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List of works by Peter Simmonds

2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

scientific article published on 04 September 2020

50 years of the International Committee on Taxonomy of Viruses: progress and prospects.

scientific article

A CCR5-dependent novel mechanism for type 1 HIV gp120 induced loss of macrophage cell surface CD4.

scientific article published on April 2001

A European multicentre evaluation of detection and typing methods for human enteroviruses and parechoviruses using RNA transcripts

scientific article published on 28 December 2019

A Hepatitis C Virus cis-Acting Replication Element Forms a Long-Range RNA-RNA Interaction with Upstream RNA Sequences in NS5B

scientific article (publication date: September 2008)

A Novel Diagnostic Target in the Hepatitis C Virus Genome

scientific article (publication date: 10 February 2009)

A clash of ideas - the varying uses of the 'species' term in virology and their utility for classifying viruses in metagenomic datasets.

scientific article published on 6 February 2018

A comparison of polymerase chain reaction and an infectivity assay for human immunodeficiency virus type 1 titration during virus inactivation of blood components.

scientific article published in October 1993

A comprehensive system for consistent numbering of HCV sequences, proteins and epitopes

scientific article published in November 2006

A highly divergent picornavirus in a marine mammal

scientific article

A highly prevalent and genetically diversified Picornaviridae genus in South Asian children

scientific article

A new arenavirus in transplantation

scientific article published on 01 June 2008

A newly identified bocavirus species in human stool

scientific article

A proposed division of the family Picornaviridae into subfamilies based on phylogenetic relationships and functional genomic organization

scientific article published on 04 August 2021

A set of reference sequences for the hepatitis C genotypes 4d, 4f, and 4k covering the full open reading frame

scientific article

A short bifunctional element operates to positively or negatively regulate ESAG9 expression in different developmental forms of Trypanosoma brucei

scientific article published on 22 March 2013

A study of four-year HCFC-22 and HCFC-142b in-situ measurements at the Shangdianzi regional background station in China

article

A third genotype of the human parvovirus PARV4 in sub-Saharan Africa.

scientific article published on September 2008

A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication. ⬇️

scientific article published on 4 May 2012

Absence of detectable replication of human bocavirus species 2 in respiratory tract.

scientific article

Absence of hepatitis A virus transmission by high-purity solvent detergent treated coagulation factor concentrates in Scottish haemophiliacs.

scientific article

Absence of hepatitis C virus transmission but frequent transmission of HIV-1 from sexual contact with doubly-infected individuals ⬇️

scientific article published on September 1, 1997

Accelerated Tau deposition in the brains of individuals infected with human immunodeficiency virus-1 before and after the advent of highly active anti-retroviral therapy.

scientific article published on 9 May 2006

Activated Peripheral CD8 Lymphocytes Express CD4 In Vivo and Are Targets for Infection by Human Immunodeficiency Virus Type 1 ⬇️

scientific article published on December 1, 2001

Acute hepatitis C infection after sexual exposure.

scientific article

Acute viral hepatitis - should the current screening strategy be modified?

scientific article published on 13 January 2014

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

scientific article published on 01 March 2019

Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations.

scientific article published in November 2004

An immune control model for viral replication in the CNS during presymptomatic HIV infection.

scientific article

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages

scientific article published on 01 January 2020

Analysis of a new hepatitis C virus type and its phylogenetic relationship to existing variants

scientific article published on May 1992

Analysis of genetic diversity and sites of recombination in human rhinovirus species C

scientific article

Analysis of the entire genomes of torque teno midi virus variants in chimpanzees: infrequent cross-species infection between humans and chimpanzees.

scientific article published in February 2009

Antibacterial prophylaxis after chemotherapy for solid tumors and lymphomas

scientific article

Association between chronic hepatitis C infection and hepatocellular carcinoma in a Scottish population

scientific article

Atmospheric histories and emissions of chlorofluorocarbons CFC-13 (CClF3), ΣCFC-114 (C2Cl2F4), and CFC-115 (C2ClF5)

article published in 2017

Atmospheric histories and emissions of chlorofluorocarbons CFC-13 (CClF3), ΣCFC-114 (C2Cl2F4), and CFC-115 (C2ClF5)

scholarly article

Atmospheric histories and global emissions of halons H-1211 (CBrClF2), H-1301 (CBrF3), and H-2402 (CBrF2CBrF2)

Atmospheric histories and global emissions of the anthropogenic hydrofluorocarbons HFC-365mfc, HFC-245fa, HFC-227ea, and HFC-236fa

scientific article

Attenuation of dengue (and other RNA viruses) with codon pair recoding can be explained by increased CpG/UpA dinucleotide frequencies

scientific article published on 12 June 2015

Atypical hand, foot, and mouth disease associated with coxsackievirus A6 infection, Edinburgh, United Kingdom, January to February 2014.

