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List of works by Aron Charles Eklund

A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes

scholarly article

A robust prognostic gene expression signature for early stage lung adenocarcinoma

scientific article published on 19 February 2016

A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers

scientific article published on 20 August 2006

An Analysis of Natural T Cell Responses to Predicted Tumor Neoepitopes.

scientific article published on 15 November 2017

An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients

scientific article

Assessment of an RNA interference screen-derived mitotic and ceramide pathway metagene as a predictor of response to neoadjuvant paclitaxel for primary triple-negative breast cancer: a retrospective analysis of five clinical trials

scientific article

Biasogram: visualization of confounding technical bias in gene expression data

scientific article

Bifidobacteriumbreve Bif195 Protects Against Small-Intestinal Damage Caused by Acetylsalicylic Acid in Healthy Volunteers

scientific article published on 13 May 2019

Breast cancer brain metastases show increased levels of genomic aberration-based homologous recombination deficiency scores relative to their corresponding primary tumors

scientific article published on 01 September 2018

Chromosomal instability determines taxane response

scholarly article

Computational prediction of neoantigens: do we need more data or new approaches?

scientific article published on 21 February 2018

Concordance of exon array and real-time PCR assessment of gene expression following cancer cell cytotoxic drug exposure

scientific article published on 17 December 2008

Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response

scientific article

Correction of technical bias in clinical microarray data improves concordance with known biological information

scientific article

Deconvoluting complex tissues for expression quantitative trait locus-based analyses

scientific article published on 06 May 2013

Efficacy of neoadjuvant Cisplatin in triple-negative breast cancer

scientific article

Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples

scientific article

Evaluation of thrombocytosis as predictive factor in colorectal cancer

scientific article published in December 2013

GATA transcription factors directly regulate the Parkinson's disease-linked gene alpha-synuclein

scholarly article

Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome

scientific article published on 2 March 2015

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

scientific article (publication date: 8 March 2012)

Jetset: selecting the optimal microarray probe set to represent a gene

scientific article

Large-scale detection of antigen-specific T cells using peptide-MHC-I multimers labeled with DNA barcodes.

scientific article published on 29 August 2016

MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism That Mimics the Role of Activated RAS in Malignancy

scientific article published on 6 November 2015

MicroRNA profile analysis of human prostate cancers

scientific article published on 24 October 2008

Migrating the SNP array-based homologous recombination deficiency measures to next generation sequencing data of breast cancer.

scientific article

Minimising immunohistochemical false negative ER classification using a complementary 23 gene expression signature of ER status

scientific article

Molecular markers of early Parkinson's disease based on gene expression in blood

scientific article

MuPeXI: prediction of neo-epitopes from tumor sequencing data.

scientific article

Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization

scientific article

PGC-1α, a potential therapeutic target for early intervention in Parkinson's disease

scientific article

Pan-cancer analysis of genomic scar signatures associated with homologous recombination deficiency suggests novel indications for existing cancer drugs

scientific article

Paradoxical relationship between chromosomal instability and survival outcome in cancer

scientific article

Prediction of drug efficacy for cancer treatment based on comparative analysis of chemosensitivity and gene expression data

scientific article

Predictive biomarker discovery through the parallel integration of clinical trial and functional genomics datasets

scientific article

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

scientific article

Relationship of extreme chromosomal instability with long-term survival in a retrospective analysis of primary breast cancer

scientific article

Relationship of postoperative thrombocytosis and survival of patients with colorectal cancer

scientific article published on 3 April 2015

Reliability and reproducibility issues in DNA microarray measurements

scientific article

Replacing cRNA targets with cDNA reduces microarray cross-hybridization

Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data.

scientific article

Spatiotemporal patterns of gene expression during fetal monkey brain development

scientific article published in December 2003

Strand Orientation Bias Detector (SOBDetector) to remove artifacts from sequencing data of formalin fixed samples

article

Telomeric allelic imbalance indicates defective DNA repair and sensitivity to DNA-damaging agents

scientific article published on 22 March 2012

The CIN4 chromosomal instability qPCR classifier defines tumor aneuploidy and stratifies outcome in grade 2 breast cancer.

scientific article

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

scientific article

The comparison of thrombocytosis and platelet-lymphocyte ratio as potential prognostic markers in colorectal cancer.

scientific article

Tumor mutation burden forecasts outcome in ovarian cancer with BRCA1 or BRCA2 mutations

scientific article

TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen

scientific article (publication date: October 2015)

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