Structural Basis for the Altered PAM Specificities of Engineered CRISPR-Cas9

scientific article

Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase

scientific article

Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels

scientific article

Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS

scientific article

Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump

scientific article

Structural basis for amino acid export by DMT superfamily transporter YddG

scientific article

Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK

scientific article

Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex

scientific article

Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog

scientific article

Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion

scientific article (publication date: June 2003)

Structural basis for potent inhibition of SIRT2 deacetylase by a macrocyclic peptide inducing dynamic structural change

scientific article

Structural basis for specific inhibition of Autotaxin by a DNA aptamer

scientific article

Structural basis for the counter-transport mechanism of a H+/Ca2+ exchanger

scientific article

Structural basis for the drug extrusion mechanism by a MATE multidrug transporter

scientific article

Structural basis for translation termination by archaeal RF1 and GTP-bound EF1 complex

scientific article

Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase

scientific article

Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2

scientific article

Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter

scientific article

Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4

scientific article

Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation

scientific article

Structure and function of Zucchini endoribonuclease in piRNA biogenesis

scientific article

Structure and function of a membrane component SecDF that enhances protein export

scientific article

Structure of a dominant-negative helix-loop-helix transcriptional regulator suggests mechanisms of autoinhibition

scientific article

Structure of a tRNA-dependent kinase essential for selenocysteine decoding

scientific article

Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNAGln formation

scientific article

Structure ofSaccharomyces cerevisiaemitochondrial Qri7 in complex with AMP

scientific article

List of works by Ryuichiro Ishitani

Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme ⬇️

An enzyme with a deep trefoil knot for the active-site architecture

Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase

C-terminal domain of archaeal O -phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA Sec ⬇️

Conformational transition of Sec machinery inferred from bacterial SecYE structures

Crystal Structure and Activity of the Endoribonuclease Domain of the piRNA Pathway Factor Maelstrom

Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA

Crystal Structure of Silkworm PIWI-Clade Argonaute Siwi Bound to piRNA

Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm

Crystal structure of Enpp1, an extracellular glycoprotein involved in bone mineralization and insulin signaling

Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases

Crystal structure of a claudin provides insight into the architecture of tight junctions

Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification ⬇️

Crystal structure of archaeosine tRNA-guanine transglycosylase

Crystal structure of autotaxin and insight into GPCR activation by lipid mediators

Crystal structure of the MgtE Mg2+ transporter

Crystal structure of the Sec4p⋅Sec2p complex in the nucleotide exchanging intermediate state

Crystal structure of the channelrhodopsin light-gated cation channel

Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains

Crystal structure of the cytosolic domain of the cation diffusion facilitator family protein

Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form

Crystal structure of the radical SAM enzyme catalyzing tricyclic modified base formation in tRNA

Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine

Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure

Expanding Role of the Jumonji C Domain as an RNA Hydroxylase ⬇️

Functional convergence of two lysyl-tRNA synthetases with unrelated topologies

Mg2+-dependent gating of bacterial MgtE channel underlies Mg2+ homeostasis

Mg2+-sensing mechanism of Mg2+ transporter MgtE probed by molecular dynamics study

Omnipotent role of archaeal elongation factor 1 alpha (EF1α) in translational elongation and termination, and quality control of protein synthesis ⬇️

Outward- and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin

Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality

Screening and X-ray crystal structure-based optimization of autotaxin (ENPP2) inhibitors, using a newly developed fluorescence probe

Simplification of the genetic code: restricted diversity of genetically encoded amino acids

Structural Basis for the Altered PAM Specificities of Engineered CRISPR-Cas9

Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase

Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels

Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS

Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump

Structural basis for amino acid export by DMT superfamily transporter YddG

Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK

Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex

Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog

Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion

Structural basis for potent inhibition of SIRT2 deacetylase by a macrocyclic peptide inducing dynamic structural change

Structural basis for specific inhibition of Autotaxin by a DNA aptamer

Structural basis for the counter-transport mechanism of a H+/Ca2+ exchanger

Structural basis for the drug extrusion mechanism by a MATE multidrug transporter

Structural basis for translation termination by archaeal RF1 and GTP-bound EF1 complex

Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase

Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2

Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter

Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4

Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation

Structure and function of Zucchini endoribonuclease in piRNA biogenesis

Structure and function of a membrane component SecDF that enhances protein export

Structure of a dominant-negative helix-loop-helix transcriptional regulator suggests mechanisms of autoinhibition

Structure of a tRNA-dependent kinase essential for selenocysteine decoding

Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNAGln formation

Structure ofSaccharomyces cerevisiaemitochondrial Qri7 in complex with AMP