scientific article published on 27 March 2014

Autochthonous hepatitis E in Scotland

scientific article published on 14 October 2013

Binomial nomenclature for virus species: a consultation

scientific article published on 01 February 2020

Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses

scientific article

Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses

scientific article

Bones hold the key to DNA virus history and epidemiology

scientific article

Brain viral burden, neuroinflammation and neurodegeneration in HAART-treated HIV positive injecting drug users

scientific article published on 14 January 2014

Broad and strong memory CD4+ and CD8+ T cells induced by SARS-CoV-2 in UK convalescent individuals following COVID-19

scientific article published on 04 September 2020

Burden of influenza B virus infections in Scotland in 2012/13 and epidemiological investigations between 2000 and 2012.

scientific article published on 18 September 2014

Cerebral infarction in adult AIDS patients: observations from the Edinburgh HIV Autopsy Cohort.

scientific article

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).

scientific article published on 22 April 2017

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

scientific article

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)

scientific article published on 01 September 2019

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

scientific article published on 20 August 2020

Changing epidemiology of human parvovirus 4 infection in sub-Saharan Africa.

scientific article published on October 2010

Characteristics of nucleotide substitution in the hepatitis C virus genome: constraints on sequence change in coding regions at both ends of the genome.

scientific article published on September 1997

Characterization of Posa and Posa-like virus genomes in fecal samples from humans, pigs, rats, and bats collected from a single location in Vietnam

scientific article published on July 2017

Characterization of a canine homolog of hepatitis C virus

scientific article

Characterization of a canine homolog of human Aichivirus

scientific article

Characterization of novel canine bocaviruses and their association with respiratory disease

scientific article

Characterization of the Specificity, Functionality, and Durability of Host T-Cell Responses Against the Full-Length Hepatitis E Virus

scientific article published on 15 September 2016

Circulation of non-polio enteroviruses in 24 EU and EEA countries between 2015 and 2017: a retrospective surveillance study

scientific article published on 20 December 2019

Classification and Genomic Diversity of Enterically Transmitted Hepatitis Viruses.

scientific article

Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region

scientific article (publication date: November 1993)

Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: proposals for standardization. International Committee on Virus Taxonomy

scientific article (publication date: 1998)

Clinical perspectives of emerging pathogens in bleeding disorders.

scientific article

Clinical significance of intrahepatic hepatitis C virus levels in patients with chronic HCV infection

scientific article

Co-circulation of enteroviruses between apes and humans

scientific article

Comparing parasitological vs serological determination of Schistosoma haematobium infection prevalence in preschool and primary school-aged children: implications for control programmes

scientific article

Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.

scientific article published on 06 July 2016

Comparison of diagnostic clinical samples and environmental sampling for enterovirus and parechovirus surveillance in Scotland, 2010 to 2012.

scientific article published on 17 April 2014

Comparison of hepatitis B virus subtyping of d/y determinants by radioimmunoprecipitation assay and the polymerase chain reaction

scientific article published on January 1, 1992

Comparison of human parechovirus and enterovirus detection frequencies in cerebrospinal fluid samples collected over a 5-year period in edinburgh: HPeV type 3 identified as the most common picornavirus type.

scientific article

Comparison of tissue distribution, persistence, and molecular epidemiology of parvovirus B19 and novel human parvoviruses PARV4 and human bocavirus.

scientific article published on 21 March 2007

Complete nucleotide sequence of a type 4 hepatitis C virus variant, the predominant genotype in the Middle East.

scientific article published on June 1997

Comprehensive full-length sequence analyses of human parechoviruses: diversity and recombination.

scientific article

Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes

scientific article (publication date: October 2005)

Consensus statement: Virus taxonomy in the age of metagenomics

scientific article

Convalescent plasma donors show enhanced cross‐reactive neutralizing antibody response to antigenic variants of SARS‐CoV‐2 following immunization

scientific article published in 2022

Convalescent plasma therapy for the treatment of patients with COVID-19: Assessment of methods available for antibody detection and their correlation with neutralising antibody levels

scientific article published on 17 December 2020

Convalescent plasma treatment for SARS-CoV-2 infection: analysis of the first 436 donors in England, 22 April to 12 May 2020

scientific article published on 01 July 2020

Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient

scientific article published on June 1992

Correction to: Binomial nomenclature for virus species: a consultation

scientific article published on 17 February 2020

Correction to: Recommendations for the nomenclature of enteroviruses and rhinoviruses

scientific article published on 23 March 2020

CpG and UpA dinucleotides in both coding and non-coding regions of echovirus 7 inhibit replication initiation post-entry

scientific article published on 29 September 2017

Detailed mapping of RNA secondary structures in core and NS5B-encoding region sequences of hepatitis C virus by RNase cleavage and novel bioinformatic prediction methods.

scientific article

Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam.

scientific article published on 28 February 2018

Detection and genetic characterization of enteroviruses circulating among wild populations of chimpanzees in Cameroon: relationship with human and simian enteroviruses

scientific article

Detection in chimpanzees of a novel flavivirus related to GB virus-C/hepatitis G virus ⬇️

scientific article published on August 1, 1998

Detection of a novel DNA virus (TTV) in blood donors and blood products.

scientific article published in July 1998

Detection of enterovirus viraemia in blood donors.

