List of works by Johannes Schindelin

A high-level 3D visualization API for Java and ImageJ

scientific article

Bayesian binning beats approximate alternatives: estimating peri-stimulus time histograms ⬇️

Cooperativity among Rev-associated nuclear export signals regulates HIV-1 gene expression and is a determinant of virus species tropism

scientific article

Crowdsourcing the creation of image segmentation algorithms for connectomics

scientific article

Fiji: an open-source platform for biological-image analysis

scientific article

Generation of dispersed presomitic mesoderm cell cultures for imaging of the zebrafish segmentation clock in single cells

scientific article published on 24 July 2014

Genetic oscillations. A Doppler effect in embryonic pattern formation

scientific article

Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts

scientific article

ImageJ2: ImageJ for the next generation of scientific image data

scientific article published on 29 November 2017

Modelling spike trains and extracting response latency with Bayesian binning

scientific article published on 27 November 2009

OpenSPIM: an open-access light-sheet microscopy platform.

scientific article published on 9 June 2013

Software for bead-based registration of selective plane illumination microscopy data

scientific article published in June 2010

The ImageJ ecosystem: An open platform for biomedical image analysis

scientific article

TrackMate: An open and extensible platform for single-particle tracking

scientific article published on 3 October 2016

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification

scientific article

TrakEM2 software for neural circuit reconstruction

scientific article (publication date: 2012)

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