scientific article published on May 2001

Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence

scientific article

Detection of hepatitis B virus infection in wild-born chimpanzees (Pan troglodytes verus): phylogenetic relationships with human and other primate genotypes

scientific article

Detection of influenza C virus but not influenza D virus in Scottish respiratory samples

scientific article

Detection of neutralising antibodies to SARS-CoV-2 to determine population exposure in Scottish blood donors between March and May 2020

scientific article published on 01 October 2020

Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam.

scientific article published on 18 April 2017

Detection of three types of hepatitis C virus in blood donors: investigation of type‐specific differences in serologic reactivity and rate of alanine aminotransferase abnormalities ⬇️

scientific article published on January 1, 1993

Detection of zoonotic pathogens and characterization of novel viruses carried by commensal Rattus norvegicus in New York City

scientific article

Determinants of HIV disease progression: six-year longitudinal study in the Edinburgh haemophilia/HIV cohort ⬇️

scientific article published on November 9, 1991

Determination and analysis of complete coding sequence regions of new discovered human bocavirus types 2 and 3 ⬇️

scientific article published on August 5, 2010

Determination of HCV Genotypes by RFLP

scientific article published on 01 January 1999

Development and assay of RNA transcripts of enterovirus species A to D, rhinovirus species a to C, and human parechovirus: assessment of assay sensitivity and specificity of real-time screening and typing methods

scientific article published on 27 June 2012

Development of an intergenotypic hepatitis C virus (HCV) cell culture method to assess antiviral susceptibilities and resistance development of HCV NS3 protease genes from HCV genotypes 1 to 6

scientific article

Development of multiplexed nucleic acid testing for human immunodeficiency virus type 1 and hepatitis C virus.

scientific article published in January 2001

Direct identification of human enterovirus serotypes in cerebrospinal fluid by amplification and sequencing of the VP1 region.

scientific article published on 8 January 2009

Discovery and characterization of mammalian endogenous parvoviruses

scientific article (publication date: December 2010)

Discrimination of hepatitis G virus/GBV-C geographical variants by analysis of the 5' non-coding region.

scientific article published on July 1997

Disease burden of the most commonly detected respiratory viruses in hospitalized patients calculated using the disability adjusted life year (DALY) model

article

Distinct systemic and central nervous system disease patterns in enterovirus and parechovirus infected children

scientific article published on 22 March 2014

Distribution of TT virus (TTV), TTV-like minivirus, and related viruses in humans and nonhuman primates.

scientific article published in February 2003

Diversity of murine norovirus in wild-rodent populations: species-specific associations suggest an ancient divergence

scientific article published on 9 November 2011

Does drug abuse alter microglial phenotype and cell turnover in the context of advancing HIV infection?

scientific article published on June 2005

Early acquisition of TT virus (TTV) in an area endemic for TTV infection.

scientific article published in May 1999

Elevation of CpG frequencies in influenza A genome attenuates pathogenicity but enhances host response to infection

scientific article published on 16 February 2016

Emissions of Carbon Tetrachloride (CCl 4 ) from Europe

Emissions of carbon tetrachloride from Europe

scholarly article

Enhancement of immunohistochemical detection of HIV-1 p24 antigen in brain by tyramide signal amplification.

scientific article published in August 1997

Enhancement of the Replication of Hepatitis C Virus Replicons of Genotypes 1 to 4 by Manipulation of CpG and UpA Dinucleotide Frequencies and Use of Cell Lines Expressing SECL14L2 for Antiviral Resistance Testing.

scientific article published on 07 March 2016

Epidemiological profile and clinical associations of human bocavirus and other human parvoviruses.

scientific article

Epidemiology and clinical associations of human parechovirus respiratory infections.

scientific article

Epidemiology and clinical characteristics of parainfluenza virus 3 outbreak in a Haemato-oncology unit

scientific article published on 27 April 2012

Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.

scientific article

Erratum to “Direct identification of human enterovirus serotypes in cerebrospinal fluid by amplification and sequencing of the VP1 region” [J. Clin. Virol. 44 (2009) 119–124]

scholarly article published in Journal of Clinical Virology

European Emissions of HFC-365mfc, a Chlorine-Free Substitute for the Foam Blowing Agents HCFC-141b and CFC-11

scientific article published on 01 February 2007

Evaluating the evidence for virus/host co-evolution ⬇️

scientific article published on November 9, 2011

Evaluation of Viremia Frequencies of a Novel Human Pegivirus by Using Bioinformatic Screening and PCR

scientific article

Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy

scientific article published on 17 July 2018

Evidence against GB virus C infection in dromedary camels

scientific article published on 30 June 2011

Evolution and phylogeographic dissemination of endemic porcine picornaviruses in Vietnam

scientific article

Evolution of CD8+ T cell responses after acute PARV4 infection

scientific article published on 2 January 2013

Evolution of the hepatitis E virus hypervariable region.

scientific article published on 25 July 2012

Evolutionarily conserved RNA secondary structures in coding and non-coding sequences at the 3' end of the hepatitis G virus/GB-virus C genome.

scientific article published in April 2001

Evolutionary analysis of variants of hepatitis C virus found in South-East Asia: comparison with classifications based upon sequence similarity.

scientific article published on December 1996

Evolutionary dynamics and temporal/geographical correlates of recombination in the human enterovirus echovirus types 9, 11, and 30

scientific article

Evolutionary origins of epidemic potential among human RNA viruses

scientific article published on 18 September 2019

Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: updated criteria and genotype assignment web resource

scientific article

Exploration of acetanilide derivatives of 1-(ω-phenoxyalkyl)uracils as novel inhibitors of Hepatitis C Virus replication

scientific article

Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses

scientific article published in 2022

First evidence of HIV infection of CD8 lymphocytes expressing CD4 during primary HIV-1 infection

scientific article published on 01 July 2005

First next-generation sequencing full-genome characterization of a hepatitis C virus genotype 7 divergent subtype.

scientific article published on 8 August 2016

Frequency, viral loads, and serotype identification of enterovirus infections in Scottish blood donors.

scientific article published on August 2003

Frequent reinfection and reactivation of hepatitis C virus genotypes in multitransfused hemophiliacs.

scientific article published in October 1994

Functional Analysis of RNA Structures Present at the 3? Extremity of the Murine Norovirus Genome: the Variable Polypyrimidine Tract Plays a Role in Viral Virulence.

scientific article published in October 2010

Functional analysis of RNA structures present at the 3' extremity of the murine norovirus genome: the variable polypyrimidine tract plays a role in viral virulence

scientific article

Fundamental principles of epidemic spread highlight the immediate need for large-scale serological surveys to assess the stage of the SARS-CoV-2 epidemic

scientific article (preprint)

Genetic characterization of human coxsackievirus A6 variants associated with atypical hand, foot and mouth disease: a potential role of recombination in emergence and pathogenicity.

scientific article published on 22 January 2015

Genetic diversity and cross-species transmission of kobuviruses in Vietnam.

scientific article published in January 2018

Genetic diversity and evolution of hepatitis C virus--15 years on

scientific article (publication date: November 2004)

Genetic variability and the classification of hepatitis E virus

scientific article published on 6 February 2013

Genetics, recombination and clinical features of human rhinovirus species C (HRV-C) infections; interactions of HRV-C with other respiratory viruses

scientific article

Genome analysis of a novel, highly divergent picornavirus from common kestrel (Falco tinnunculus): the first non-enteroviral picornavirus with type-I-like IRES.

scientific article published on 9 April 2015

Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus.

scientific article published on 10 April 2017

Genomic analysis of a novel picornavirus from a migratory waterfowl, greater white-fronted goose (Anser albifrons).

scientific article

Genotype differences in susceptibility and resistance development of hepatitis C virus to protease inhibitors telaprevir (VX-950) and danoprevir (ITMN-191) ⬇️

scientific article published on April 1, 2011

Genotype, viral load and age as independent predictors of treatment outcome of interferon-alpha 2a treatment in patients with chronic hepatitis C. Construct group.

scientific article published on January 1997

Geographic and species association of hepatitis B virus genotypes in non-human primates.

scientific article published in September 2003

Guidance for creating individual and batch latinized binomial virus species names

scientific article published in 2022

HFC-43-10mee atmospheric abundances and global emission estimates

article

HGV/GB virus C transmission by blood components in patients undergoing open‐heart surgery ⬇️

scientific article published on November 1, 2003

HIV clearance in an infant?

scientific article published in Nature

HIV-1 tropism and co-receptor use

scientific article published in Nature

HIV-1-infected CD8+CD4+ T cells decay in vivo at a similar rate to infected CD4 T cells during HAART.

scientific article published in January 2008

Hepatitis B serology and DNA detection in multitransfused haemophiliacs and factor VIII and IX concentrates

scientific article published in October 1996

Hepatitis C infection from anti-D immunoglobulin ⬇️

scientific article published on 01 August 1995

Hepatitis C serotype and response to interferon therapy.

scientific article published in January 1994

Hepatitis C viraemia in United Kingdom blood donors. A multicentre study

scientific article published on January 1, 1992

Hepatitis C virus (HCV) genotypes and chronic liver disease in Pakistan ⬇️

scientific article published on November 1, 1997

Hepatitis C virus genotypes in multi-transfused individuals

scientific article published in December 1995

Hepatitis C virus infections in the Democratic Republic of Congo exhibit a cohort effect

scientific article published on 16 February 2013

Hepatitis E virus and fulminant hepatitis--a virus or host-specific pathology?

scientific article

Hepatitis E virus is the leading cause of acute viral hepatitis in Lothian, Scotland

scientific article published on 15 December 2015

Hepatitis E virus mixed infection in immunocompetent patient.

scientific article published on March 2013

Heterosexual transmission of hepatitis C virus

scientific article published in October 1993

High detection frequency and viral loads of human rhinovirus species A to C in fecal samples; diagnostic and clinical implications.

scientific article published in March 2012

High frequencies of exposure to the novel human parvovirus PARV4 in hemophiliacs and injection drug users, as detected by a serological assay for PARV4 antibodies

scientific article

High frequency, sustained T cell responses to PARV4 suggest viral persistence in vivo.

scientific article

High levels of human immunodeficiency virus infection of CD8 lymphocytes expressing CD4 in vivo.

scientific article published on September 2004

High prevalence of hepatitis G virus infection in multiply transfused children with thalassaemia ⬇️

scientific article published on March 1, 1998

High rates of infection with novel enterovirus variants in wild populations of mandrills and other old world monkey species

scientific article

High seroprevalence of enterovirus infections in apes and old world monkeys

scientific article published in February 2012

High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage

scientific article

History of Chemically and Radiatively Important Atmospheric Gases from the Advanced Global Atmospheric Gases Experiment (AGAGE)

History of chemically and radiatively important atmospheric gases from the Advanced Global Atmospheric Gases Experiment (AGAGE)

scientific article published in 2018

Human bocaviruses are highly diverse, dispersed, recombination prone, and prevalent in enteric infections

scientific article

Human immunodeficiency virus and the brain: investigation of virus load and neuropathologic changes in pre-AIDS subjects.

scientific article published in October 1993

Human parechoviruses: biology, epidemiology and clinical significance

scientific article published on 15 April 2009

Human parvovirus 4 'PARV4' remains elusive despite a decade of study

scientific article

Human parvovirus 4 as potential cause of encephalitis in children, India.

scientific article

Human parvovirus 4 infection among mothers and children in South Africa

scientific article published on April 2015

Human parvovirus 4 infection in low- and high-risk French individuals.

scientific article published in March 2014

Human parvovirus 4 infection, Cameroon

scientific article published in April 2012

ICTV Virus Taxonomy Profile: Flaviviridae

scientific article (publication date: 2017)

ICTV Virus Taxonomy Profile: Picornaviridae

scientific article published on 8 September 2017

Identification of 19 Novel Hepatitis C Virus Subtypes-Further Expanding HCV Classification

scientific article published on 22 February 2019

Identification of a conserved RNA replication element (cre) within the 3Dpol-coding sequence of hepatoviruses.

scientific article

Identification of a novel clade of human immunodeficiency virus type 1 in Democratic Republic of Congo

scientific article published in July 2002

Identification of a pegivirus (GB virus-like virus) that infects horses.

scientific article

Identification of genotypes of hepatitis C virus by sequence comparisons in the core, E1 and NS-5 regions

scientific article published in May 1994

Identification of novel anelloviruses with broad diversity in UK rodents

scientific article

Identification of rodent homologs of hepatitis C virus and pegiviruses

scientific article

Identification of shared populations of human immunodeficiency virus type 1 infecting microglia and tissue macrophages outside the central nervous system.

scientific article

Immunohistochemical detection of KI polyomavirus in lung and spleen.

scientific article

Impact of virus subtype and host IFNL4 genotype on large-scale RNA structure formation in the genome of hepatitis C virus

scientific article published on 03 August 2020

In situ polymerase chain reaction amplification of HIV-1 DNA in brain tissue.

scientific article published in February 1998

In vivo distribution and cytopathology of variants of human immunodeficiency virus type 1 showing restricted sequence variability in the V3 loop.

scientific article published on September 1994

Incidence, molecular epidemiology and clinical presentations of human metapneumovirus; assessment of its importance as a diagnostic screening target

article

Increase in Enterovirus D68 Infections in Young Children, United Kingdom, 2006-2016

scientific article published on 17 June 2019

Independent evolution of macrophage-tropism and increased charge between HIV-1 R5 envelopes present in brain and immune tissue.

scientific article

Influence of HAART on HIV-related CNS disease and neuroinflammation.

scientific article published on June 2005

Influence of genome-scale RNA structure disruption on the replication of murine norovirus--similar replication kinetics in cell culture but attenuation of viral fitness in vivo.

scientific article published on 29 April 2013

Infrequent vertical transmission of hepatitis C virus.

scientific article published in March 1993

Interferon lambda 4 impacts broadly on hepatitis C virus diversity

Interferon lambda 4 impacts the genetic diversity of hepatitis C virus

scientific article published on 03 September 2019

Interferon-alpha 2b therapy in low-activity hepatitis C: a pilot study

scientific article published on 01 December 1997

Investigation of the pattern of diversity of hepatitis C virus in relation to times of transmission.

scientific article

Investigation of the pattern of hepatitis C virus sequence diversity in different geographical regions: implications for virus classification. The International HCV Collaborative Study Group

scientific article published in October 1995

Large-scale screening and characterization of enteroviruses and kobuviruses infecting pigs in Vietnam

scientific article (publication date: February 2016)

Low level or absent in vivo replication of hepatitis C virus and hepatitis G virus/GB virus C in peripheral blood mononuclear cells ⬇️

scientific article published on April 1, 1998

Maternal antibodies to gp120 V3 sequence do not correlate with protection against vertical transmission of human immunodeficiency virus

scientific article published on October 1, 1992

Methods for virus classification and the challenge of incorporating metagenomic sequence data.

scientific article

Modelling mutational and selection pressures on dinucleotides in eukaryotic phyla--selection against CpG and UpA in cytoplasmically expressed RNA and in RNA viruses

scientific article

Molecular and Epidemiological Evidence of Patient-to-Patient Hepatitis C virus Transmission in a Scottish Emergency Department

scientific article published on 11 December 2017

Molecular epidemiology and the evolution of human coxsackievirus A6.

scientific article published on 29 September 2016

Molecular epidemiology of an outbreak of infection with hepatitis C virus in recipients of anti-D immunoglobulin

scientific article published in May 1995

Molecular evidence of nosocomial transmission of hepatitis C virus in a haemodialysis unit.

scientific article published in March 2000

Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIV-infected surgeon

scientific article published in June 1993

Neutralising antibodies to SARS coronavirus 2 in Scottish blood donors - a pilot study of the value of serology to determine population exposure

scientific article published on 17 April 2020

Neutralization of primary and T-cell line adapted isolates of human immunodeficiency virus type 1: role of V3-specific antibodies.

scientific article

New DNA viruses identified in patients with acute viral infection syndrome.

scientific article

New highly diverse hepatitis C strains detected in sub-Saharan Africa have unknown susceptibility to direct-acting antiviral treatments

article

No evidence for an association between infections with WU and KI polyomaviruses and respiratory disease.

scientific article

Non-macrophage-tropic human immunodeficiency virus type 1 R5 envelopes predominate in blood, lymph nodes, and semen: implications for transmission and pathogenesis.

scientific article

Nonprimate hepaciviruses in domestic horses, United kingdom

scientific article published on December 2012

Norovirus regulation of the innate immune response and apoptosis occurs via the product of the alternative open reading frame 4

scientific article (publication date: December 2011)

Nosocomial transmission of hepatitis C virus within a British dialysis centre.

scientific article published in February 1997

Origin and fate of A/H1N1 influenza in Scotland during 2009

scientific article

PARV4 prevalence, phylogeny, immunology and coinfection with HIV, HBV and HCV in a multicentre African cohort

scientific article

PARV4: an emerging tetraparvovirus

scientific article

Paediatric PARV4 infection in South Africa: relationship to age, maternal PARV4 status, and HIV infection.

scientific article published on 23 May 2014

Parechoviruses in children: understanding a new infection.

scientific article published on June 2010

Parenteral transmission of the novel human parvovirus PARV4.

scientific article

Parvovirus 4 infection and clinical outcome in high-risk populations

scientific article

Parvoviruses and blood transfusion

scientific article published on 01 October 2007

Pathogenicity of individual rhinovirus species during exacerbations of cystic fibrosis ⬇️

scientific article

Perfluorocyclobutane (PFC-318, c-C4F8) in the global atmosphere

scholarly article

Perfluorocyclobutane (PFC-318, c-C4F8) in the global atmosphere

preprint

Phenotypic analysis of peripheral blood gammadelta T lymphocytes and their targeting by human immunodeficiency virus type 1 in vivo.

scientific article published in January 2003

Phylogenetic analysis of GBV-C/hepatitis G virus.

scientific article published in March 2000

Phylogeography and epidemic history of hepatitis C virus genotype 4 in Africa

scientific article

Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution

scientific article

Potential for diagnosis of infectious disease from the 100,000 Genomes Project Metagenomic Dataset: Recommendations for reporting results

scientific article published on 14 October 2019

Prevalence and epidemiological characteristics of hepatitis C in Scottish blood donors

scientific article published on 01 June 1994

Prevalence of GBV-C infection among dental personnel.

scientific article published in May 2003

Prevalence of HIV and syphilis among high-risk groups in Bangladesh

article

Prisoners of war - host adaptation and its constraints on virus evolution

scientific article published on 01 May 2019

Proposals for the classification of human rhinovirus species A, B and C into genotypically assigned types ⬇️

scientific article published on May 15, 2013

Proposals for the classification of human rhinovirus species C into genotypically assigned types.

scientific article published on 07 July 2010

Proposed reference sequences for hepatitis E virus subtypes.

scientific article published on 7 January 2016

RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies.

scientific article

Rampant C->U hypermutation in the genomes of SARS-CoV-2 and other coronaviruses – causes and consequences for their short and long evolutionary trajectories

scientific article published on 02 May 2020

Rampant C→U Hypermutation in the Genomes of SARS-CoV-2 and Other Coronaviruses: Causes and Consequences for Their Short- and Long-Term Evolutionary Trajectories

scientific article published on 24 June 2020

Rapid simultaneous detection of enterovirus and parechovirus RNAs in clinical samples by one-step real-time reverse transcription-PCR assay.

scientific article published on 18 May 2011

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015).

scientific article

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2016).

scientific article

Reactivation and mutation of newly discovered WU, KI, and Merkel cell carcinoma polyomaviruses in immunosuppressed individuals.

scientific article

Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022)

scientific article published in 2022

Recent increases in the atmospheric growth rate and emissions of HFC-23 (CHF3) and the link to HCFC-22 (CHClF2) production.

preprint

Recent increases in the atmospheric growth rate and emissions of HFC-23 (CHF<sub>3</sub>) and the link to HCFC-22 (CHClF<sub>2</sub>) production

scholarly article

Recombination Analysis of Non-Poliovirus Members of the Enterovirus C Species; Restriction of Recombination Events to Members of the Same 3DPol Cluster

scientific article published on 30 June 2020

Recombination and evolutionary dynamics of human echovirus 6.

scientific article published on 23 September 2013

Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses

scientific article

Recombination dynamics of human parechoviruses: investigation of type-specific differences in frequency and epidemiological correlates.

scientific article published on 20 January 2010

Recombination in the evolution of human rhinovirus genomes ⬇️

scientific article published on February 27, 2013

Recommendations for enterovirus diagnostics and characterisation within and beyond Europe.

scientific article published on 6 February 2018

Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure

scientific article published on 18 November 2020

Recommendations for the nomenclature of enteroviruses and rhinoviruses

scientific article published on 01 March 2020

Reconciling reported and unreported HFC emissions with atmospheric observations

scientific article

Reconstructing the origins of human hepatitis viruses.

scientific article

Relationship of Nef-positive and GFAP-reactive astrocytes to drug use in early and late HIV infection

scientific article published on 01 August 2003

Reply to 'Evolutionary stasis of viruses?'

scientific article published on 01 May 2019

Resistance analysis of genotype 3 HCV indicates subtypes inherently resistant to NS5A inhibitors.

scientific article published on 9 February 2018

Review: Molecular epidemiology of hepatitis C virus ⬇️

scientific article published on July 1, 1997

Rosavirus: the prototype of a proposed new genus of the Picornaviridae family

scientific article

SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus

scientific article published in 2020

SSE: a nucleotide and amino acid sequence analysis platform ⬇️

scientific article published on January 20, 2012

Screening respiratory samples for detection of human rhinoviruses (HRVs) and enteroviruses: comprehensive VP4-VP2 typing reveals high incidence and genetic diversity of HRV species C.

scientific article published on 14 October 2009

Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection

scientific article published on June 1993

Sequence data as evidence

scientific article published in Nature

Sequence variability in the 5' non-coding region of hepatitis C virus: identification of a new virus type and restrictions on sequence diversity.

scientific article published in April 1993

Sequencing of the Hepatitis C Virus: A Systematic Review.

scientific article

Sero-prevalence and incidence of A/H1N1 2009 influenza infection in Scotland in winter 2009-2010

scientific article

Serodiagnosis of primary infections with human parvovirus 4, Finland

scientific article

Serological Genotyping Using Synthetic Peptides Derived from the NS4 Region

scientific article published on 01 January 1999

Serology-enabled discovery of genetically diverse hepaciviruses in a new host

scientific article

Sexual transmission of GB virus C/hepatitis G virus ⬇️

scientific article published on July 1, 1998

Species association of hepatitis B virus (HBV) in non-human apes; evidence for recombination between gorilla and chimpanzee variants

scientific article

Specific association of human parechovirus type 3 with sepsis and fever in young infants, as identified by direct typing of cerebrospinal fluid samples.

scientific article

Spectrum of Enterovirus Serotypes Causing Uncomplicated Hand, Foot, and Mouth Disease and Enteroviral Diagnostic Yield of Different Clinical Samples

scientific article published on 01 November 2018

Spinal cord pathology and viral burden in homosexuals and drug users with AIDS.

scientific article published in February 1999

Spread of hepatitis C virus among European injection drug users infected with HIV: a phylogenetic analysis.

scientific article published on 8 January 2004

Steps towards serological diagnosis of human bocavirus infections

scientific article published on 01 February 2008

Strategies to improve detection and management of human parechovirus infection in young infants

scientific article published on 12 October 2018

Supplementary material to "Perfluorocyclobutane (PFC-318, c-C4F8) in the global atmosphere"

Supplementary material

Surveying the global virome: identification and characterization of HCV-related animal hepaciviruses

scientific article

TT virus infection: a novel virus-host relationship.

scientific article published in June 2002

TT virus--part of the normal human flora?

scientific article published in November 1999

Taxonomy of the order Bunyavirales: second update 2018

article by Piet Maes et al published 20 January 2019 in Archives of Virology

Taxonomy of the order Mononegavirales: second update 2018

scientific article published on 01 April 2019

Taxonomy of the order Mononegavirales: update 2019

scientific article published on 01 July 2019

The First Co-Opted Endogenous Foamy Viruses and the Evolutionary History of Reptilian Foamy Viruses

scientific article published on 12 July 2019

The GB viruses: a review and proposed classification of GBV-A, GBV-C (HGV), and GBV-D in genus Pegivirus within the family Flaviviridae

scientific article

The Origin of Hepatitis C Virus ⬇️

scientific article published on January 1, 2013

The Third Annual Meeting of the European Virus Bioinformatics Center

scientific article published on 05 May 2019

The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases

scientific article

The association of recombination events in the founding and emergence of subgenogroup evolutionary lineages of human enterovirus 71

scientific article published on 28 December 2011

The circadian clock components BMAL1 and REV-ERBα regulate flavivirus replication

scientific article published in Nature Communications

The clinical significance of the detection of hepatitis GBV-C RNA in the serum of patients with fulminant, presumed viral, hepatitis.

scientific article published on January 1997

The complete coding sequence of hepatitis C virus genotype 5a, the predominant genotype in South Africa.

scientific article published on July 1997

The effect of treatment with alpha-interferon on hepatitis G/GBV-C viraemia. The CONSTRUCT Group.

scientific article published on February 1998

The effects of illicit drugs on the HIV infected brain.

scientific article published on January 2008

The emergence of oseltamivir-resistant pandemic influenza A (H1N1) 2009 virus amongst hospitalised immunocompromised patients in Scotland, November-December, 2009.

scientific article

The fecal virome of pigs on a high-density farm.

scientific article

The first nonmammalian pegivirus demonstrates efficient in vitro replication and high lymphotropism

scientific article published on 05 August 2020

The genetic diversification of the HIV type 1 gag p17 gene in patients infected from a common source

scientific article published on October 1995

The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification.

scientific article published on 20 February 2018

The hepatitis C virus epidemic among injecting drug users.

scientific article published on March 2005

The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication.

scientific article published on 26 January 2014

The influence of viral RNA secondary structure on interactions with innate host cell defences.

scientific article published on 13 December 2013

The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh

scientific article

The non-primate hepacivirus 5' untranslated region possesses internal ribosomal entry site activity ⬇️

scientific article published on 11 September 2013

The origin of hepatitis C virus genotypes.

scientific article published on February 1997

The use of human sewage screening for community surveillance of hepatitis E virus in the UK.

scientific article published on 13 October 2015

Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus

scientific article (publication date: June 2002)

Time to Harmonize Dengue Nomenclature and Classification

scientific article published on 18 October 2018

Topoisomerase-II alpha expression as a predictive marker in a population of advanced breast cancer patients randomly treated either with single-agent doxorubicin or single-agent docetaxel

scientific article

Transfusion virology: progress and challenges ⬇️

scientific article published on 01 September 1998

Transmission networks and population turnover of echovirus 30

scientific article published on 17 December 2008

Transmission rates of hepatitis C virus by different batches of a contaminated anti-D immunoglobulin preparation.

scientific article published in January 1999

Treatment of hepatitis C infection in haemophiliacs: the Edinburgh experience.

scientific article

Treatment with interferon-alpha2a alone or interferon-alpha2a plus ribavirin in patients with chronic hepatitis C previously treated with interferon-alpha2a. CONSTRUCT Group.

scientific article published in February 1999

Understanding the outcomes of COVID-19 - does the current model of an acute respiratory infection really fit?

scientific article published on 17 December 2020

Use of an Outbred Rat Hepacivirus Challenge Model for Design and Evaluation of Efficacy of Different Immunization Strategies for Hepatitis C Virus

scientific article published on 11 October 2019

Use of nucleotide composition analysis to infer hosts for three novel picorna-like viruses

scientific article

Use of several second generation serological assays to determine the true prevalence of hepatitis C virus infection in haemophiliacs treated with non-virus inactivated factor VIII and IX concentrates

scientific article published on April 1, 1992

Variability and pathogenicity of hepatitis E virus genotype 3 variants

scientific article published on 14 August 2015

Variation in HIV-1 R5 macrophage-tropism correlates with sensitivity to reagents that block envelope: CD4 interactions but not with sensitivity to other entry inhibitors.

scientific article published on 18 January 2008

Variation of the hepatitis C virus 5' non-coding region: implications for secondary structure, virus detection and typing. The International HCV Collaborative Study Group.

scientific article published on July 1995

Viraemic frequencies and seroprevalence of non-primate hepacivirus and equine pegiviruses in horses and other mammalian species.

scientific article

Viral meningitis: epidemiology and diagnosis.

scientific article published on 12 August 2016

Viral persistence, liver disease and host response in Hepatitis C-like virus rat model.

scientific article published on 31 August 2017

Virologic and clinical features of primary infection with human parvovirus 4 in subjects with hemophilia: frequent transmission by virally inactivated clotting factor concentrates ⬇️

scientific article published on November 2, 2011

Virus 'quasispecies': making a mountain out of a molehill?

scientific article published on July 1997

Virus classification - where do you draw the line?

scientific article published on 24 July 2018

Virus immunocapture provides evidence of CD8 lymphocyte-derived HIV-1 in vivo.

scientific article

When should "I" consider a new hepatitis B virus genotype?

scientific article

Whole genome pyrosequencing of rare hepatitis C virus genotypes enhances subtype classification and identification of naturally occurring drug resistance variants.

scientific article published on 6 November 2012

Widespread infection with homologues of human parvoviruses B19, PARV4, and human bocavirus of chimpanzees and gorillas in the wild

scientific article

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